Wall clock time and date at job start Wed Apr 1 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.50694 * 109.47496 * 240.00210 * 2 1 3 14 14 C 1.38235 * 120.00060 * 279.72934 * 13 2 1 15 15 C 1.38233 * 120.00095 * 179.81055 * 14 13 2 16 16 C 1.38232 * 120.00191 * 0.41530 * 15 14 13 17 17 C 1.50700 * 120.00231 * 179.79434 * 16 15 14 18 18 N 1.46502 * 109.47077 * 270.01894 * 17 16 15 19 19 C 1.34774 * 119.99901 * 180.02562 * 18 17 16 20 20 O 1.21522 * 120.00020 * 0.02562 * 19 18 17 21 21 C 1.48058 * 119.99744 * 180.02562 * 19 18 17 22 22 C 1.39378 * 119.69028 * 179.97438 * 21 19 18 23 23 C 1.38467 * 119.09058 * 179.97438 * 22 21 19 24 24 C 1.38899 * 118.47206 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.35207 * 179.97438 * 24 23 22 26 26 C 1.38883 * 119.29405 * 359.97438 * 24 23 22 27 27 N 1.31452 * 120.85805 * 359.74434 * 26 24 23 28 28 C 1.38238 * 119.99505 * 359.81187 * 16 15 14 29 29 C 1.38231 * 120.00283 * 0.02562 * 28 16 15 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 34 34 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 35 35 H 1.08008 * 119.99837 * 359.97438 * 14 13 2 36 36 H 1.08001 * 120.00132 * 180.21009 * 15 14 13 37 37 H 1.08990 * 109.47130 * 30.02112 * 17 16 15 38 38 H 1.09001 * 109.46899 * 150.02267 * 17 16 15 39 39 H 0.97003 * 119.99620 * 0.02562 * 18 17 16 40 40 H 1.08000 * 120.45415 * 359.95383 * 22 21 19 41 41 H 1.08001 * 120.76341 * 180.02562 * 23 22 21 42 42 H 1.08007 * 119.56571 * 179.97438 * 26 24 23 43 43 H 1.08001 * 119.99496 * 179.97438 * 28 16 15 44 44 H 1.07998 * 119.99888 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0324 -0.7103 -1.2304 14 6 2.0721 -2.0917 -1.2633 15 6 2.5293 -2.7434 -2.3934 16 6 2.9548 -2.0136 -3.4875 17 6 3.4576 -2.7239 -4.7178 18 7 4.9030 -2.9342 -4.6039 19 6 5.5738 -3.5548 -5.5945 20 8 4.9798 -3.9395 -6.5824 21 6 7.0344 -3.7678 -5.4791 22 6 7.7216 -4.4108 -6.5071 23 6 9.0876 -4.6030 -6.3865 24 6 9.7219 -4.1451 -5.2388 25 9 11.0531 -4.3131 -5.0813 26 6 8.9731 -3.5128 -4.2548 27 7 7.6781 -3.3397 -4.3999 28 6 2.9195 -0.6321 -3.4529 29 6 2.4592 0.0195 -2.3240 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 2.8279 -2.4240 2.6156 35 1 1.7434 -2.6619 -0.4069 36 1 2.5571 -3.8227 -2.4203 37 1 2.9565 -3.6873 -4.8113 38 1 3.2470 -2.1177 -5.5989 39 1 5.3771 -2.6268 -3.8155 40 1 7.1959 -4.7547 -7.3856 41 1 9.6469 -5.0976 -7.1669 42 1 9.4617 -3.1554 -3.3603 43 1 3.2524 -0.0619 -4.3076 44 1 2.4320 1.0988 -2.2969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272692483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:42 Heat of formation + Delta-G solvation = -28.636339 kcal Electronic energy + Delta-G solvation = -27711.191101 eV Core-core repulsion = 23542.265208 eV Total energy + Delta-G solvation = -4168.925893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.15657 -41.74675 -40.73780 -39.89223 -37.63815 -35.98411 -34.36994 -33.68275 -32.52198 -31.94170 -31.42799 -29.86876 -27.47850 -25.85063 -25.37913 -24.83263 -23.85858 -23.09805 -21.96461 -21.26890 -19.58538 -19.44151 -18.69112 -18.51478 -17.74595 -17.06290 -16.92197 -16.77598 -16.48461 -16.16882 -15.84086 -15.67659 -15.57208 -15.12712 -15.08141 -14.94841 -14.64115 -14.47990 -14.35183 -14.26780 -13.95435 -13.69324 -13.51928 -13.38381 -13.04162 -12.89410 -12.56674 -12.32315 -11.97377 -11.83378 -11.73169 -11.59463 -11.24847 -11.15443 -10.99195 -10.84296 -10.36213 -10.07093 -9.86170 -9.62761 -9.13591 -8.38325 -5.32073 -0.69430 -0.06837 0.23074 0.46165 1.47781 1.58396 1.68406 1.84508 2.00501 2.57773 2.70349 2.74157 2.85186 3.04285 3.41408 3.54312 3.60352 3.65135 3.74021 3.74765 3.88077 3.92322 4.08012 4.10002 4.27557 4.45644 4.51492 4.54847 4.62085 4.66920 4.69628 4.72466 4.77740 4.90185 4.98950 5.03147 5.14421 5.22598 5.32613 5.36911 5.47209 5.56257 5.58805 5.76177 6.02426 6.22027 6.49976 6.52848 6.97949 7.09617 7.99786 8.11665 9.13392 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.002207 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.422935 B =12685.784759 C =14669.342674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.204 3.796 3 H 0.052 0.948 4 N -0.746 5.746 5 C -0.328 4.328 6 H 0.068 0.932 7 C -0.106 4.106 8 N -0.976 5.976 9 Si 1.127 2.873 10 H -0.294 1.294 11 H -0.277 1.277 12 H -0.278 1.278 13 C -0.076 4.076 14 C -0.127 4.127 15 C -0.096 4.096 16 C -0.116 4.116 17 C 0.169 3.831 18 N -0.700 5.700 19 C 0.572 3.428 20 O -0.560 6.560 21 C 0.047 3.953 22 C -0.080 4.080 23 C -0.104 4.104 24 C 0.072 3.928 25 F -0.124 7.124 26 C 0.072 3.928 27 N -0.448 5.448 28 C -0.090 4.090 29 C -0.122 4.122 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.361 0.639 34 H 0.243 0.757 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.415 0.585 40 H 0.170 0.830 41 H 0.188 0.812 42 H 0.193 0.807 43 H 0.149 0.851 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 -2.757 -24.051 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.096 3.904 3 H 0.070 0.930 4 N -0.389 5.389 5 C -0.459 4.459 6 H 0.086 0.914 7 C -0.297 4.297 8 N -0.624 5.624 9 Si 0.952 3.048 10 H -0.220 1.220 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.077 4.077 14 C -0.146 4.146 15 C -0.115 4.115 16 C -0.116 4.116 17 C 0.047 3.953 18 N -0.350 5.350 19 C 0.357 3.643 20 O -0.439 6.439 21 C -0.091 4.091 22 C -0.100 4.100 23 C -0.130 4.130 24 C 0.050 3.950 25 F -0.102 7.102 26 C -0.090 4.090 27 N -0.159 5.159 28 C -0.108 4.108 29 C -0.140 4.140 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.194 0.806 34 H 0.053 0.947 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.252 0.748 40 H 0.187 0.813 41 H 0.205 0.795 42 H 0.210 0.790 43 H 0.167 0.833 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.780 -2.475 -22.498 24.657 hybrid contribution 0.367 -0.651 -1.290 1.491 sum 10.147 -3.125 -23.788 26.050 Atomic orbital electron populations 1.22239 0.96753 1.00851 1.00941 1.19344 0.93008 0.94550 0.83470 0.92969 1.42725 1.79696 1.09746 1.06763 1.20383 1.40020 0.95417 0.90085 0.91424 1.27175 0.99728 0.97618 1.05157 1.70993 1.54073 1.09445 1.27910 0.82636 0.76916 0.73516 0.71747 1.22040 1.20354 1.20401 1.20325 0.97492 0.94254 0.95585 1.20938 1.01125 0.94361 0.98163 1.21141 0.97695 1.00380 0.92269 1.19764 1.02447 0.94008 0.95422 1.20215 0.79342 1.00495 0.95251 1.45992 1.09095 1.57995 1.21918 1.17956 0.85822 0.77779 0.82711 1.90780 1.69203 1.52298 1.31650 1.21175 0.94260 1.00779 0.92860 1.22192 0.93810 0.94694 0.99332 1.22009 0.94501 0.98852 0.97611 1.19154 0.78785 1.00098 0.96915 1.91569 1.29892 1.93121 1.95620 1.23303 0.88906 0.96971 0.99786 1.67579 1.10075 1.16094 1.22111 1.21247 0.97773 0.93615 0.98186 1.21191 0.99377 1.00667 0.92756 0.94132 0.94021 0.90985 0.80581 0.94710 0.88012 0.84872 0.90174 0.89298 0.74789 0.81300 0.79523 0.79013 0.83297 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.47 71.98 0.68 -4.68 16 2 C 0.20 8.19 3.09 44.24 0.14 8.33 16 3 H 0.05 2.12 7.94 -2.38 -0.02 2.10 16 4 N -0.75 -37.81 5.07 -326.51 -1.65 -39.46 16 5 C -0.33 -18.44 9.93 84.03 0.83 -17.61 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.11 -6.18 5.50 84.86 0.47 -5.71 16 8 N -0.98 -61.57 13.70 21.65 0.30 -61.28 16 9 Si 1.13 52.13 29.92 68.60 2.05 54.19 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 C -0.08 -2.57 4.96 -19.87 -0.10 -2.67 16 14 C -0.13 -4.26 9.06 22.27 0.20 -4.06 16 15 C -0.10 -2.59 9.70 22.27 0.22 -2.37 16 16 C -0.12 -2.64 5.25 -19.87 -0.10 -2.75 16 17 C 0.17 3.35 5.80 85.63 0.50 3.85 16 18 N -0.70 -14.54 5.54 -469.52 -2.60 -17.14 16 19 C 0.57 12.76 7.81 86.85 0.68 13.43 16 20 O -0.56 -14.88 16.32 -3.79 -0.06 -14.94 16 21 C 0.05 0.88 6.75 41.89 0.28 1.17 16 22 C -0.08 -1.10 9.63 22.60 0.22 -0.88 16 23 C -0.10 -1.04 10.15 22.48 0.23 -0.81 16 24 C 0.07 0.91 7.36 22.58 0.17 1.08 16 25 F -0.12 -1.63 17.28 44.97 0.78 -0.85 16 26 C 0.07 1.06 11.17 84.90 0.95 2.00 16 27 N -0.45 -8.45 9.53 -184.73 -1.76 -10.21 16 28 C -0.09 -2.02 9.70 22.27 0.22 -1.80 16 29 C -0.12 -3.31 9.67 22.27 0.22 -3.09 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.36 19.11 4.88 -92.71 -0.45 18.65 16 34 H 0.24 15.28 6.77 -92.71 -0.63 14.66 16 35 H 0.10 3.81 6.90 -2.91 -0.02 3.79 16 36 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 37 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 38 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 39 H 0.42 8.71 7.79 -92.71 -0.72 7.99 16 40 H 0.17 1.96 7.64 -2.91 -0.02 1.94 16 41 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 42 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.14 3.25 8.04 -2.91 -0.02 3.22 16 Total: -1.00 -72.28 384.29 2.85 -69.43 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.02 Total: 36.83 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 5.78 Total: -16.56 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.72 Total: -128.09 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.06 Total: -14.94 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.78 Total: -0.85 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.19 kcal Total: -72.28 2.85 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272692483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.791 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds