Wall clock time and date at job start Wed Apr 1 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46940 * 2 1 4 4 N 1.46495 * 109.46839 * 240.00220 * 2 1 3 5 5 C 1.36935 * 120.00276 * 85.00362 * 4 2 1 6 6 H 1.08007 * 119.99690 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00501 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99737 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00164 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47209 * 90.00206 * 9 7 5 11 11 H 1.48501 * 109.47159 * 210.00074 * 9 7 5 12 12 H 1.48503 * 109.47265 * 329.99930 * 9 7 5 13 13 C 1.50703 * 109.47004 * 120.00209 * 2 1 3 14 14 C 1.38232 * 119.99624 * 260.00017 * 13 2 1 15 15 C 1.38241 * 119.99525 * 180.02562 * 14 13 2 16 16 C 1.38239 * 120.00039 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99942 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47146 * 90.00008 * 17 16 15 19 19 C 1.34782 * 120.00201 * 180.02562 * 18 17 16 20 20 O 1.21531 * 119.99843 * 359.97438 * 19 18 17 21 21 C 1.47995 * 119.99845 * 180.02562 * 19 18 17 22 22 C 1.39903 * 120.94601 * 0.23534 * 21 19 18 23 23 C 1.38041 * 119.03426 * 180.27832 * 22 21 19 24 24 N 1.31859 * 120.98258 * 359.72512 * 23 22 21 25 25 C 1.31716 * 122.09710 * 0.02562 * 24 23 22 26 26 C 1.38538 * 120.84601 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.53935 * 179.97438 * 26 25 24 28 28 C 1.38240 * 119.99921 * 0.25437 * 16 15 14 29 29 C 1.38234 * 119.99850 * 359.48810 * 28 16 15 30 30 H 1.09003 * 109.47206 * 59.99940 * 1 2 3 31 31 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47171 * 299.99750 * 1 2 3 33 33 H 0.97004 * 120.00249 * 265.00007 * 4 2 1 34 34 H 0.97001 * 120.00432 * 179.97438 * 8 7 5 35 35 H 1.07988 * 120.00519 * 0.02562 * 14 13 2 36 36 H 1.07990 * 119.99899 * 179.97438 * 15 14 13 37 37 H 1.08994 * 109.47309 * 329.99994 * 17 16 15 38 38 H 1.08999 * 109.46902 * 209.99583 * 17 16 15 39 39 H 0.97008 * 119.99993 * 359.97438 * 18 17 16 40 40 H 1.08002 * 120.48201 * 0.02562 * 22 21 19 41 41 H 1.08005 * 119.50718 * 179.75268 * 23 22 21 42 42 H 1.07998 * 119.58275 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.99564 * 179.73403 * 28 16 15 44 44 H 1.08002 * 119.99841 * 180.22558 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3757 6 1 1.8919 1.0405 -2.4243 7 6 2.6123 -0.6616 -3.5091 8 7 2.9262 -1.9384 -3.4498 9 14 2.7900 0.2702 -5.1183 10 1 4.1519 0.8561 -5.2032 11 1 2.5803 -0.6614 -6.2555 12 1 1.7792 1.3566 -5.1755 13 6 2.0324 -0.7105 1.2305 14 6 2.4587 0.0194 2.3242 15 6 2.9200 -0.6323 3.4527 16 6 2.9543 -2.0139 3.4876 17 6 3.4577 -2.7243 4.7175 18 7 2.3389 -2.9735 5.6298 19 6 2.5529 -3.6011 6.8032 20 8 3.6741 -3.9607 7.1043 21 6 1.4225 -3.8533 7.7245 22 6 0.1230 -3.4531 7.3952 23 6 -0.9011 -3.7031 8.2864 24 7 -0.6701 -4.3143 9.4318 25 6 0.5355 -4.7131 9.7816 26 6 1.6227 -4.5028 8.9490 27 9 2.8567 -4.9140 9.3143 28 6 2.5324 -2.7436 2.3919 29 6 2.0662 -2.0920 1.2654 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 -1.1527 34 1 3.2495 -2.3957 -4.2418 35 1 2.4315 1.0986 2.2972 36 1 3.2534 -0.0622 4.3071 37 1 4.2020 -2.1038 5.2165 38 1 3.9099 -3.6733 4.4294 39 1 1.4440 -2.6861 5.3897 40 1 -0.0754 -2.9522 6.4592 41 1 -1.9066 -3.3938 8.0418 42 1 0.6785 -5.2104 10.7295 43 1 2.5633 -3.8228 2.4175 44 1 1.7331 -2.6622 0.4108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280350369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:07 Heat of formation + Delta-G solvation = -26.475956 kcal Electronic energy + Delta-G solvation = -27831.810082 eV Core-core repulsion = 23662.977870 eV Total energy + Delta-G solvation = -4168.832212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.08240 -41.61970 -40.69542 -40.04994 -37.46320 -35.93274 -34.33877 -33.74508 -32.00334 -31.90568 -31.59936 -30.02924 -27.55755 -26.05199 -25.54396 -24.46897 -23.77717 -22.96578 -22.04226 -21.11552 -19.63088 -19.37032 -18.50780 -18.38861 -17.31497 -17.15873 -16.93478 -16.81040 -16.51623 -16.22069 -15.85760 -15.73607 -15.41147 -15.10962 -15.03249 -14.84177 -14.55276 -14.49507 -14.40715 -14.25249 -13.84638 -13.61538 -13.43767 -13.19732 -12.98526 -12.78813 -12.70851 -12.47003 -12.14930 -12.01778 -11.66121 -11.59696 -11.51123 -11.14370 -11.00433 -10.72795 -10.29083 -10.10581 -9.78744 -9.56142 -9.01969 -7.94226 -5.22295 -0.62529 -0.20141 0.28732 0.53640 1.47520 1.48672 1.56892 1.64532 1.91292 2.56026 2.57065 2.82176 2.88512 3.35156 3.39602 3.40541 3.53411 3.63861 3.67181 3.87617 3.98844 4.04702 4.16489 4.28481 4.34289 4.48452 4.54855 4.60484 4.62139 4.69858 4.74177 4.79007 4.79926 5.02713 5.07282 5.13103 5.15954 5.23366 5.42814 5.43655 5.50966 5.57080 5.62549 5.85084 6.09624 6.28305 6.29617 6.65399 6.94356 7.34472 8.09899 8.33035 9.29283 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.001834 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.657458 B =15264.718898 C =15745.973506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 H 0.054 0.946 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.289 1.289 11 H -0.298 1.298 12 H -0.268 1.268 13 C -0.071 4.071 14 C -0.120 4.120 15 C -0.090 4.090 16 C -0.117 4.117 17 C 0.172 3.828 18 N -0.698 5.698 19 C 0.554 3.446 20 O -0.564 6.564 21 C -0.140 4.140 22 C -0.097 4.097 23 C 0.091 3.909 24 N -0.457 5.457 25 C 0.075 3.925 26 C 0.079 3.921 27 F -0.126 7.126 28 C -0.096 4.096 29 C -0.123 4.123 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.416 0.584 40 H 0.182 0.818 41 H 0.207 0.793 42 H 0.194 0.806 43 H 0.132 0.868 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -1.141 26.900 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.089 3.911 3 H 0.072 0.928 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.800 3.200 10 H -0.217 1.217 11 H -0.225 1.225 12 H -0.193 1.193 13 C -0.072 4.072 14 C -0.139 4.139 15 C -0.109 4.109 16 C -0.117 4.117 17 C 0.049 3.951 18 N -0.350 5.350 19 C 0.341 3.659 20 O -0.443 6.443 21 C -0.152 4.152 22 C -0.117 4.117 23 C -0.065 4.065 24 N -0.165 5.165 25 C -0.084 4.084 26 C 0.056 3.944 27 F -0.104 7.104 28 C -0.115 4.115 29 C -0.142 4.142 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.199 0.801 41 H 0.223 0.777 42 H 0.211 0.789 43 H 0.150 0.850 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.382 -1.394 27.530 28.811 hybrid contribution 1.090 -0.062 -2.091 2.359 sum -7.292 -1.456 25.439 26.504 Atomic orbital electron populations 1.22248 0.96586 1.00973 1.00970 1.19444 0.93204 0.94669 0.83734 0.92812 1.42735 1.78512 1.10445 1.05968 1.19632 1.34745 0.94299 0.88185 0.90451 1.25534 1.03081 0.96905 1.01441 1.69810 1.52677 1.10213 1.29379 0.85172 0.77821 0.77478 0.79496 1.21675 1.22450 1.19279 1.20332 0.97207 0.94199 0.95510 1.21191 0.99324 1.00680 0.92681 1.21219 0.97939 0.93483 0.98231 1.19667 1.03011 0.93966 0.95065 1.20117 0.88302 1.00011 0.86673 1.45838 1.13044 1.58522 1.17599 1.18226 0.87706 0.78091 0.81879 1.90847 1.25222 1.52405 1.75838 1.20616 0.96111 1.03378 0.95064 1.22704 0.89685 0.96991 1.02342 1.23495 1.01546 0.93478 0.87953 1.67699 1.21826 1.08429 1.18595 1.23282 0.85856 0.98757 1.00473 1.19235 0.81991 0.98447 0.94703 1.91574 1.40162 1.87510 1.91156 1.21124 0.97613 1.00296 0.92462 1.20966 1.00706 0.94436 0.98054 0.94054 0.93963 0.90898 0.79247 0.94145 0.84398 0.83433 0.90014 0.90919 0.74543 0.80126 0.77655 0.78944 0.85047 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.47 71.98 0.68 -4.20 16 2 C 0.20 7.38 3.09 44.25 0.14 7.52 16 3 H 0.05 2.01 7.94 -2.39 -0.02 1.99 16 4 N -0.74 -36.00 5.07 -326.50 -1.66 -37.65 16 5 C -0.24 -12.84 9.93 84.03 0.83 -12.01 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 8 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 9 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 C -0.07 -2.24 4.95 -19.87 -0.10 -2.34 16 14 C -0.12 -2.94 9.67 22.27 0.22 -2.72 16 15 C -0.09 -1.78 9.70 22.27 0.22 -1.57 16 16 C -0.12 -2.36 5.25 -19.86 -0.10 -2.46 16 17 C 0.17 3.14 5.80 85.63 0.50 3.64 16 18 N -0.70 -10.74 5.51 -469.57 -2.59 -13.33 16 19 C 0.55 11.46 7.79 86.83 0.68 12.14 16 20 O -0.56 -16.76 15.48 -3.81 -0.06 -16.82 16 21 C -0.14 -2.25 5.91 -19.85 -0.12 -2.37 16 22 C -0.10 -0.79 9.61 22.63 0.22 -0.58 16 23 C 0.09 0.71 11.17 84.64 0.95 1.65 16 24 N -0.46 -5.78 10.33 -195.82 -2.02 -7.80 16 25 C 0.07 0.99 11.17 84.78 0.95 1.94 16 26 C 0.08 1.42 7.33 22.78 0.17 1.58 16 27 F -0.13 -2.95 15.72 44.97 0.71 -2.24 16 28 C -0.10 -2.36 9.70 22.27 0.22 -2.15 16 29 C -0.12 -3.84 9.06 22.27 0.20 -3.64 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.37 19.70 6.07 -92.71 -0.56 19.14 16 34 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.14 2.88 8.04 -2.92 -0.02 2.85 16 36 H 0.15 2.10 8.06 -2.92 -0.02 2.08 16 37 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 39 H 0.42 4.03 6.60 -92.70 -0.61 3.42 16 40 H 0.18 0.27 6.54 -2.91 -0.02 0.25 16 41 H 0.21 0.10 8.06 -2.91 -0.02 0.07 16 42 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.10 3.71 6.92 -2.91 -0.02 3.69 16 Total: -1.00 -74.75 382.22 2.67 -72.08 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.12 Total: 26.15 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 6.10 Total: -9.48 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -5.98 Total: -117.37 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.06 Total: -16.82 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.71 Total: -2.24 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.75 2.67 -72.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280350369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.599 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds