Wall clock time and date at job start Wed Apr 1 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.53000 * 109.46769 * 66.05138 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47299 * 179.97438 * 5 4 3 7 7 C 1.46508 * 120.00066 * 89.99461 * 6 5 4 8 8 C 1.34774 * 120.00040 * 269.99881 * 6 5 4 9 9 O 1.21278 * 119.99851 * 359.97438 * 8 6 5 10 10 C 1.50701 * 120.00270 * 179.97438 * 8 6 5 11 11 S 1.80996 * 109.47256 * 179.97438 * 10 8 6 12 12 C 1.76198 * 100.00024 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99859 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99886 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47369 * 59.99859 * 16 14 12 18 18 H 1.48501 * 109.47115 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47207 * 300.00060 * 16 14 12 20 20 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 21 21 C 1.50702 * 109.46939 * 293.95226 * 20 2 1 22 22 N 1.30885 * 125.91246 * 275.02173 * 21 20 2 23 23 C 1.33539 * 109.78465 * 180.02562 * 22 21 20 24 24 O 1.35864 * 125.59299 * 180.02562 * 23 22 21 25 25 N 1.31078 * 108.82302 * 0.02562 * 23 22 21 26 26 N 1.34352 * 125.91071 * 94.71911 * 21 20 2 27 27 H 0.97003 * 126.77776 * 0.02562 * 26 21 20 28 28 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 29 29 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 31 31 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 32 32 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99524 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99697 * 4 3 2 35 35 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 36 36 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 37 37 H 1.08998 * 109.46770 * 90.00276 * 7 6 5 38 38 H 1.08998 * 109.46959 * 210.00468 * 7 6 5 39 39 H 1.09001 * 109.46634 * 329.99962 * 7 6 5 40 40 H 1.09004 * 109.46922 * 300.00091 * 10 8 6 41 41 H 1.08999 * 109.47119 * 60.00072 * 10 8 6 42 42 H 0.96998 * 119.99797 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.47188 * 53.95311 * 20 2 1 44 44 H 1.08993 * 109.47221 * 173.95234 * 20 2 1 45 45 H 0.96697 * 114.00215 * 89.99831 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1793 3.4859 1.3181 6 7 1.8303 4.1430 2.5802 7 6 2.7384 4.0564 3.7266 8 6 0.6739 4.8270 2.6866 9 8 -0.0776 4.8989 1.7374 10 6 0.3147 5.5024 3.9850 11 16 -1.2846 6.3319 3.8113 12 6 -1.4513 7.0164 5.4262 13 1 -0.6789 6.8547 6.1636 14 6 -2.5751 7.7635 5.7508 15 7 -3.5167 7.9602 4.8522 16 14 -2.7521 8.4887 7.4631 17 1 -1.6191 9.4108 7.7298 18 1 -4.0318 9.2367 7.5540 19 1 -2.7466 7.3944 8.4671 20 6 1.9954 -0.7659 -1.1377 21 6 1.6369 -2.2204 -0.9730 22 7 2.3121 -3.1041 -0.2830 23 6 1.7070 -4.2924 -0.3554 24 8 2.1343 -5.4350 0.2427 25 7 0.6332 -4.1756 -1.0980 26 7 0.5657 -2.8330 -1.5043 27 1 -0.1175 -2.4286 -2.0617 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 0.5472 2.0844 1.4266 34 1 2.0658 1.5014 2.1492 35 1 3.2635 3.4593 1.2097 36 1 1.7446 4.0417 0.4873 37 1 3.4403 4.8898 3.6978 38 1 2.1619 4.0987 4.6507 39 1 3.2883 3.1163 3.6843 40 1 0.2534 4.7566 4.7776 41 1 1.0794 6.2374 4.2359 42 1 -4.3022 8.4820 5.0791 43 1 1.5610 -0.3871 -2.0629 44 1 3.0796 -0.6610 -1.1758 45 1 1.7830 -5.5677 1.1338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280787538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:53 Heat of formation + Delta-G solvation = 30.186087 kcal Electronic energy + Delta-G solvation = -26488.653959 eV Core-core repulsion = 22477.642711 eV Total energy + Delta-G solvation = -4011.011248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68183 -39.56676 -38.41618 -37.68835 -35.58226 -33.06717 -32.74752 -32.44440 -31.35276 -29.22450 -28.20927 -27.23470 -25.92738 -25.45187 -23.59157 -22.88662 -21.39560 -21.10606 -19.21923 -18.99969 -18.06546 -17.68876 -16.85280 -16.68219 -16.12197 -15.98972 -15.84878 -15.34672 -15.23426 -14.81824 -14.43054 -14.32524 -14.00032 -13.73460 -13.28647 -13.08955 -12.90263 -12.66863 -12.61306 -12.45055 -12.42675 -12.23970 -12.07800 -11.98920 -11.70425 -11.58712 -11.05977 -11.05200 -10.80932 -10.72645 -10.57559 -10.34968 -10.06975 -9.83039 -9.38689 -9.07406 -8.89780 -8.55471 -8.25181 -6.52015 -6.23190 -3.93901 0.94498 1.88819 2.15800 2.90639 2.97779 3.03338 3.22175 3.24530 3.27811 3.47672 3.63162 3.90908 4.19072 4.25160 4.57204 4.71573 4.78007 4.83707 4.90504 5.05811 5.10405 5.11939 5.12481 5.18578 5.23193 5.34752 5.43543 5.46861 5.54724 5.59471 5.60534 5.63758 5.71078 5.88717 5.94685 6.08959 6.12384 6.38537 6.46658 6.51312 6.65807 6.98071 7.51249 7.52773 7.57876 8.33427 8.53850 9.22060 10.84168 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.001695 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.483392 B =16517.682471 C =16931.623366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.532 5.532 3 C 0.062 3.938 4 C -0.133 4.133 5 C 0.120 3.880 6 N -0.625 5.625 7 C 0.080 3.920 8 C 0.533 3.467 9 O -0.517 6.517 10 C -0.151 4.151 11 S -0.062 6.062 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.129 3.871 21 C 0.315 3.685 22 N -0.528 5.528 23 C 0.404 3.596 24 O -0.441 6.441 25 N -0.311 5.311 26 N -0.468 5.468 27 H 0.445 0.555 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.117 -18.924 -11.117 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.257 5.257 3 C -0.066 4.066 4 C -0.172 4.172 5 C -0.004 4.004 6 N -0.360 5.360 7 C -0.063 4.063 8 C 0.321 3.679 9 O -0.391 6.391 10 C -0.301 4.301 11 S 0.164 5.836 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.002 4.002 21 C 0.036 3.964 22 N -0.266 5.266 23 C 0.084 3.916 24 O -0.241 6.241 25 N -0.154 5.154 26 N -0.191 5.191 27 H 0.292 0.708 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 13.227 -19.755 -12.499 26.860 hybrid contribution -0.136 0.966 1.734 1.990 sum 13.091 -18.789 -10.765 25.303 Atomic orbital electron populations 1.22590 0.86728 1.01728 1.02503 1.61873 1.08451 1.14523 1.40878 1.22083 1.00347 0.86308 0.97883 1.21974 1.02665 0.95341 0.97218 1.21297 0.99589 0.92354 0.87161 1.47849 1.21233 1.53784 1.13175 1.21771 0.93829 1.01662 0.89047 1.20345 0.80032 0.77608 0.89920 1.90680 1.48980 1.59794 1.39682 1.23561 1.06702 1.02843 0.97014 1.85361 1.14991 1.64381 1.18846 1.22820 1.08982 1.38560 0.98017 0.90987 1.24989 0.94771 0.95552 0.98247 1.70007 1.08645 1.37807 1.33843 0.86229 0.77643 0.79079 0.82582 1.19923 1.20811 1.19932 1.20631 1.03131 0.83048 0.93341 1.23957 0.84867 0.96430 0.91193 1.70288 1.32397 0.99560 1.24350 1.21190 0.88643 0.86371 0.95358 1.84901 1.71000 1.33054 1.35150 1.78235 1.20454 0.94770 1.21917 1.47860 1.22683 1.06303 1.42206 0.70840 0.94678 0.92143 0.89742 0.93815 0.90018 0.91000 0.90837 0.90789 0.89939 0.92729 0.90709 0.91280 0.89270 0.89285 0.92138 0.91747 0.86473 0.73268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.15 60.07 0.55 0.65 16 2 N -0.53 -3.97 4.75 -244.36 -1.16 -5.13 16 3 C 0.06 0.43 4.96 -3.82 -0.02 0.41 16 4 C -0.13 -1.26 5.46 -26.73 -0.15 -1.41 16 5 C 0.12 1.25 5.41 -4.04 -0.02 1.23 16 6 N -0.62 -8.23 2.87 -181.57 -0.52 -8.75 16 7 C 0.08 0.78 10.24 59.85 0.61 1.40 16 8 C 0.53 9.75 7.69 -10.99 -0.08 9.67 16 9 O -0.52 -11.30 15.44 5.56 0.09 -11.21 16 10 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 12 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 16 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.13 0.74 5.59 -4.97 -0.03 0.71 16 21 C 0.31 2.57 6.74 -155.72 -1.05 1.52 16 22 N -0.53 -5.77 11.21 -12.10 -0.14 -5.90 16 23 C 0.40 4.34 9.46 -91.24 -0.86 3.48 16 24 O -0.44 -3.87 13.66 -19.31 -0.26 -4.14 16 25 N -0.31 -3.21 12.81 29.18 0.37 -2.84 16 26 N -0.47 -3.42 6.87 32.62 0.22 -3.19 16 27 H 0.44 1.77 8.96 -182.33 -1.63 0.14 16 28 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.45 6.72 -51.93 -0.35 0.10 16 30 H 0.08 0.79 6.47 -51.93 -0.34 0.45 16 31 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.08 0.44 7.93 -51.93 -0.41 0.03 16 33 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 39 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 40 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 41 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.22 8.12 -51.93 -0.42 -0.21 16 44 H 0.12 0.58 7.93 -51.93 -0.41 0.17 16 45 H 0.41 1.46 9.06 45.56 0.41 1.87 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -38.43 392.62 -9.75 -48.19 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.09 Total: -2.00 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.68 Total: 1.99 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.49 Total: -51.03 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.18 Total: -15.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.43 -9.75 -48.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280787538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.375 kcal (2) G-P(sol) polarization free energy of solvation -38.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds