Wall clock time and date at job start Wed Apr 1 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46427 * 2 1 4 4 N 1.46900 * 109.47068 * 119.99474 * 2 1 3 5 5 C 1.46896 * 111.00179 * 275.00347 * 4 2 1 6 6 C 1.52997 * 109.46908 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47140 * 60.00224 * 6 5 4 8 8 O 1.42906 * 109.47485 * 299.99967 * 6 5 4 9 9 C 1.53006 * 109.47164 * 180.02562 * 6 5 4 10 10 N 1.46496 * 109.47070 * 185.00131 * 9 6 5 11 11 C 1.34775 * 119.99828 * 180.02562 * 10 9 6 12 12 O 1.21283 * 120.00204 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00297 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47637 * 179.97438 * 13 11 10 15 15 C 1.76197 * 100.00251 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99914 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00231 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.47018 * 60.00210 * 19 17 15 21 21 H 1.48503 * 109.47305 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47557 * 299.99953 * 19 17 15 23 23 C 1.50694 * 109.47097 * 240.00062 * 2 1 3 24 24 N 1.30523 * 126.34582 * 284.68385 * 23 2 1 25 25 N 1.28595 * 109.67279 * 179.82851 * 24 23 2 26 26 C 1.30529 * 109.67117 * 0.44782 * 25 24 23 27 27 N 1.35489 * 107.30578 * 359.73254 * 26 25 24 28 28 C 1.46501 * 126.97920 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47234 * 299.99990 * 1 2 3 30 30 H 1.08995 * 109.47199 * 60.00427 * 1 2 3 31 31 H 1.09004 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.00897 * 110.99688 * 38.95843 * 4 2 1 33 33 H 1.09000 * 109.47037 * 60.00144 * 5 4 2 34 34 H 1.09001 * 109.47271 * 300.00253 * 5 4 2 35 35 H 0.96701 * 113.99492 * 300.00048 * 8 6 5 36 36 H 1.09004 * 109.46579 * 304.99685 * 9 6 5 37 37 H 1.08992 * 109.47046 * 64.99868 * 9 6 5 38 38 H 0.97001 * 120.00404 * 359.97438 * 10 9 6 39 39 H 1.09008 * 109.46761 * 299.99858 * 13 11 10 40 40 H 1.09003 * 109.47518 * 59.99057 * 13 11 10 41 41 H 0.96998 * 120.00236 * 180.02562 * 18 17 15 42 42 H 1.07997 * 126.34397 * 179.72676 * 26 25 24 43 43 H 1.09000 * 109.47100 * 270.00021 * 28 27 26 44 44 H 1.09009 * 109.46985 * 29.99628 * 28 27 26 45 45 H 1.08996 * 109.47140 * 149.99535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5950 -0.5330 3.5745 7 1 3.5903 -0.9270 3.3692 8 8 1.7078 -1.6125 3.8741 9 6 2.6597 0.4200 4.7698 10 7 3.2618 -0.2707 5.9128 11 6 3.4211 0.3771 7.0839 12 8 3.0663 1.5319 7.1913 13 6 4.0409 -0.3331 8.2597 14 16 4.1174 0.7942 9.6738 15 6 4.8608 -0.2650 10.8696 16 1 5.1185 -1.2802 10.6060 17 6 5.1152 0.2053 12.1505 18 7 4.8016 1.4427 12.4717 19 14 5.9027 -0.9179 13.4185 20 1 7.2325 -1.3619 12.9286 21 1 6.0675 -0.1816 14.6976 22 1 5.0348 -2.1028 13.6373 23 6 2.0323 -0.7104 -1.2304 24 7 2.0389 -2.0002 -1.4305 25 7 2.5344 -2.2560 -2.5892 26 6 2.8752 -1.1415 -3.1772 27 7 2.5664 -0.1289 -2.3316 28 6 2.7691 1.3037 -2.5611 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.4496 -1.4978 1.4101 33 1 1.0870 0.6164 2.5525 34 1 2.7587 1.0464 2.1182 35 1 0.8019 -1.3349 4.0676 36 1 3.2653 1.2882 4.5097 37 1 1.6524 0.7444 5.0307 38 1 3.5452 -1.1944 5.8271 39 1 3.4360 -1.2019 8.5195 40 1 5.0485 -0.6569 7.9987 41 1 4.9798 1.7714 13.3667 42 1 3.3209 -1.0446 -4.1561 43 1 3.7551 1.5938 -2.1982 44 1 2.6983 1.5143 -3.6283 45 1 2.0048 1.8688 -2.0278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268302231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:42 Heat of formation + Delta-G solvation = -6.387338 kcal Electronic energy + Delta-G solvation = -26307.986636 eV Core-core repulsion = 22295.389445 eV Total energy + Delta-G solvation = -4012.597191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.48978 -39.53173 -38.46208 -36.78304 -35.45190 -34.14239 -32.42093 -32.32012 -30.42680 -29.64758 -28.26549 -28.17489 -25.55820 -25.11130 -23.83444 -22.69476 -22.04353 -20.75101 -20.29833 -17.94441 -17.88042 -17.13647 -16.85113 -16.64313 -16.35221 -15.93137 -15.73042 -15.20415 -15.11094 -14.85424 -14.79064 -14.56584 -14.06702 -13.91122 -13.66210 -13.62248 -13.35735 -13.05236 -13.00495 -12.70076 -12.52704 -12.33708 -12.10540 -11.79755 -11.73791 -11.35455 -11.03710 -11.02629 -10.77654 -10.68712 -10.62961 -10.49876 -9.81515 -9.62111 -9.42492 -9.05746 -8.99449 -8.91514 -8.23932 -6.49536 -6.20819 -3.91487 1.37450 1.96258 2.55107 2.97193 3.08183 3.24833 3.26905 3.30090 3.46392 3.72860 3.82910 3.99596 4.06941 4.14444 4.21628 4.28627 4.34957 4.44216 4.55886 4.60572 4.64373 4.68878 4.91092 4.98357 5.06945 5.13918 5.14599 5.17298 5.21290 5.38891 5.50418 5.52081 5.69546 5.76049 5.79246 5.91142 6.16339 6.28514 6.43115 6.58045 6.86939 7.27120 7.60460 7.70497 8.36133 8.40165 8.59542 9.24535 10.86566 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.001496 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.303371 B =18714.158412 C =18946.025173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.174 3.826 3 H 0.093 0.907 4 N -0.670 5.670 5 C 0.031 3.969 6 C 0.099 3.901 7 H 0.115 0.885 8 O -0.553 6.553 9 C 0.092 3.908 10 N -0.733 5.733 11 C 0.532 3.468 12 O -0.521 6.521 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.189 3.811 24 N -0.277 5.277 25 N -0.298 5.298 26 C 0.145 3.855 27 N -0.477 5.477 28 C 0.070 3.930 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.363 0.637 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.374 0.626 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.403 0.597 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.218 0.782 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 0.285 -33.150 33.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.061 3.939 3 H 0.111 0.889 4 N -0.303 5.303 5 C -0.099 4.099 6 C 0.039 3.961 7 H 0.133 0.867 8 O -0.358 6.358 9 C -0.033 4.033 10 N -0.388 5.388 11 C 0.319 3.681 12 O -0.396 6.396 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.079 4.079 24 N -0.117 5.117 25 N -0.137 5.137 26 C -0.142 4.142 27 N -0.169 5.169 28 C -0.073 4.073 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.184 0.816 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.222 0.778 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.234 0.766 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.105 0.615 -32.860 33.625 hybrid contribution -0.006 -0.473 0.462 0.661 sum -7.111 0.143 -32.398 33.169 Atomic orbital electron populations 1.22486 0.94612 1.03873 1.02874 1.19657 0.93273 0.95746 0.85188 0.88894 1.60117 1.58512 1.09674 1.02020 1.22618 1.00691 0.95786 0.90791 1.22206 0.95493 0.87505 0.90875 0.86719 1.86662 1.23564 1.33716 1.91826 1.21889 0.99518 0.95722 0.86216 1.45865 1.65117 1.16640 1.11161 1.20329 0.77907 0.86812 0.83097 1.90695 1.48828 1.17005 1.83040 1.23531 1.03093 1.04750 0.99021 1.85352 1.80945 1.16220 1.00926 1.22838 1.46890 1.00417 0.98284 0.90929 1.24986 0.95366 0.95548 0.97635 1.70007 1.44847 1.14842 1.20669 0.86223 0.79601 0.80032 0.79635 1.19934 1.20819 1.19915 1.24677 1.01128 0.91105 0.91023 1.74243 1.17387 1.10694 1.09359 1.74302 1.14297 1.23005 1.02071 1.26447 1.04643 0.83597 0.99531 1.46174 1.46452 1.09376 1.14883 1.22140 1.04018 0.76760 1.04383 0.91090 0.91875 0.90879 0.81556 0.94012 0.89602 0.77825 0.90737 0.91377 0.76223 0.89122 0.89169 0.92146 0.76610 0.89677 0.88776 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.14 37.16 0.34 -0.49 16 2 C 0.17 1.00 2.90 -68.87 -0.20 0.80 16 3 H 0.09 0.36 6.89 -51.93 -0.36 0.00 16 4 N -0.67 -4.68 6.23 -107.95 -0.67 -5.36 16 5 C 0.03 0.18 5.19 -3.83 -0.02 0.16 16 6 C 0.10 0.74 3.27 -26.73 -0.09 0.65 16 7 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 8 O -0.55 -4.43 12.62 -35.23 -0.44 -4.88 16 9 C 0.09 0.93 5.31 -4.04 -0.02 0.90 16 10 N -0.73 -9.53 5.50 -60.29 -0.33 -9.87 16 11 C 0.53 9.82 7.85 -10.99 -0.09 9.73 16 12 O -0.52 -11.62 15.86 5.56 0.09 -11.54 16 13 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 16 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 19 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 C 0.19 1.58 6.87 -154.99 -1.07 0.51 16 24 N -0.28 -3.31 12.21 32.79 0.40 -2.91 16 25 N -0.30 -3.45 12.21 29.69 0.36 -3.09 16 26 C 0.15 1.02 12.74 -89.94 -1.15 -0.13 16 27 N -0.48 -2.80 3.15 -122.69 -0.39 -3.19 16 28 C 0.07 0.08 10.84 59.85 0.65 0.73 16 29 H 0.07 0.25 7.45 -51.93 -0.39 -0.13 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.36 2.84 7.86 -39.29 -0.31 2.53 16 33 H 0.04 0.19 7.44 -51.93 -0.39 -0.20 16 34 H 0.09 0.45 8.06 -51.93 -0.42 0.03 16 35 H 0.37 1.93 9.04 45.56 0.41 2.35 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 4.49 8.47 -40.82 -0.35 4.15 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 40 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.22 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.09 -0.09 8.14 -51.92 -0.42 -0.51 16 45 H 0.09 0.00 7.46 -51.93 -0.39 -0.39 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -39.94 397.83 -8.66 -48.60 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.95 Total: 2.15 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.22 Total: -3.05 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.11 Total: -49.88 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.36 Total: -16.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.94 -8.66 -48.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268302231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.212 kcal (2) G-P(sol) polarization free energy of solvation -39.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds