Wall clock time and date at job start Wed Apr 1 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 N 1.46895 * 109.47068 * 119.99967 * 2 1 3 5 5 C 1.46894 * 111.00510 * 274.99941 * 4 2 1 6 6 C 1.50695 * 109.47558 * 180.02562 * 5 4 2 7 7 N 1.30731 * 125.53967 * 359.68960 * 6 5 4 8 8 C 1.34455 * 109.94472 * 179.83364 * 7 6 5 9 9 O 1.21721 * 125.92402 * 180.18050 * 8 7 6 10 10 N 1.34988 * 108.14724 * 0.43453 * 8 7 6 11 11 C 1.46505 * 126.85615 * 179.76986 * 10 8 7 12 12 N 1.35162 * 125.53802 * 180.02562 * 6 5 4 13 13 H 0.96989 * 126.65092 * 359.97438 * 12 6 5 14 14 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 15 15 H 1.09000 * 109.47050 * 175.00134 * 14 2 1 16 16 C 1.52999 * 109.46626 * 294.99833 * 14 2 1 17 17 N 1.46492 * 109.47363 * 54.99994 * 14 2 1 18 18 C 1.34780 * 120.00132 * 154.99846 * 17 14 2 19 19 O 1.21273 * 119.99697 * 0.02562 * 18 17 14 20 20 C 1.50697 * 119.99941 * 179.97438 * 18 17 14 21 21 S 1.81000 * 109.47133 * 180.02562 * 20 18 17 22 22 C 1.76200 * 100.00114 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00187 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99920 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99983 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99817 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47069 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47062 * 120.00061 * 26 24 22 29 29 H 1.48502 * 109.46988 * 239.99832 * 26 24 22 30 30 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 32 32 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 33 33 H 1.00902 * 111.00088 * 38.95676 * 4 2 1 34 34 H 1.09003 * 109.47228 * 300.00373 * 5 4 2 35 35 H 1.09005 * 109.46899 * 59.99570 * 5 4 2 36 36 H 1.09001 * 109.46523 * 269.97267 * 11 10 8 37 37 H 1.09000 * 109.47188 * 29.97279 * 11 10 8 38 38 H 1.08993 * 109.46984 * 149.97597 * 11 10 8 39 39 H 1.08993 * 109.47839 * 299.99931 * 16 14 2 40 40 H 1.09000 * 109.47160 * 60.00369 * 16 14 2 41 41 H 1.09002 * 109.46719 * 180.02562 * 16 14 2 42 42 H 0.97006 * 119.99963 * 335.00232 * 17 14 2 43 43 H 1.09000 * 109.47591 * 300.00338 * 20 18 17 44 44 H 1.09007 * 109.47167 * 60.00308 * 20 18 17 45 45 H 0.96995 * 119.99973 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5885 -0.5216 3.5557 7 7 2.9163 -1.7868 3.5870 8 6 3.3299 -2.1229 4.8214 9 8 3.7054 -3.2261 5.1730 10 7 3.2511 -1.0262 5.6044 11 6 3.5974 -0.9340 7.0250 12 7 2.7711 0.0091 4.7853 13 1 2.6037 0.9268 5.0505 14 6 2.0400 -0.7212 -1.2493 15 1 3.1263 -0.6443 -1.2952 16 6 1.6352 -2.1954 -1.1880 17 7 1.4559 -0.1037 -2.4424 18 6 2.0913 -0.1937 -3.6276 19 8 3.1464 -0.7865 -3.7064 20 6 1.4901 0.4411 -4.8550 21 16 2.5711 0.1479 -6.2768 22 6 1.6536 0.9737 -7.5342 23 1 0.7191 1.4576 -7.2913 24 6 2.1313 1.0014 -8.8371 25 7 3.2700 0.4112 -9.1333 26 14 1.1590 1.8775 -10.1700 27 1 -0.0755 2.4570 -9.5822 28 1 1.9863 2.9641 -10.7530 29 1 0.7935 0.9083 -11.2341 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.4495 -1.4979 1.4100 34 1 2.7588 1.0461 2.1182 35 1 1.0870 0.6163 2.5525 36 1 2.7181 -1.1595 7.6285 37 1 4.3879 -1.6488 7.2534 38 1 3.9435 0.0747 7.2498 39 1 2.0698 -2.6550 -0.3003 40 1 0.5489 -2.2723 -1.1421 41 1 1.9989 -2.7093 -2.0778 42 1 0.6118 0.3702 -2.3794 43 1 0.5105 0.0037 -5.0476 44 1 1.3838 1.5140 -4.6941 45 1 3.6036 0.4303 -10.0439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275358575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:00 Heat of formation + Delta-G solvation = 32.610879 kcal Electronic energy + Delta-G solvation = -26623.475053 eV Core-core repulsion = 22612.568952 eV Total energy + Delta-G solvation = -4010.906101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.69580 -39.67917 -38.10105 -37.46159 -35.24743 -34.07271 -32.41386 -32.07070 -31.43684 -29.74348 -28.39049 -27.87619 -25.99344 -25.47984 -24.38689 -22.24824 -21.61220 -20.67985 -19.79541 -18.95614 -17.87939 -17.19871 -16.92780 -16.47137 -16.04441 -15.94085 -15.81743 -15.16803 -14.95985 -14.79509 -14.70644 -14.19220 -13.99806 -13.76427 -13.57300 -13.38826 -13.31231 -13.07138 -12.76990 -12.57909 -12.46073 -12.33993 -11.94303 -11.72717 -11.48243 -11.10656 -11.06166 -11.00196 -10.89913 -10.73919 -10.55430 -10.20962 -9.78586 -9.32112 -9.06307 -8.99917 -8.93700 -8.78766 -8.19877 -6.47336 -6.20078 -3.90176 0.81227 0.89608 2.89633 3.07397 3.08484 3.16430 3.22381 3.28308 3.32347 3.53795 3.70878 3.92805 4.21890 4.24792 4.41578 4.44780 4.58308 4.60872 4.63521 4.83275 4.88212 4.93289 5.10613 5.15099 5.27423 5.30274 5.31870 5.49056 5.55124 5.58594 5.67473 5.71567 5.91913 5.93854 6.16189 6.18387 6.36046 6.43124 6.59829 6.74855 6.91457 7.54016 7.61277 7.76989 7.84773 8.36880 8.69346 9.25313 10.87386 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.001598 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.208463 B =17514.212613 C =17794.159398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 H 0.088 0.912 4 N -0.661 5.661 5 C 0.128 3.872 6 C 0.398 3.602 7 N -0.547 5.547 8 C 0.634 3.366 9 O -0.533 6.533 10 N -0.448 5.448 11 C 0.110 3.890 12 N -0.501 5.501 13 H 0.445 0.555 14 C 0.156 3.844 15 H 0.096 0.904 16 C -0.165 4.165 17 N -0.737 5.737 18 C 0.532 3.468 19 O -0.514 6.514 20 C -0.154 4.154 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.361 0.639 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.394 0.606 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 5.995 32.521 33.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.029 4.029 3 H 0.106 0.894 4 N -0.295 5.295 5 C -0.004 4.004 6 C 0.123 3.877 7 N -0.296 5.296 8 C 0.333 3.667 9 O -0.404 6.404 10 N -0.279 5.279 11 C -0.032 4.032 12 N -0.233 5.233 13 H 0.292 0.708 14 C 0.051 3.949 15 H 0.114 0.886 16 C -0.224 4.224 17 N -0.393 5.393 18 C 0.318 3.682 19 O -0.387 6.387 20 C -0.304 4.304 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.197 1.197 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.183 0.817 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.229 0.771 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.759 3.559 32.054 32.601 hybrid contribution -3.245 2.698 0.425 4.241 sum -8.004 6.257 32.480 34.032 Atomic orbital electron populations 1.22617 0.96789 1.03191 1.02405 1.21773 0.92988 0.98261 0.89916 0.89399 1.60109 1.59269 1.08764 1.01368 1.20608 1.00571 0.94377 0.84880 1.23865 0.88306 0.90328 0.85185 1.71915 1.26890 1.11037 1.19726 1.18426 0.81389 0.83856 0.83037 1.90981 1.52624 1.19653 1.77117 1.49539 1.64835 1.04721 1.08853 1.21856 1.02171 1.04065 0.75081 1.44796 1.63342 1.08398 1.06757 0.70785 1.20709 0.99718 0.92202 0.82319 0.88587 1.22207 1.00846 0.96008 1.03312 1.46185 1.26162 1.58705 1.08205 1.20266 0.84625 0.79532 0.83738 1.90712 1.21959 1.41134 1.84926 1.23536 1.05146 1.03121 0.98633 1.85432 1.28687 1.72803 0.96387 1.22915 1.10058 1.40239 0.95166 0.90922 1.24989 0.95232 0.95433 0.97933 1.70025 1.18885 1.41193 1.20128 0.86127 0.79565 0.79111 0.80737 1.19656 1.20600 1.20579 0.91267 0.92504 0.91389 0.81703 0.86795 0.91028 0.91180 0.88167 0.90213 0.90682 0.93013 0.91875 0.77112 0.89345 0.89369 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 8.68 37.16 0.32 -0.60 16 2 C 0.08 0.52 2.64 -67.71 -0.18 0.34 16 3 H 0.09 0.50 7.80 -51.93 -0.40 0.09 16 4 N -0.66 -4.23 5.36 -108.00 -0.58 -4.80 16 5 C 0.13 0.42 6.11 -4.98 -0.03 0.39 16 6 C 0.40 2.44 7.97 -155.12 -1.24 1.20 16 7 N -0.55 -6.20 10.69 -13.83 -0.15 -6.35 16 8 C 0.63 8.05 8.97 -87.02 -0.78 7.27 16 9 O -0.53 -8.98 17.91 5.17 0.09 -8.89 16 10 N -0.45 -3.28 4.06 -72.07 -0.29 -3.57 16 11 C 0.11 0.39 11.46 59.85 0.69 1.07 16 12 N -0.50 -1.90 7.36 32.73 0.24 -1.66 16 13 H 0.45 -0.30 8.96 -182.32 -1.63 -1.94 16 14 C 0.16 1.70 2.63 -67.93 -0.18 1.52 16 15 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16 16 C -0.17 -1.85 8.86 37.16 0.33 -1.52 16 17 N -0.74 -9.02 4.99 -53.81 -0.27 -9.29 16 18 C 0.53 9.62 7.81 -10.99 -0.09 9.53 16 19 O -0.51 -11.54 15.52 5.56 0.09 -11.45 16 20 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 21 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 26 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.07 0.38 6.55 -51.93 -0.34 0.04 16 31 H 0.06 0.18 7.45 -51.93 -0.39 -0.20 16 32 H 0.07 0.33 6.29 -51.93 -0.33 0.01 16 33 H 0.36 2.50 7.52 -39.29 -0.30 2.21 16 34 H 0.11 0.19 8.06 -51.93 -0.42 -0.23 16 35 H 0.07 0.04 7.44 -51.93 -0.39 -0.34 16 36 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.07 0.80 7.13 -51.93 -0.37 0.43 16 40 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.39 3.63 6.58 -40.82 -0.27 3.36 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -41.98 389.71 -9.88 -51.86 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.65 Total: -2.26 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.73 Total: 3.51 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.31 Total: -51.08 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.18 Total: -20.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -41.98 -9.88 -51.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275358575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.468 kcal (2) G-P(sol) polarization free energy of solvation -41.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds