Wall clock time and date at job start Wed Apr 1 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46940 * 2 1 4 4 N 1.46495 * 109.46839 * 240.00220 * 2 1 3 5 5 C 1.36935 * 120.00276 * 85.00362 * 4 2 1 6 6 H 1.08007 * 119.99690 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00501 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99737 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00164 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47209 * 90.00206 * 9 7 5 11 11 H 1.48501 * 109.47159 * 210.00074 * 9 7 5 12 12 H 1.48503 * 109.47265 * 329.99930 * 9 7 5 13 13 C 1.50703 * 109.47004 * 120.00209 * 2 1 3 14 14 C 1.38232 * 119.99624 * 260.00017 * 13 2 1 15 15 C 1.38241 * 119.99525 * 180.02562 * 14 13 2 16 16 C 1.38239 * 120.00039 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99942 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47146 * 90.00008 * 17 16 15 19 19 C 1.34782 * 120.00201 * 180.02562 * 18 17 16 20 20 O 1.21531 * 119.99843 * 359.97438 * 19 18 17 21 21 C 1.47995 * 119.99845 * 180.02562 * 19 18 17 22 22 C 1.39903 * 120.94601 * 0.23534 * 21 19 18 23 23 C 1.38041 * 119.03426 * 180.27832 * 22 21 19 24 24 N 1.31859 * 120.98258 * 359.72512 * 23 22 21 25 25 C 1.31716 * 122.09710 * 0.02562 * 24 23 22 26 26 C 1.38538 * 120.84601 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.53935 * 179.97438 * 26 25 24 28 28 C 1.38240 * 119.99921 * 0.25437 * 16 15 14 29 29 C 1.38234 * 119.99850 * 359.48810 * 28 16 15 30 30 H 1.09003 * 109.47206 * 59.99940 * 1 2 3 31 31 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47171 * 299.99750 * 1 2 3 33 33 H 0.97004 * 120.00249 * 265.00007 * 4 2 1 34 34 H 0.97001 * 120.00432 * 179.97438 * 8 7 5 35 35 H 1.07988 * 120.00519 * 0.02562 * 14 13 2 36 36 H 1.07990 * 119.99899 * 179.97438 * 15 14 13 37 37 H 1.08994 * 109.47309 * 329.99994 * 17 16 15 38 38 H 1.08999 * 109.46902 * 209.99583 * 17 16 15 39 39 H 0.97008 * 119.99993 * 359.97438 * 18 17 16 40 40 H 1.08002 * 120.48201 * 0.02562 * 22 21 19 41 41 H 1.08005 * 119.50718 * 179.75268 * 23 22 21 42 42 H 1.07998 * 119.58275 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.99564 * 179.73403 * 28 16 15 44 44 H 1.08002 * 119.99841 * 180.22558 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8919 1.0405 -2.4243 7 6 2.6123 -0.6616 -3.5091 8 7 2.9262 -1.9384 -3.4498 9 14 2.7900 0.2702 -5.1183 10 1 4.1519 0.8561 -5.2032 11 1 2.5803 -0.6614 -6.2555 12 1 1.7792 1.3566 -5.1755 13 6 2.0324 -0.7105 1.2305 14 6 2.4587 0.0194 2.3242 15 6 2.9200 -0.6323 3.4527 16 6 2.9543 -2.0139 3.4876 17 6 3.4577 -2.7243 4.7175 18 7 2.3389 -2.9735 5.6298 19 6 2.5529 -3.6011 6.8032 20 8 3.6741 -3.9607 7.1043 21 6 1.4225 -3.8533 7.7245 22 6 0.1230 -3.4531 7.3952 23 6 -0.9011 -3.7031 8.2864 24 7 -0.6701 -4.3143 9.4318 25 6 0.5355 -4.7131 9.7816 26 6 1.6227 -4.5028 8.9490 27 9 2.8567 -4.9140 9.3143 28 6 2.5324 -2.7436 2.3919 29 6 2.0662 -2.0920 1.2654 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.2495 -2.3957 -4.2418 35 1 2.4315 1.0986 2.2972 36 1 3.2534 -0.0622 4.3071 37 1 4.2020 -2.1038 5.2165 38 1 3.9099 -3.6733 4.4294 39 1 1.4440 -2.6861 5.3897 40 1 -0.0754 -2.9522 6.4592 41 1 -1.9066 -3.3938 8.0418 42 1 0.6785 -5.2104 10.7295 43 1 2.5633 -3.8228 2.4175 44 1 1.7331 -2.6622 0.4108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280350369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:08 Heat of formation + Delta-G solvation = -5.350383 kcal Electronic energy + Delta-G solvation = -27830.894008 eV Core-core repulsion = 23662.977870 eV Total energy + Delta-G solvation = -4167.916138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.36968 -40.95782 -39.79564 -39.11236 -36.10860 -34.77446 -33.38145 -32.31959 -31.46487 -30.80825 -30.33940 -28.42378 -26.60378 -25.06511 -24.06560 -23.75287 -22.67089 -21.77658 -21.26471 -19.83193 -18.91905 -17.88517 -17.75078 -17.47774 -16.43459 -16.24737 -16.12325 -15.69396 -15.46320 -14.95777 -14.92357 -14.80173 -14.37316 -14.24337 -13.94406 -13.82415 -13.47143 -13.43609 -13.19819 -13.08669 -12.68870 -12.62957 -12.36643 -12.00673 -11.62406 -11.30664 -10.98918 -10.89032 -10.82483 -10.68671 -10.53370 -10.35407 -10.11118 -10.05213 -9.73470 -9.59286 -9.44364 -9.03134 -8.73350 -8.42313 -7.05404 -5.83544 -3.12595 -0.01539 0.29433 1.34590 1.59592 2.38331 2.70723 3.12929 3.37977 3.39430 3.44609 3.46228 3.80985 3.89929 4.01717 4.07436 4.18507 4.53595 4.58491 4.73208 4.88896 5.00070 5.11870 5.13281 5.17181 5.21857 5.31012 5.49901 5.50623 5.64473 5.70070 5.87777 5.90825 5.94577 5.97314 6.16593 6.23117 6.27525 6.42661 6.54176 6.62833 6.68240 6.88034 7.02822 7.08384 7.14659 7.18774 7.63761 7.70859 8.34597 9.46070 10.01049 10.36052 11.39000 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.001834 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.657458 B =15264.718898 C =15745.973506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.051 4.051 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.134 4.134 17 C 0.167 3.833 18 N -0.712 5.712 19 C 0.554 3.446 20 O -0.517 6.517 21 C -0.125 4.125 22 C -0.111 4.111 23 C 0.085 3.915 24 N -0.441 5.441 25 C 0.071 3.929 26 C 0.106 3.894 27 F -0.105 7.105 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.119 0.881 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 -2.691 25.268 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.207 1.207 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.045 3.955 18 N -0.365 5.365 19 C 0.339 3.661 20 O -0.393 6.393 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.071 4.071 24 N -0.150 5.150 25 C -0.088 4.088 26 C 0.083 3.917 27 F -0.083 7.083 28 C -0.116 4.116 29 C -0.124 4.124 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.238 0.762 40 H 0.168 0.832 41 H 0.189 0.811 42 H 0.193 0.807 43 H 0.137 0.863 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.832 -2.994 25.866 26.920 hybrid contribution 0.712 0.389 -1.716 1.898 sum -6.120 -2.605 24.150 25.049 Atomic orbital electron populations 1.22423 0.98222 1.01135 1.00175 1.19259 0.92179 0.95032 0.84200 0.92592 1.42520 1.78229 1.10695 1.04906 1.19234 1.36837 0.94012 0.87114 0.91053 1.24750 1.01934 0.96011 0.98151 1.69651 1.50603 1.08679 1.29029 0.86180 0.77826 0.78596 0.83514 1.21689 1.21750 1.20720 1.20560 0.95008 0.94057 0.95577 1.21025 0.99989 0.99860 0.93118 1.20933 0.99499 0.93443 0.98094 1.19604 1.04595 0.93862 0.95399 1.20225 0.87890 1.00333 0.87054 1.46026 1.12667 1.59312 1.18460 1.17914 0.87761 0.78840 0.81542 1.90869 1.23272 1.50381 1.74793 1.20636 0.95560 1.02145 0.95396 1.22396 0.91262 0.98133 1.01345 1.22869 1.00140 0.95156 0.88972 1.67609 1.22008 1.07821 1.17525 1.23035 0.86446 0.99207 1.00131 1.18923 0.82179 0.96942 0.93673 1.91634 1.38811 1.86983 1.90862 1.21029 0.98111 0.99525 0.92952 1.21102 0.99096 0.94445 0.97754 0.92349 0.93325 0.94341 0.77994 0.93420 0.86048 0.86434 0.90406 0.90312 0.76175 0.83154 0.81053 0.80744 0.86266 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.47 37.16 0.35 -2.35 16 2 C 0.20 3.83 3.09 -69.08 -0.21 3.62 16 3 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.33 5.07 -54.55 -0.28 -17.60 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 9 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C -0.05 -0.82 4.95 -104.62 -0.52 -1.34 16 14 C -0.12 -1.64 9.67 -39.58 -0.38 -2.03 16 15 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 16 C -0.13 -1.53 5.25 -104.62 -0.55 -2.08 16 17 C 0.17 1.72 5.80 -5.20 -0.03 1.69 16 18 N -0.71 -6.35 5.51 -62.39 -0.34 -6.70 16 19 C 0.55 6.05 7.79 -12.26 -0.10 5.95 16 20 O -0.52 -7.66 15.48 5.34 0.08 -7.58 16 21 C -0.13 -1.10 5.91 -104.60 -0.62 -1.72 16 22 C -0.11 -0.63 9.61 -39.03 -0.38 -1.01 16 23 C 0.08 0.47 11.17 -17.61 -0.20 0.28 16 24 N -0.44 -3.30 10.33 -13.24 -0.14 -3.44 16 25 C 0.07 0.51 11.17 -17.49 -0.20 0.32 16 26 C 0.11 0.97 7.33 -38.79 -0.28 0.68 16 27 F -0.10 -1.18 15.72 2.25 0.04 -1.15 16 28 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 29 C -0.11 -1.65 9.06 -39.58 -0.36 -2.01 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.38 9.75 6.07 -40.82 -0.25 9.51 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.12 1.47 8.04 -52.49 -0.42 1.04 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.40 2.66 6.60 -40.82 -0.27 2.39 16 40 H 0.15 0.45 6.54 -52.49 -0.34 0.11 16 41 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16 42 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.13 2.19 6.92 -52.49 -0.36 1.83 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -33.26 382.22 -9.06 -42.32 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.40 Total: 8.49 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -4.48 Total: -10.25 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.03 Total: -54.49 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.08 Total: -7.58 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.26 -9.06 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280350369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.966 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds