Wall clock time and date at job start Wed Apr 1 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 120.00110 * 2 1 4 4 H 1.08001 * 119.99912 * 199.70519 * 3 2 1 5 5 C 1.38816 * 120.00019 * 19.70078 * 3 2 1 6 6 N 1.31614 * 119.99876 * 15.99403 * 5 3 2 7 7 Si 1.86797 * 119.99899 * 195.99067 * 5 3 2 8 8 H 1.48504 * 109.47107 * 94.98663 * 7 5 3 9 9 H 1.48504 * 109.47112 * 214.98435 * 7 5 3 10 10 H 1.48498 * 109.47369 * 334.99008 * 7 5 3 11 11 C 1.46499 * 119.99849 * 179.97438 * 2 1 3 12 12 C 1.50695 * 109.47322 * 273.16917 * 11 2 1 13 13 C 1.38257 * 120.00305 * 353.91423 * 12 11 2 14 14 C 1.38205 * 120.00294 * 180.27808 * 13 12 11 15 15 C 1.38262 * 119.99969 * 359.48976 * 14 13 12 16 16 C 1.38210 * 119.99707 * 0.48724 * 15 14 13 17 17 C 1.38215 * 120.00205 * 173.93840 * 12 11 2 18 18 C 1.50705 * 119.99810 * 359.97438 * 17 12 11 19 19 N 1.46500 * 109.47046 * 76.46228 * 18 17 12 20 20 C 1.34774 * 119.99580 * 179.97438 * 19 18 17 21 21 O 1.21536 * 120.00546 * 0.02562 * 20 19 18 22 22 C 1.48004 * 119.99527 * 180.02562 * 20 19 18 23 23 N 1.32806 * 119.75594 * 0.02562 * 22 20 19 24 24 C 1.31429 * 121.66913 * 179.97438 * 23 22 20 25 25 C 1.38673 * 120.97951 * 0.02693 * 24 23 22 26 26 C 1.38449 * 119.39719 * 359.97438 * 25 24 23 27 27 C 1.38963 * 118.46479 * 359.73147 * 26 25 24 28 28 F 1.35105 * 120.49973 * 180.26206 * 27 26 25 29 29 H 1.09001 * 109.47579 * 275.41664 * 1 2 3 30 30 H 1.08999 * 109.47103 * 35.42008 * 1 2 3 31 31 H 1.08999 * 109.47203 * 155.41761 * 1 2 3 32 32 H 0.97006 * 120.00167 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47111 * 153.16358 * 11 2 1 34 34 H 1.09004 * 109.47048 * 33.17179 * 11 2 1 35 35 H 1.08006 * 119.99611 * 0.02562 * 13 12 11 36 36 H 1.08000 * 120.00124 * 179.71843 * 14 13 12 37 37 H 1.08005 * 120.00098 * 180.25308 * 15 14 13 38 38 H 1.08006 * 119.99770 * 179.76651 * 16 15 14 39 39 H 1.08997 * 109.46841 * 196.46599 * 18 17 12 40 40 H 1.08999 * 109.47002 * 316.46600 * 18 17 12 41 41 H 0.97002 * 119.99985 * 0.02562 * 19 18 17 42 42 H 1.07999 * 119.50742 * 180.02562 * 24 23 22 43 43 H 1.08009 * 120.30090 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.76188 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1822 1.2132 -0.3154 5 6 1.5166 2.3528 0.4053 6 7 0.3870 2.2892 1.0777 7 14 2.2679 4.0134 -0.0038 8 1 1.6601 4.5374 -1.2533 9 1 2.0077 4.9620 1.1088 10 1 3.7330 3.8610 -0.1921 11 6 2.1975 -1.2687 0.0006 12 6 2.3806 -1.7424 1.4194 13 6 1.9942 -0.9351 2.4731 14 6 2.1675 -1.3672 3.7744 15 6 2.7175 -2.6112 4.0223 16 6 3.1034 -3.4185 2.9690 17 6 2.9354 -2.9838 1.6673 18 6 3.3566 -3.8640 0.5188 19 7 4.6192 -3.3708 -0.0369 20 6 5.1906 -4.0061 -1.0791 21 8 4.6581 -4.9879 -1.5583 22 6 6.4665 -3.5082 -1.6400 23 7 7.0443 -2.4352 -1.1123 24 6 8.1773 -1.9612 -1.5802 25 6 8.8168 -2.5675 -2.6509 26 6 8.2515 -3.6890 -3.2336 27 6 7.0564 -4.1734 -2.7157 28 9 6.4716 -5.2682 -3.2492 29 1 -0.3634 0.0970 1.0231 30 1 -0.3633 0.8375 -0.5956 31 1 -0.3633 -0.9345 -0.4275 32 1 -0.0557 3.1047 1.3606 33 1 3.1733 -1.1251 -0.4634 34 1 1.6341 -2.0137 -0.5614 35 1 1.5607 0.0350 2.2793 36 1 1.8698 -0.7346 4.5976 37 1 2.8492 -2.9505 5.0392 38 1 3.5365 -4.3887 3.1627 39 1 3.4904 -4.8857 0.8741 40 1 2.5879 -3.8456 -0.2539 41 1 5.0444 -2.5874 0.3459 42 1 8.6168 -1.0865 -1.1240 43 1 9.7474 -2.1684 -3.0269 44 1 8.7309 -4.1790 -4.0683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272675252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:41 Heat of formation + Delta-G solvation = -3.271562 kcal Electronic energy + Delta-G solvation = -29422.773781 eV Core-core repulsion = 25254.947787 eV Total energy + Delta-G solvation = -4167.825994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.05969 -41.58242 -40.65785 -39.80222 -37.38328 -36.08725 -33.89192 -33.63983 -32.50807 -31.83892 -31.48246 -28.17353 -27.76817 -27.07824 -25.48681 -24.42484 -23.85738 -22.30762 -21.99327 -21.42074 -19.41502 -18.73499 -18.68809 -18.24756 -17.39307 -17.21251 -16.89967 -16.84363 -16.48081 -16.26062 -15.77822 -15.54221 -15.49177 -15.06373 -14.84133 -14.77094 -14.61167 -14.40301 -14.16805 -13.98332 -13.63912 -13.53731 -13.47688 -13.31066 -13.01994 -12.80838 -12.56640 -12.31920 -12.03542 -11.94218 -11.83016 -11.62838 -11.55098 -11.02361 -10.72609 -10.61230 -10.31358 -10.01526 -9.63218 -9.39803 -8.85741 -7.80873 -5.26343 -0.59442 -0.01982 0.40045 0.66922 1.46599 1.48636 1.56588 1.59205 2.03145 2.52209 2.64405 2.87194 3.00952 3.12408 3.32823 3.61056 3.63430 3.67412 3.76919 3.88202 4.06114 4.19861 4.35361 4.37675 4.39376 4.53114 4.60973 4.72516 4.74699 4.79776 4.80397 4.81457 4.91815 5.02486 5.21265 5.26311 5.30064 5.37978 5.49475 5.61232 5.64684 5.69682 5.85172 5.98061 6.26053 6.30725 6.34284 6.63140 7.00920 7.15829 7.85732 8.30424 9.22328 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.003569 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.677922 B = 7842.371699 C = 9461.060042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.609 5.609 3 C -0.255 4.255 4 H 0.067 0.933 5 C -0.044 4.044 6 N -0.931 5.931 7 Si 0.960 3.040 8 H -0.291 1.291 9 H -0.296 1.296 10 H -0.269 1.269 11 C 0.186 3.814 12 C -0.089 4.089 13 C -0.114 4.114 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.104 4.104 17 C -0.118 4.118 18 C 0.170 3.830 19 N -0.692 5.692 20 C 0.562 3.438 21 O -0.563 6.563 22 C 0.018 3.982 23 N -0.454 5.454 24 C 0.085 3.915 25 C -0.093 4.093 26 C -0.112 4.112 27 C 0.085 3.915 28 F -0.125 7.125 29 H 0.010 0.990 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.247 0.753 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.415 0.585 42 H 0.202 0.798 43 H 0.200 0.800 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.406 -12.004 -2.491 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.331 5.331 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.240 4.240 6 N -0.578 5.578 7 Si 0.789 3.211 8 H -0.218 1.218 9 H -0.222 1.222 10 H -0.194 1.194 11 C 0.060 3.940 12 C -0.092 4.092 13 C -0.132 4.132 14 C -0.145 4.145 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.119 4.119 18 C 0.048 3.952 19 N -0.342 5.342 20 C 0.348 3.652 21 O -0.442 6.442 22 C -0.119 4.119 23 N -0.165 5.165 24 C -0.076 4.076 25 C -0.113 4.113 26 C -0.138 4.138 27 C 0.062 3.938 28 F -0.104 7.104 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.252 0.748 42 H 0.219 0.781 43 H 0.217 0.783 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 17.415 -12.236 -2.089 21.386 hybrid contribution 0.030 1.056 -0.628 1.229 sum 17.446 -11.179 -2.717 20.898 Atomic orbital electron populations 1.20557 0.82658 0.95584 0.97972 1.44083 1.01998 1.01331 1.85719 1.19399 0.96562 0.85739 1.36801 0.91548 1.25547 0.98515 1.00951 0.98965 1.70221 1.20139 1.26881 1.40525 0.85355 0.78417 0.80537 0.76793 1.21820 1.22239 1.19387 1.19892 0.95851 0.86869 0.91393 1.20964 0.96709 0.93583 0.97949 1.21424 0.98575 1.00393 0.92793 1.21403 0.99625 0.97241 0.96269 1.21328 0.99329 0.93697 1.00114 1.21220 0.99409 1.00491 0.91069 1.19635 1.02763 0.94640 0.94860 1.20142 0.84950 0.96735 0.93385 1.45867 1.23867 1.32075 1.32389 1.18079 0.84000 0.82897 0.80266 1.90808 1.64552 1.27411 1.61390 1.21130 0.97420 0.96219 0.97151 1.67624 1.11594 1.08615 1.28649 1.23656 0.89544 1.00023 0.94400 1.22867 1.01712 0.92802 0.93903 1.22159 0.92357 0.97673 1.01591 1.19063 0.94522 0.85876 0.94344 1.91571 1.83761 1.50567 1.84467 0.97212 0.96262 0.96016 0.94346 0.92416 0.92579 0.86759 0.86072 0.83370 0.83515 0.89360 0.91456 0.74816 0.78142 0.78256 0.79619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 8.75 127.77 1.12 10.06 16 2 N -0.61 -30.57 1.75 -731.32 -1.28 -31.85 16 3 C -0.26 -13.82 8.92 84.04 0.75 -13.07 16 4 H 0.07 3.56 7.84 -2.91 -0.02 3.54 16 5 C -0.04 -2.44 5.05 84.86 0.43 -2.01 16 6 N -0.93 -53.72 10.69 21.65 0.23 -53.49 16 7 Si 0.96 44.67 29.58 68.60 2.03 46.70 16 8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 C 0.19 7.85 5.07 85.63 0.43 8.28 16 12 C -0.09 -3.44 5.87 -19.87 -0.12 -3.56 16 13 C -0.11 -4.80 9.17 22.27 0.20 -4.60 16 14 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 15 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 16 C -0.10 -2.76 9.67 22.27 0.22 -2.55 16 17 C -0.12 -3.68 5.25 -19.86 -0.10 -3.79 16 18 C 0.17 4.97 5.16 85.63 0.44 5.41 16 19 N -0.69 -20.49 5.29 -469.55 -2.49 -22.98 16 20 C 0.56 17.97 7.81 86.83 0.68 18.64 16 21 O -0.56 -21.12 15.32 -3.83 -0.06 -21.17 16 22 C 0.02 0.49 6.75 41.91 0.28 0.77 16 23 N -0.45 -10.48 9.54 -184.79 -1.76 -12.24 16 24 C 0.08 1.17 11.18 84.86 0.95 2.12 16 25 C -0.09 -0.78 10.11 22.42 0.23 -0.55 16 26 C -0.11 -1.43 10.16 22.49 0.23 -1.21 16 27 C 0.09 1.99 7.32 22.76 0.17 2.15 16 28 F -0.13 -3.55 15.55 44.97 0.70 -2.85 16 29 H 0.01 0.53 7.10 -2.39 -0.02 0.51 16 30 H 0.02 1.02 7.22 -2.39 -0.02 1.01 16 31 H 0.02 0.96 7.86 -2.39 -0.02 0.94 16 32 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 33 H 0.06 2.43 7.79 -2.39 -0.02 2.41 16 34 H 0.06 2.26 7.06 -2.38 -0.02 2.24 16 35 H 0.11 5.97 5.99 -2.91 -0.02 5.95 16 36 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.15 2.97 8.01 -2.91 -0.02 2.95 16 39 H 0.09 2.31 7.97 -2.39 -0.02 2.29 16 40 H 0.07 2.13 7.05 -2.39 -0.02 2.12 16 41 H 0.41 12.15 7.79 -92.71 -0.72 11.43 16 42 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.20 -0.23 8.06 -2.91 -0.02 -0.26 16 44 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -72.74 375.65 4.05 -68.70 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.32 Total: 20.47 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.35 Total: 8.70 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.30 Total: -120.55 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.70 Total: -2.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.74 4.05 -68.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272675252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.426 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds