Wall clock time and date at job start Wed Apr 1 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00110 * 2 1 4 4 H 1.08001 * 119.99912 * 199.70519 * 3 2 1 5 5 C 1.38816 * 120.00019 * 19.70078 * 3 2 1 6 6 N 1.31614 * 119.99876 * 15.99403 * 5 3 2 7 7 Si 1.86797 * 119.99899 * 195.99067 * 5 3 2 8 8 H 1.48504 * 109.47107 * 94.98663 * 7 5 3 9 9 H 1.48504 * 109.47112 * 214.98435 * 7 5 3 10 10 H 1.48498 * 109.47369 * 334.99008 * 7 5 3 11 11 C 1.46499 * 119.99849 * 179.97438 * 2 1 3 12 12 C 1.50695 * 109.47322 * 273.16917 * 11 2 1 13 13 C 1.38257 * 120.00305 * 353.91423 * 12 11 2 14 14 C 1.38205 * 120.00294 * 180.27808 * 13 12 11 15 15 C 1.38262 * 119.99969 * 359.48976 * 14 13 12 16 16 C 1.38210 * 119.99707 * 0.48724 * 15 14 13 17 17 C 1.38215 * 120.00205 * 173.93840 * 12 11 2 18 18 C 1.50705 * 119.99810 * 359.97438 * 17 12 11 19 19 N 1.46500 * 109.47046 * 76.46228 * 18 17 12 20 20 C 1.34774 * 119.99580 * 179.97438 * 19 18 17 21 21 O 1.21536 * 120.00546 * 0.02562 * 20 19 18 22 22 C 1.48004 * 119.99527 * 180.02562 * 20 19 18 23 23 N 1.32806 * 119.75594 * 0.02562 * 22 20 19 24 24 C 1.31429 * 121.66913 * 179.97438 * 23 22 20 25 25 C 1.38673 * 120.97951 * 0.02693 * 24 23 22 26 26 C 1.38449 * 119.39719 * 359.97438 * 25 24 23 27 27 C 1.38963 * 118.46479 * 359.73147 * 26 25 24 28 28 F 1.35105 * 120.49973 * 180.26206 * 27 26 25 29 29 H 1.09001 * 109.47579 * 275.41664 * 1 2 3 30 30 H 1.08999 * 109.47103 * 35.42008 * 1 2 3 31 31 H 1.08999 * 109.47203 * 155.41761 * 1 2 3 32 32 H 0.97006 * 120.00167 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47111 * 153.16358 * 11 2 1 34 34 H 1.09004 * 109.47048 * 33.17179 * 11 2 1 35 35 H 1.08006 * 119.99611 * 0.02562 * 13 12 11 36 36 H 1.08000 * 120.00124 * 179.71843 * 14 13 12 37 37 H 1.08005 * 120.00098 * 180.25308 * 15 14 13 38 38 H 1.08006 * 119.99770 * 179.76651 * 16 15 14 39 39 H 1.08997 * 109.46841 * 196.46599 * 18 17 12 40 40 H 1.08999 * 109.47002 * 316.46600 * 18 17 12 41 41 H 0.97002 * 119.99985 * 0.02562 * 19 18 17 42 42 H 1.07999 * 119.50742 * 180.02562 * 24 23 22 43 43 H 1.08009 * 120.30090 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.76188 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1822 1.2132 -0.3154 5 6 1.5166 2.3528 0.4053 6 7 0.3870 2.2892 1.0777 7 14 2.2679 4.0134 -0.0038 8 1 1.6601 4.5374 -1.2533 9 1 2.0077 4.9620 1.1088 10 1 3.7330 3.8610 -0.1921 11 6 2.1975 -1.2687 0.0006 12 6 2.3806 -1.7424 1.4194 13 6 1.9942 -0.9351 2.4731 14 6 2.1675 -1.3672 3.7744 15 6 2.7175 -2.6112 4.0223 16 6 3.1034 -3.4185 2.9690 17 6 2.9354 -2.9838 1.6673 18 6 3.3566 -3.8640 0.5188 19 7 4.6192 -3.3708 -0.0369 20 6 5.1906 -4.0061 -1.0791 21 8 4.6581 -4.9879 -1.5583 22 6 6.4665 -3.5082 -1.6400 23 7 7.0443 -2.4352 -1.1123 24 6 8.1773 -1.9612 -1.5802 25 6 8.8168 -2.5675 -2.6509 26 6 8.2515 -3.6890 -3.2336 27 6 7.0564 -4.1734 -2.7157 28 9 6.4716 -5.2682 -3.2492 29 1 -0.3634 0.0970 1.0231 30 1 -0.3633 0.8375 -0.5956 31 1 -0.3633 -0.9345 -0.4275 32 1 -0.0557 3.1047 1.3606 33 1 3.1733 -1.1251 -0.4634 34 1 1.6341 -2.0137 -0.5614 35 1 1.5607 0.0350 2.2793 36 1 1.8698 -0.7346 4.5976 37 1 2.8492 -2.9505 5.0392 38 1 3.5365 -4.3887 3.1627 39 1 3.4904 -4.8857 0.8741 40 1 2.5879 -3.8456 -0.2539 41 1 5.0444 -2.5874 0.3459 42 1 8.6168 -1.0865 -1.1240 43 1 9.7474 -2.1684 -3.0269 44 1 8.7309 -4.1790 -4.0683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272675252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:42 Heat of formation + Delta-G solvation = 14.687025 kcal Electronic energy + Delta-G solvation = -29421.995038 eV Core-core repulsion = 25254.947787 eV Total energy + Delta-G solvation = -4167.047251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.14061 -40.67055 -39.46071 -38.59044 -35.55127 -34.84859 -33.06405 -31.93948 -31.49621 -30.71766 -29.85514 -26.68315 -25.99586 -25.52000 -24.57756 -23.66114 -22.13764 -21.01635 -20.76846 -19.93135 -18.41955 -17.85539 -17.42393 -16.73308 -16.23157 -16.09428 -15.76079 -15.47301 -15.39646 -14.74416 -14.43936 -14.36103 -14.13385 -13.72247 -13.62162 -13.57008 -13.46927 -13.13864 -12.89441 -12.73929 -12.52675 -12.33825 -12.12720 -11.56505 -11.29225 -10.90136 -10.76207 -10.53117 -10.48557 -10.39889 -10.35377 -10.27726 -10.01240 -9.85613 -9.83615 -9.36906 -8.94377 -8.56773 -8.28129 -7.99281 -6.86633 -5.76439 -3.19969 0.19854 0.65433 1.74032 2.03304 2.56922 3.08161 3.36848 3.44243 3.44866 3.48683 3.71363 3.87696 4.26165 4.34948 4.44229 4.48239 4.54232 4.94724 5.00061 5.26643 5.28358 5.34131 5.38297 5.46376 5.50065 5.58372 5.62424 5.80638 5.85046 6.04797 6.14632 6.30140 6.35370 6.45392 6.49938 6.60077 6.75008 6.77987 6.95112 7.22253 7.24688 7.37252 7.42111 7.60625 7.71140 7.72423 7.81230 8.15916 8.34454 9.20127 9.82777 10.31078 11.28271 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.003569 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.677922 B = 7842.371699 C = 9461.060042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.181 3.819 12 C -0.074 4.074 13 C -0.085 4.085 14 C -0.120 4.120 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.128 4.128 18 C 0.166 3.834 19 N -0.695 5.695 20 C 0.566 3.434 21 O -0.527 6.527 22 C 0.051 3.949 23 N -0.427 5.427 24 C 0.090 3.910 25 C -0.121 4.121 26 C -0.120 4.120 27 C 0.108 3.892 28 F -0.106 7.106 29 H 0.032 0.968 30 H 0.043 0.957 31 H -0.002 1.002 32 H 0.253 0.747 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.161 0.839 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.414 0.586 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.042 -11.222 -2.595 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.054 3.946 12 C -0.078 4.078 13 C -0.103 4.103 14 C -0.138 4.138 15 C -0.158 4.158 16 C -0.132 4.132 17 C -0.129 4.129 18 C 0.044 3.956 19 N -0.346 5.346 20 C 0.350 3.650 21 O -0.403 6.403 22 C -0.089 4.089 23 N -0.138 5.138 24 C -0.070 4.070 25 C -0.141 4.141 26 C -0.147 4.147 27 C 0.085 3.915 28 F -0.084 7.084 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.251 0.749 42 H 0.190 0.810 43 H 0.169 0.831 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.035 -11.436 -2.196 18.237 hybrid contribution 0.937 0.838 -0.608 1.396 sum 14.972 -10.598 -2.804 18.556 Atomic orbital electron populations 1.20840 0.82297 0.95583 0.99660 1.43974 1.01975 1.00492 1.85613 1.19217 0.96591 0.84715 1.37608 0.91295 1.24892 0.97835 0.98136 0.98655 1.70064 1.18938 1.26760 1.39402 0.86280 0.78652 0.84315 0.77584 1.21641 1.21845 1.20513 1.19915 0.96452 0.88260 0.90015 1.21288 0.94716 0.92176 0.99597 1.21756 0.96248 1.01547 0.90740 1.21286 0.99313 0.95809 0.97440 1.20967 1.01506 0.95243 0.98131 1.20817 1.00922 0.99337 0.92103 1.19603 1.03784 0.95957 0.93555 1.20191 0.85040 0.96269 0.94107 1.45918 1.24104 1.32191 1.32433 1.17649 0.83255 0.83438 0.80683 1.90848 1.63237 1.25852 1.60348 1.21455 0.97476 0.94467 0.95475 1.67680 1.09839 1.08677 1.27593 1.22966 0.90658 0.99449 0.93960 1.22332 1.01090 0.94682 0.96023 1.21723 0.94161 0.97521 1.01247 1.18668 0.92942 0.85926 0.93921 1.91629 1.83083 1.49478 1.84173 0.95000 0.93779 0.98354 0.93703 0.92074 0.93148 0.82152 0.86866 0.87099 0.87029 0.90934 0.90272 0.74888 0.81046 0.83123 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.75 59.85 0.52 4.40 16 2 N -0.60 -14.46 1.75 -182.50 -0.32 -14.78 16 3 C -0.25 -6.61 8.92 -15.06 -0.13 -6.75 16 4 H 0.07 1.81 7.84 -52.49 -0.41 1.39 16 5 C 0.00 0.08 5.05 -17.43 -0.09 -0.01 16 6 N -0.91 -25.08 10.69 55.49 0.59 -24.49 16 7 Si 0.90 21.31 29.58 -169.99 -5.03 16.28 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.18 3.70 5.07 -5.20 -0.03 3.68 16 12 C -0.07 -1.41 5.87 -104.63 -0.61 -2.03 16 13 C -0.09 -1.75 9.17 -39.59 -0.36 -2.11 16 14 C -0.12 -2.11 10.05 -39.58 -0.40 -2.50 16 15 C -0.14 -2.13 10.05 -39.58 -0.40 -2.53 16 16 C -0.11 -1.68 9.67 -39.59 -0.38 -2.06 16 17 C -0.13 -2.06 5.25 -104.62 -0.55 -2.61 16 18 C 0.17 2.47 5.16 -5.19 -0.03 2.44 16 19 N -0.70 -10.24 5.29 -62.38 -0.33 -10.57 16 20 C 0.57 8.83 7.81 -12.26 -0.10 8.73 16 21 O -0.53 -9.55 15.32 5.33 0.08 -9.46 16 22 C 0.05 0.68 6.75 -82.95 -0.56 0.12 16 23 N -0.43 -5.15 9.54 -9.76 -0.09 -5.24 16 24 C 0.09 0.76 11.18 -17.56 -0.20 0.56 16 25 C -0.12 -0.78 10.11 -39.34 -0.40 -1.17 16 26 C -0.12 -0.95 10.16 -39.24 -0.40 -1.35 16 27 C 0.11 1.30 7.32 -38.82 -0.28 1.01 16 28 F -0.11 -1.46 15.55 2.25 0.04 -1.43 16 29 H 0.03 0.82 7.10 -51.93 -0.37 0.45 16 30 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 31 H 0.00 -0.05 7.86 -51.93 -0.41 -0.45 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.06 1.25 7.79 -51.93 -0.40 0.84 16 34 H 0.05 0.99 7.06 -51.93 -0.37 0.62 16 35 H 0.16 3.94 5.99 -52.48 -0.31 3.63 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.39 8.01 -52.48 -0.42 0.97 16 39 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 40 H 0.08 1.24 7.05 -51.93 -0.37 0.87 16 41 H 0.41 6.03 7.79 -40.82 -0.32 5.71 16 42 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.15 0.42 8.06 -52.48 -0.42 0.00 16 44 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -31.03 375.65 -9.21 -40.23 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.42 Total: 5.99 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -4.39 Total: -2.19 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.15 Total: -55.08 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.03 -9.21 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272675252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.919 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds