Wall clock time and date at job start Wed Apr 1 2020 02:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46700 * 2 1 4 4 N 1.46892 * 109.47327 * 240.00142 * 2 1 3 5 5 C 1.46908 * 111.00209 * 84.99269 * 4 2 1 6 6 C 1.50699 * 109.47096 * 180.02562 * 5 4 2 7 7 N 1.30735 * 125.53698 * 359.69521 * 6 5 4 8 8 C 1.34458 * 109.93993 * 179.88752 * 7 6 5 9 9 O 1.21724 * 125.92196 * 180.15326 * 8 7 6 10 10 N 1.34993 * 108.14917 * 0.37521 * 8 7 6 11 11 C 1.46499 * 126.85566 * 179.81715 * 10 8 7 12 12 N 1.35152 * 125.54070 * 180.02562 * 6 5 4 13 13 H 0.97006 * 126.64720 * 359.93388 * 12 6 5 14 14 C 1.52999 * 109.47304 * 119.99342 * 2 1 3 15 15 H 1.09000 * 109.47160 * 185.00177 * 14 2 1 16 16 C 1.53006 * 109.46626 * 65.00546 * 14 2 1 17 17 N 1.46492 * 109.47381 * 305.00396 * 14 2 1 18 18 C 1.34781 * 119.99920 * 204.99632 * 17 14 2 19 19 O 1.21274 * 119.99803 * 0.02562 * 18 17 14 20 20 C 1.50697 * 119.99747 * 180.02562 * 18 17 14 21 21 S 1.81008 * 109.47095 * 180.02562 * 20 18 17 22 22 C 1.76197 * 100.00235 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99917 * 359.97438 * 22 21 20 24 24 C 1.38798 * 120.00124 * 180.02562 * 22 21 20 25 25 N 1.31627 * 119.99669 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99921 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47662 * 89.99913 * 26 24 22 28 28 H 1.48504 * 109.47092 * 209.99678 * 26 24 22 29 29 H 1.48505 * 109.47425 * 329.99403 * 26 24 22 30 30 H 1.09001 * 109.47430 * 299.99746 * 1 2 3 31 31 H 1.08998 * 109.47381 * 60.00756 * 1 2 3 32 32 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 33 33 H 1.00901 * 111.00056 * 321.04631 * 4 2 1 34 34 H 1.08994 * 109.46802 * 300.00318 * 5 4 2 35 35 H 1.09002 * 109.46474 * 60.00381 * 5 4 2 36 36 H 1.09005 * 109.47179 * 269.95690 * 11 10 8 37 37 H 1.08997 * 109.47398 * 29.95143 * 11 10 8 38 38 H 1.08999 * 109.47095 * 149.96006 * 11 10 8 39 39 H 1.09001 * 109.46998 * 179.97438 * 16 14 2 40 40 H 1.09000 * 109.47050 * 299.99699 * 16 14 2 41 41 H 1.09001 * 109.46801 * 59.99811 * 16 14 2 42 42 H 0.96998 * 120.00176 * 25.00271 * 17 14 2 43 43 H 1.09006 * 109.47530 * 299.99941 * 20 18 17 44 44 H 1.08998 * 109.47252 * 60.00349 * 20 18 17 45 45 H 0.97000 * 119.99547 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5217 -3.5560 7 7 2.9251 -1.7844 -3.5847 8 6 3.3284 -2.1232 -4.8218 9 8 3.7038 -3.2264 -5.1734 10 7 3.2494 -1.0265 -5.6049 11 6 3.5940 -0.9348 -7.0258 12 7 2.7705 0.0089 -4.7854 13 1 2.6030 0.9269 -5.0507 14 6 2.0401 -0.7211 1.2493 15 1 3.1264 -0.6441 1.2952 16 6 1.6354 -2.1954 1.1880 17 7 1.4559 -0.1035 2.4423 18 6 2.0914 -0.1936 3.6276 19 8 3.1469 -0.7855 3.7062 20 6 1.4901 0.4412 4.8549 21 16 2.5718 0.1493 6.2766 22 6 1.6535 0.9736 7.5342 23 1 0.7187 1.4569 7.2914 24 6 2.1319 1.0027 8.8368 25 7 3.2715 0.4141 9.1326 26 14 1.1579 1.8759 10.1703 27 1 0.2147 0.9185 10.8019 28 1 2.0900 2.4038 11.1988 29 1 0.3948 2.9998 9.5704 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.4496 -1.4979 -1.4100 34 1 1.0870 0.6162 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 4.6447 -0.6631 -7.1281 37 1 3.4196 -1.8981 -7.5050 38 1 2.9743 -0.1747 -7.5016 39 1 1.9991 -2.7093 2.0778 40 1 0.5491 -2.2724 1.1421 41 1 2.0700 -2.6548 0.3003 42 1 0.6118 0.3702 2.3794 43 1 1.3837 1.5141 4.6941 44 1 0.5105 0.0038 5.0475 45 1 3.6056 0.4341 10.0430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275358572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:57 Heat of formation + Delta-G solvation = -3.829781 kcal Electronic energy + Delta-G solvation = -26624.938925 eV Core-core repulsion = 22612.452638 eV Total energy + Delta-G solvation = -4012.486287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.31057 -40.84990 -38.94360 -38.34940 -36.01369 -34.84073 -34.55301 -32.82499 -32.31283 -30.59162 -29.57135 -28.34193 -27.62665 -26.43990 -25.15619 -22.83104 -22.27435 -21.80494 -20.70263 -19.84304 -19.40982 -17.97236 -17.75681 -17.53919 -17.01258 -16.85034 -16.67121 -16.44751 -16.33223 -15.89484 -15.56423 -15.46825 -14.75084 -14.67311 -14.44771 -14.28627 -14.13777 -14.00520 -13.62487 -13.49254 -13.19418 -13.12662 -13.06490 -12.93260 -12.86405 -12.62260 -12.47705 -12.25266 -11.80012 -11.72622 -11.65646 -11.12093 -11.11515 -10.97638 -10.84599 -10.22038 -10.02964 -9.65763 -9.28900 -8.62905 -8.31509 -6.09318 0.33920 0.38371 1.30585 1.44719 1.50561 1.60452 1.71590 2.25756 2.30207 2.31842 2.55502 3.02685 3.15193 3.36903 3.45371 3.85051 3.95154 3.97827 4.08261 4.15799 4.31001 4.35722 4.36649 4.43286 4.55205 4.56476 4.56889 4.63316 4.69411 4.83090 4.84717 4.95022 5.01245 5.05745 5.16927 5.34463 5.44770 5.53345 5.63065 5.98200 6.22801 6.28103 6.43530 6.62689 6.94856 7.08420 7.09749 7.37579 8.77694 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.034266 B = 0.001598 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.938356 B =17514.261173 C =17794.241224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.106 0.894 4 N -0.686 5.686 5 C 0.131 3.869 6 C 0.408 3.592 7 N -0.599 5.599 8 C 0.612 3.388 9 O -0.600 6.600 10 N -0.445 5.445 11 C 0.102 3.898 12 N -0.467 5.467 13 H 0.470 0.530 14 C 0.153 3.847 15 H 0.061 0.939 16 C -0.158 4.158 17 N -0.705 5.705 18 C 0.533 3.467 19 O -0.567 6.567 20 C -0.128 4.128 21 S -0.156 6.156 22 C -0.545 4.545 23 H 0.084 0.916 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 0.999 3.001 27 H -0.269 1.269 28 H -0.279 1.279 29 H -0.256 1.256 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.357 0.643 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.414 0.586 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 9.740 -34.213 37.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.013 4.013 3 H 0.124 0.876 4 N -0.319 5.319 5 C 0.000 4.000 6 C 0.133 3.867 7 N -0.350 5.350 8 C 0.310 3.690 9 O -0.477 6.477 10 N -0.273 5.273 11 C -0.038 4.038 12 N -0.201 5.201 13 H 0.323 0.677 14 C 0.048 3.952 15 H 0.079 0.921 16 C -0.216 4.216 17 N -0.361 5.361 18 C 0.319 3.681 19 O -0.445 6.445 20 C -0.280 4.280 21 S 0.071 5.929 22 C -0.693 4.693 23 H 0.102 0.898 24 C -0.192 4.192 25 N -0.549 5.549 26 Si 0.821 3.179 27 H -0.194 1.194 28 H -0.204 1.204 29 H -0.180 1.180 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.178 0.822 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.270 7.448 -33.838 35.621 hybrid contribution -2.269 1.578 -0.078 2.765 sum -10.539 9.026 -33.916 36.644 Atomic orbital electron populations 1.22609 0.94849 1.03306 1.03953 1.21554 0.94235 0.97973 0.87510 0.87594 1.59955 1.59811 1.09642 1.02522 1.20935 1.03280 0.93477 0.82352 1.24406 0.86680 0.89143 0.86449 1.71805 1.29409 1.14166 1.19636 1.18652 0.82003 0.84199 0.84169 1.90899 1.55916 1.22443 1.78431 1.49526 1.63313 1.04558 1.09865 1.22167 1.02792 1.05693 0.73155 1.44795 1.61041 1.08547 1.05678 0.67712 1.20831 0.97996 0.92663 0.83757 0.92076 1.22123 1.02089 0.95938 1.01454 1.45872 1.26166 1.57297 1.06785 1.20064 0.84137 0.79070 0.84856 1.90705 1.24365 1.43671 1.85761 1.23377 1.03825 1.04943 0.95824 1.85659 1.32540 1.73848 1.00877 1.23220 1.10249 1.40235 0.95603 0.89758 1.26135 0.96247 0.96107 1.00733 1.70196 1.20896 1.42932 1.20874 0.84949 0.77726 0.78480 0.76783 1.19439 1.20449 1.17973 0.91111 0.89642 0.91916 0.82166 0.86623 0.84340 0.90157 0.89461 0.86123 0.95883 0.90818 0.90356 0.74691 0.86952 0.87328 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.96 8.68 71.98 0.62 -0.33 16 2 C 0.10 0.93 2.64 44.92 0.12 1.05 16 3 H 0.11 0.70 7.80 -2.38 -0.02 0.68 16 4 N -0.69 -6.98 5.36 -495.57 -2.65 -9.64 16 5 C 0.13 0.28 6.11 85.56 0.52 0.81 16 6 C 0.41 3.95 7.97 138.02 1.10 5.05 16 7 N -0.60 -13.59 10.70 -316.04 -3.38 -16.97 16 8 C 0.61 16.12 8.97 179.09 1.61 17.73 16 9 O -0.60 -21.97 17.91 -4.42 -0.08 -22.04 16 10 N -0.44 -5.94 4.06 -500.00 -2.03 -7.97 16 11 C 0.10 0.56 11.46 127.77 1.46 2.02 16 12 N -0.47 -2.01 7.36 -50.36 -0.37 -2.38 16 13 H 0.47 -2.93 8.96 -213.08 -1.91 -4.84 16 14 C 0.15 3.19 2.63 44.99 0.12 3.30 16 15 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 16 C -0.16 -3.55 8.86 71.98 0.64 -2.91 16 17 N -0.71 -16.08 4.99 -442.55 -2.21 -18.29 16 18 C 0.53 19.19 7.81 87.66 0.68 19.87 16 19 O -0.57 -26.58 15.52 -3.01 -0.05 -26.63 16 20 C -0.13 -4.94 6.16 71.23 0.44 -4.50 16 21 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 22 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 23 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 24 C 0.01 0.70 5.49 84.86 0.47 1.17 16 25 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 26 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 30 H 0.07 0.34 6.29 -2.39 -0.02 0.33 16 31 H 0.08 0.02 7.45 -2.39 -0.02 0.00 16 32 H 0.06 0.44 6.55 -2.38 -0.02 0.43 16 33 H 0.36 4.24 7.53 -89.69 -0.68 3.57 16 34 H 0.12 -0.64 7.43 -2.39 -0.02 -0.66 16 35 H 0.14 -0.27 8.06 -2.39 -0.02 -0.29 16 36 H 0.08 0.32 8.14 -2.38 -0.02 0.31 16 37 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 38 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 1.31 6.56 -2.39 -0.02 1.29 16 41 H 0.08 1.72 7.13 -2.39 -0.02 1.70 16 42 H 0.41 6.19 6.58 -92.71 -0.61 5.58 16 43 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.11 3.74 8.14 -2.40 -0.02 3.73 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -101.99 389.72 -3.33 -105.32 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.14 Total: 6.18 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 8.43 Total: 12.97 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -10.36 Total: -111.25 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.13 Total: -48.67 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -101.99 -3.33 -105.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275358572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.492 kcal (2) G-P(sol) polarization free energy of solvation -101.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds