Wall clock time and date at job start Wed Apr 1 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36932 * 119.99732 * 2 1 4 4 H 1.07996 * 120.00394 * 323.92686 * 3 2 1 5 5 C 1.38814 * 119.99831 * 143.93455 * 3 2 1 6 6 N 1.31618 * 120.00201 * 160.91201 * 5 3 2 7 7 Si 1.86800 * 120.00007 * 340.90569 * 5 3 2 8 8 H 1.48500 * 109.46775 * 95.33583 * 7 5 3 9 9 H 1.48497 * 109.47425 * 215.33929 * 7 5 3 10 10 H 1.48504 * 109.46972 * 335.33901 * 7 5 3 11 11 C 1.46506 * 119.99866 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47059 * 89.99846 * 11 2 1 13 13 H 1.09000 * 109.47034 * 304.99565 * 12 11 2 14 14 O 1.42899 * 109.47838 * 64.99708 * 12 11 2 15 15 C 1.53002 * 109.47051 * 184.99708 * 12 11 2 16 16 N 1.46499 * 109.47259 * 179.97438 * 15 12 11 17 17 C 1.46502 * 120.00057 * 269.99916 * 16 15 12 18 18 C 1.34771 * 120.00019 * 90.00005 * 16 15 12 19 19 O 1.21557 * 120.00158 * 4.05350 * 18 16 15 20 20 C 1.47838 * 120.00229 * 184.05275 * 18 16 15 21 21 C 1.40034 * 120.55998 * 312.10989 * 20 18 16 22 22 C 1.38351 * 118.29010 * 179.97438 * 21 20 18 23 23 C 1.38354 * 119.30484 * 0.27615 * 22 21 20 24 24 N 1.31937 * 121.07617 * 359.40330 * 23 22 21 25 25 C 1.31697 * 121.87720 * 0.63752 * 24 23 22 26 26 C 1.50699 * 119.71115 * 179.68100 * 25 24 23 27 27 F 1.39895 * 109.47397 * 14.06055 * 26 25 24 28 28 F 1.39901 * 109.46983 * 134.06523 * 26 25 24 29 29 H 1.09007 * 109.46641 * 275.03005 * 1 2 3 30 30 H 1.08994 * 109.47915 * 35.03028 * 1 2 3 31 31 H 1.08998 * 109.47272 * 155.03750 * 1 2 3 32 32 H 0.97000 * 120.00599 * 179.97438 * 6 5 3 33 33 H 1.08991 * 109.46958 * 329.99222 * 11 2 1 34 34 H 1.09007 * 109.46630 * 209.99268 * 11 2 1 35 35 H 0.96700 * 113.99687 * 59.99377 * 14 12 11 36 36 H 1.09007 * 109.46705 * 59.99791 * 15 12 11 37 37 H 1.09000 * 109.47085 * 299.99826 * 15 12 11 38 38 H 1.09000 * 109.46972 * 265.98187 * 17 16 15 39 39 H 1.08998 * 109.47149 * 25.98112 * 17 16 15 40 40 H 1.09000 * 109.47228 * 145.97725 * 17 16 15 41 41 H 1.08004 * 120.84825 * 359.95390 * 21 20 18 42 42 H 1.07999 * 120.34649 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.46080 * 179.70316 * 23 22 21 44 44 H 1.09001 * 109.46910 * 254.06089 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7649 2.0315 -0.5507 5 6 3.3382 1.3011 0.7077 6 7 4.1811 2.2716 0.4249 7 14 3.7413 0.0789 2.0617 8 1 4.5944 -1.0052 1.5119 9 1 4.4668 0.7733 3.1555 10 1 2.4829 -0.5031 2.5938 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 1 1.5060 -1.7541 -1.9822 14 8 3.3208 -0.7717 -2.0819 15 6 3.1060 -3.0932 -1.4457 16 7 3.3496 -3.5158 -2.8271 17 6 2.3247 -4.2688 -3.5542 18 6 4.5165 -3.2119 -3.4289 19 8 5.3954 -2.6521 -2.8031 20 6 4.7276 -3.5593 -4.8503 21 6 4.4200 -4.8409 -5.3233 22 6 4.6355 -5.1150 -6.6621 23 6 5.1486 -4.1256 -7.4818 24 7 5.4236 -2.9247 -7.0096 25 6 5.2364 -2.6157 -5.7432 26 6 5.5740 -1.2307 -5.2545 27 9 5.7535 -0.3802 -6.3506 28 9 4.5296 -0.7500 -4.4573 29 1 -0.3633 0.0901 1.0238 30 1 -0.3635 0.8414 -0.5898 31 1 -0.3634 -0.9316 -0.4337 32 1 5.0115 2.3524 0.9197 33 1 1.6084 -2.0285 0.5130 34 1 3.1500 -1.1386 0.5133 35 1 4.1835 -0.6804 -1.6547 36 1 2.4435 -3.8088 -0.9585 37 1 4.0524 -3.0489 -0.9067 38 1 2.5176 -5.3368 -3.4523 39 1 1.3425 -4.0362 -3.1428 40 1 2.3513 -3.9938 -4.6086 41 1 4.0249 -5.5961 -4.6598 42 1 4.4094 -6.0923 -7.0623 43 1 5.3224 -4.3383 -8.5263 44 1 6.4920 -1.2661 -4.6679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278865024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:55 Heat of formation + Delta-G solvation = -93.691797 kcal Electronic energy + Delta-G solvation = -32146.472278 eV Core-core repulsion = 27543.956144 eV Total energy + Delta-G solvation = -4602.516134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.67886 -46.67460 -41.04093 -39.37388 -37.26513 -35.57197 -34.43824 -33.12547 -32.48580 -31.50761 -29.89767 -27.32039 -27.16306 -26.34049 -25.63951 -24.20506 -22.63841 -21.77971 -20.76866 -19.90787 -17.84306 -17.73395 -17.43979 -17.14826 -17.00477 -16.25509 -16.07362 -15.75217 -15.45334 -15.44826 -14.79386 -14.36602 -14.21928 -14.08104 -13.79295 -13.76422 -13.45351 -13.36751 -13.09863 -13.04477 -12.86102 -12.67552 -12.46636 -12.33505 -12.30618 -11.95174 -11.47844 -11.31783 -11.28275 -10.83023 -10.50042 -10.44739 -10.34596 -10.17759 -9.88829 -9.79284 -9.55416 -9.47635 -9.40241 -8.51464 -8.41268 -6.73368 -5.84662 -3.25909 0.29544 0.66366 2.53235 2.86447 3.24801 3.30539 3.33982 3.49051 3.52203 3.93176 4.17864 4.29472 4.36723 4.55602 4.57716 4.81310 4.85020 4.91213 4.93584 5.08120 5.09720 5.13196 5.18269 5.41862 5.45656 5.47514 5.50615 5.57301 5.63728 5.76321 5.93100 6.00416 6.04712 6.22419 6.32487 6.44014 6.64062 6.71228 6.76646 7.23631 7.38974 8.05865 8.13783 8.48253 8.70435 9.06247 9.81353 10.18257 11.31354 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.003958 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.568498 B = 7073.418712 C = 7848.663655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.604 5.604 3 C -0.249 4.249 4 H 0.078 0.922 5 C 0.032 3.968 6 N -0.901 5.901 7 Si 0.878 3.122 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.274 1.274 11 C 0.109 3.891 12 C 0.077 3.923 13 H 0.084 0.916 14 O -0.522 6.522 15 C 0.077 3.923 16 N -0.596 5.596 17 C 0.075 3.925 18 C 0.569 3.431 19 O -0.518 6.518 20 C -0.143 4.143 21 C -0.050 4.050 22 C -0.164 4.164 23 C 0.116 3.884 24 N -0.456 5.456 25 C 0.105 3.895 26 C 0.319 3.681 27 F -0.190 7.190 28 F -0.161 7.161 29 H 0.009 0.991 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.371 0.629 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -20.857 -13.361 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.328 5.328 3 C -0.377 4.377 4 H 0.095 0.905 5 C -0.167 4.167 6 N -0.544 5.544 7 Si 0.710 3.290 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.199 1.199 11 C -0.018 4.018 12 C 0.013 3.987 13 H 0.102 0.898 14 O -0.326 6.326 15 C -0.046 4.046 16 N -0.328 5.328 17 C -0.068 4.068 18 C 0.355 3.645 19 O -0.393 6.393 20 C -0.149 4.149 21 C -0.076 4.076 22 C -0.184 4.184 23 C -0.041 4.041 24 N -0.164 5.164 25 C -0.035 4.035 26 C 0.264 3.736 27 F -0.171 7.171 28 F -0.142 7.142 29 H 0.027 0.973 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.218 0.782 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.628 -19.691 -13.926 24.126 hybrid contribution 0.236 -1.539 1.591 2.226 sum -0.392 -21.230 -12.335 24.556 Atomic orbital electron populations 1.21033 0.84408 0.98498 0.97773 1.43883 1.00667 1.01731 1.86476 1.18719 1.04627 0.89708 1.24692 0.90467 1.25338 0.97085 0.96412 0.97862 1.69840 1.09548 1.33886 1.41089 0.86938 0.77601 0.80747 0.83673 1.21599 1.23223 1.19934 1.21849 0.97022 0.88877 0.94050 1.22941 0.93484 0.85819 0.96459 0.89791 1.86600 1.28872 1.62024 1.55061 1.22555 1.02660 0.98379 0.81024 1.47515 1.15523 1.55193 1.14563 1.21957 0.92274 0.95123 0.97459 1.17821 0.82563 0.78786 0.85332 1.90808 1.42475 1.41090 1.64971 1.20741 1.02697 0.95812 0.95624 1.21878 0.94558 0.95130 0.96039 1.22222 1.00550 1.01539 0.94090 1.23025 0.92883 0.87498 1.00714 1.67460 1.15086 1.20721 1.13115 1.21962 0.95561 0.96194 0.89781 1.20177 0.91495 0.81681 0.80236 1.93008 1.95832 1.72315 1.55974 1.93247 1.59641 1.88427 1.72850 0.97329 0.94240 0.95344 0.92908 0.93819 0.92738 0.78185 0.90051 0.89455 0.92550 0.90356 0.91312 0.83450 0.83531 0.81548 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.57 10.69 59.84 0.64 3.21 16 2 N -0.60 -14.50 2.51 -181.12 -0.45 -14.96 16 3 C -0.25 -7.11 9.49 -15.06 -0.14 -7.25 16 4 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 5 C 0.03 0.94 5.37 -17.43 -0.09 0.85 16 6 N -0.90 -28.08 13.97 55.49 0.78 -27.30 16 7 Si 0.88 22.44 24.76 -169.99 -4.21 18.23 16 8 H -0.29 -7.04 6.72 56.52 0.38 -6.66 16 9 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 10 H -0.27 -6.84 7.08 56.52 0.40 -6.44 16 11 C 0.11 2.27 4.11 -4.04 -0.02 2.26 16 12 C 0.08 1.42 3.48 -26.73 -0.09 1.32 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 O -0.52 -11.67 10.19 -38.31 -0.39 -12.06 16 15 C 0.08 1.12 5.15 -4.04 -0.02 1.10 16 16 N -0.60 -7.82 2.83 -182.69 -0.52 -8.34 16 17 C 0.08 0.66 9.06 59.85 0.54 1.20 16 18 C 0.57 8.53 5.20 -12.34 -0.06 8.47 16 19 O -0.52 -9.46 13.96 2.23 0.03 -9.43 16 20 C -0.14 -1.80 4.88 -104.82 -0.51 -2.31 16 21 C -0.05 -0.42 7.88 -38.87 -0.31 -0.72 16 22 C -0.16 -1.08 10.10 -39.50 -0.40 -1.48 16 23 C 0.12 0.98 11.17 -17.46 -0.20 0.78 16 24 N -0.46 -5.77 9.78 -9.14 -0.09 -5.86 16 25 C 0.11 1.47 6.60 -82.17 -0.54 0.93 16 26 C 0.32 5.09 4.69 36.01 0.17 5.26 16 27 F -0.19 -3.18 16.92 2.25 0.04 -3.14 16 28 F -0.16 -3.11 13.67 2.25 0.03 -3.08 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.79 8.08 -51.93 -0.42 0.38 16 31 H 0.03 0.47 8.03 -51.93 -0.42 0.06 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 33 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.05 1.26 2.81 -51.93 -0.15 1.12 16 35 H 0.37 8.78 8.58 45.56 0.39 9.17 16 36 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.09 1.43 7.37 -51.93 -0.38 1.04 16 38 H 0.06 0.33 7.12 -51.93 -0.37 -0.04 16 39 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 40 H 0.07 0.60 6.19 -51.93 -0.32 0.28 16 41 H 0.15 0.85 6.33 -52.48 -0.33 0.52 16 42 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 43 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.13 1.91 7.88 -51.93 -0.41 1.50 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -36.45 362.71 -5.29 -41.74 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.93 Total: 5.12 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -1.03 Total: 13.62 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.29 Total: -56.46 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.36 Total: -21.49 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.21 Total: 18.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.45 -5.29 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278865024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.952 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds