Wall clock time and date at job start Wed Apr 1 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.47129 * 2 1 4 4 C 1.86306 * 109.46948 * 240.00255 * 2 1 3 5 5 C 1.86797 * 109.47220 * 120.00306 * 2 1 3 6 6 C 1.38235 * 120.00169 * 89.99978 * 5 2 1 7 7 C 1.38238 * 120.00121 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00055 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00139 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46727 * 89.99793 * 9 8 7 11 11 O 1.21297 * 120.00357 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00001 * 179.97438 * 10 9 8 13 13 C 1.40588 * 120.00316 * 180.02562 * 12 10 9 14 14 C 1.40654 * 126.08389 * 0.02562 * 13 12 10 15 15 N 1.30905 * 108.38683 * 179.72009 * 14 13 12 16 16 N 1.40064 * 108.40777 * 0.43987 * 15 14 13 17 17 C 1.37321 * 126.06857 * 179.82149 * 16 15 14 18 18 H 1.07998 * 120.00111 * 173.76490 * 17 16 15 19 19 C 1.38990 * 120.00353 * 354.03771 * 17 16 15 20 20 N 1.31294 * 119.99607 * 5.58222 * 19 17 16 21 21 Si 1.86794 * 120.00402 * 185.58712 * 19 17 16 22 22 H 1.48500 * 109.47486 * 94.97709 * 21 19 17 23 23 H 1.48508 * 109.47057 * 214.97869 * 21 19 17 24 24 H 1.48506 * 109.47163 * 334.97268 * 21 19 17 25 25 C 1.35688 * 126.08302 * 180.02562 * 13 12 10 26 26 C 1.38238 * 119.99935 * 0.25310 * 8 7 6 27 27 C 1.38234 * 120.00007 * 270.02007 * 5 2 1 28 28 H 1.09000 * 109.46725 * 299.99589 * 1 2 3 29 29 H 1.08998 * 109.46995 * 59.99821 * 1 2 3 30 30 H 1.08993 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47375 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47109 * 300.00426 * 3 2 1 33 33 H 1.09000 * 109.46982 * 60.00568 * 3 2 1 34 34 H 1.08995 * 109.46863 * 300.00104 * 4 2 1 35 35 H 1.09002 * 109.47076 * 59.99705 * 4 2 1 36 36 H 1.08994 * 109.46951 * 179.97438 * 4 2 1 37 37 H 1.08003 * 119.99960 * 359.97438 * 6 5 2 38 38 H 1.08002 * 119.99694 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47079 * 330.00170 * 9 8 7 40 40 H 1.08997 * 109.46943 * 209.99900 * 9 8 7 41 41 H 0.97003 * 120.00020 * 0.02562 * 12 10 9 42 42 H 1.07994 * 125.79949 * 359.97314 * 14 13 12 43 43 H 0.96998 * 120.00233 * 180.02562 * 20 19 17 44 44 H 1.07997 * 126.24694 * 0.03480 * 25 13 12 45 45 H 1.07996 * 119.99853 * 179.72845 * 26 8 7 46 46 H 1.07998 * 120.00046 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2432 1.4909 7 6 3.1765 -2.8950 2.6197 8 6 3.4069 -2.1842 3.7826 9 6 3.9081 -2.8948 5.0134 10 6 5.4151 -2.8959 5.0139 11 8 6.0224 -2.3708 4.1046 12 7 6.0882 -3.4794 6.0254 13 6 7.4940 -3.4800 6.0262 14 6 8.3233 -2.9119 5.0424 15 7 9.5701 -3.1062 5.3908 16 7 9.5865 -3.8118 6.6005 17 6 10.7058 -4.2097 7.2894 18 1 10.6071 -4.6617 8.2652 19 6 11.9662 -4.0254 6.7332 20 7 12.0951 -3.3735 5.6009 21 14 13.4766 -4.7054 7.5966 22 1 13.8115 -6.0377 7.0325 23 1 14.6208 -3.7805 7.3944 24 1 13.1986 -4.8385 9.0493 25 6 8.2924 -4.0287 6.9763 26 6 3.1720 -0.8223 3.8183 27 6 2.7157 -0.1698 2.6882 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.5741 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1208 2.2702 0.8900 34 1 2.1206 -1.9058 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5740 -0.8778 -1.5215 37 1 2.5357 -2.7987 0.5824 38 1 3.3561 -3.9597 2.5930 39 1 3.5440 -3.9222 5.0133 40 1 3.5448 -2.3805 5.9031 41 1 5.6026 -3.8990 6.7528 42 1 7.9883 -2.3988 4.1531 43 1 12.9746 -3.2452 5.2125 44 1 7.9638 -4.5436 7.8670 45 1 3.3478 -0.2677 4.7281 46 1 2.5350 0.8946 2.7152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292205531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:13 Heat of formation + Delta-G solvation = 10.907810 kcal Electronic energy + Delta-G solvation = -25836.419218 eV Core-core repulsion = 22155.874841 eV Total energy + Delta-G solvation = -3680.544377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71821 -40.58350 -39.35221 -35.89842 -34.94648 -33.64953 -32.22175 -31.73807 -29.98210 -29.39350 -28.26828 -28.22489 -28.11709 -26.57762 -23.35460 -23.10313 -22.62864 -21.39414 -21.11977 -19.32164 -17.93649 -17.41671 -17.35672 -16.77259 -16.58158 -15.88279 -15.64294 -15.62566 -15.01065 -14.87131 -14.78428 -14.22306 -14.12371 -14.00111 -13.86378 -13.68688 -13.51027 -13.31021 -13.28045 -13.10223 -13.03666 -13.03063 -12.93583 -12.87259 -12.80012 -12.60377 -12.07291 -11.82172 -11.76857 -11.01649 -10.89151 -10.82404 -10.72332 -10.69347 -10.62611 -10.10306 -9.66452 -9.43009 -8.51628 -8.47753 -6.24854 0.42062 0.65848 1.22882 1.38877 1.55390 1.57406 1.87981 1.90838 2.05779 2.06738 2.17405 2.39892 2.53691 2.73226 2.91191 3.07445 3.13939 3.78257 4.03015 4.18112 4.26170 4.44226 4.46700 4.61049 4.63005 4.63362 4.82126 4.88001 4.89162 4.92034 4.92559 4.94839 4.97144 5.00392 5.09671 5.20102 5.29390 5.29598 5.51118 5.55174 5.62282 5.65275 5.72323 5.74700 5.77577 5.96139 6.29257 6.32737 6.73752 6.81308 7.44298 7.49634 7.69041 8.51879 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.001890 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.427981 B =14809.903732 C =15484.170746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.119 2.881 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.390 4.390 6 C -0.103 4.103 7 C -0.138 4.138 8 C -0.072 4.072 9 C -0.087 4.087 10 C 0.497 3.503 11 O -0.575 6.575 12 N -0.619 5.619 13 C -0.042 4.042 14 C -0.063 4.063 15 N -0.312 5.312 16 N -0.170 5.170 17 C -0.355 4.355 18 H 0.141 0.859 19 C -0.008 4.008 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.241 1.241 25 C -0.081 4.081 26 C -0.138 4.138 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.421 0.579 42 H 0.163 0.837 43 H 0.276 0.724 44 H 0.189 0.811 45 H 0.121 0.879 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.568 3.231 -5.594 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.306 2.694 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.428 4.428 6 C -0.121 4.121 7 C -0.156 4.156 8 C -0.073 4.073 9 C -0.126 4.126 10 C 0.285 3.715 11 O -0.454 6.454 12 N -0.265 5.265 13 C -0.148 4.148 14 C -0.238 4.238 15 N -0.144 5.144 16 N 0.061 4.939 17 C -0.486 4.486 18 H 0.159 0.841 19 C -0.220 4.220 20 N -0.454 5.454 21 Si 0.839 3.161 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.164 1.164 25 C -0.231 4.231 26 C -0.156 4.156 27 C -0.121 4.121 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.258 0.742 42 H 0.180 0.820 43 H 0.086 0.914 44 H 0.206 0.794 45 H 0.139 0.861 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.757 3.828 -6.618 24.007 hybrid contribution 0.188 -0.572 0.885 1.070 sum -22.568 3.255 -5.734 23.512 Atomic orbital electron populations 1.26092 1.19904 1.04723 1.04851 0.77324 0.66304 0.64436 0.61327 1.26277 1.05911 1.19686 1.05008 1.26277 1.05909 1.08616 1.16085 1.28150 1.03868 0.99486 1.11344 1.21331 0.97574 0.95424 0.97766 1.21323 1.00362 1.00272 0.93616 1.19516 0.98315 0.94386 0.95046 1.20680 0.88378 1.04730 0.98815 1.21305 0.91140 0.77899 0.81119 1.90609 1.70872 1.46353 1.37542 1.42525 1.02525 1.56296 1.25142 1.17378 0.84106 1.13872 0.99490 1.24118 0.90509 1.07129 1.02015 1.78131 1.18735 1.17445 1.00136 1.44844 1.04604 1.31019 1.13423 1.20627 0.82756 1.41711 1.03480 0.84119 1.26919 1.03250 0.95327 0.96486 1.70413 1.25616 1.31818 1.17601 0.84565 0.74514 0.77787 0.79241 1.19166 1.20200 1.16419 1.22022 0.84038 1.13250 1.03779 1.21325 1.00373 0.94098 0.99767 1.21332 0.97583 1.00350 0.92827 0.91113 0.90130 0.91116 0.92256 0.90101 0.90855 0.90862 0.90102 0.92259 0.84610 0.86169 0.85280 0.85265 0.74168 0.81996 0.91448 0.79385 0.86138 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -4.47 8.65 113.37 0.98 -3.49 16 2 Si 1.12 12.90 12.32 68.60 0.85 13.75 16 3 C -0.46 -5.97 8.53 113.37 0.97 -5.00 16 4 C -0.46 -5.98 8.53 113.37 0.97 -5.01 16 5 C -0.39 -7.82 4.59 22.27 0.10 -7.72 16 6 C -0.10 -2.30 9.29 22.27 0.21 -2.09 16 7 C -0.14 -3.51 9.70 22.27 0.22 -3.29 16 8 C -0.07 -1.89 4.37 -19.87 -0.09 -1.97 16 9 C -0.09 -1.93 5.83 29.10 0.17 -1.76 16 10 C 0.50 17.08 7.79 87.66 0.68 17.76 16 11 O -0.57 -26.03 13.19 -3.08 -0.04 -26.07 16 12 N -0.62 -21.10 5.47 -303.93 -1.66 -22.77 16 13 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 14 C -0.06 -3.53 10.85 85.42 0.93 -2.60 16 15 N -0.31 -19.39 10.42 -56.47 -0.59 -19.98 16 16 N -0.17 -9.61 3.74 -190.01 -0.71 -10.32 16 17 C -0.35 -19.09 10.24 84.01 0.86 -18.23 16 18 H 0.14 6.53 7.84 -2.91 -0.02 6.51 16 19 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 20 N -0.83 -48.79 11.84 21.66 0.26 -48.53 16 21 Si 1.02 39.20 29.56 68.60 2.03 41.23 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 25 C -0.08 -3.78 11.49 83.38 0.96 -2.82 16 26 C -0.14 -3.50 9.70 22.27 0.22 -3.28 16 27 C -0.10 -2.29 9.29 22.27 0.21 -2.09 16 28 H 0.07 0.71 7.96 -2.39 -0.02 0.69 16 29 H 0.08 0.63 7.96 -2.39 -0.02 0.62 16 30 H 0.07 0.71 7.96 -2.39 -0.02 0.69 16 31 H 0.06 0.93 7.96 -2.38 -0.02 0.91 16 32 H 0.08 0.84 7.96 -2.39 -0.02 0.82 16 33 H 0.07 0.88 7.69 -2.39 -0.02 0.86 16 34 H 0.07 0.88 7.69 -2.39 -0.02 0.86 16 35 H 0.08 0.84 7.96 -2.39 -0.02 0.82 16 36 H 0.06 0.93 7.96 -2.39 -0.02 0.91 16 37 H 0.14 2.33 7.43 -2.91 -0.02 2.30 16 38 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.13 2.09 8.09 -2.39 -0.02 2.07 16 40 H 0.13 2.08 8.08 -2.39 -0.02 2.06 16 41 H 0.42 9.99 8.83 -92.71 -0.82 9.17 16 42 H 0.16 9.38 5.92 -2.91 -0.02 9.36 16 43 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.19 6.87 8.06 -2.91 -0.02 6.84 16 45 H 0.12 2.78 8.06 -2.91 -0.02 2.75 16 46 H 0.14 2.32 7.43 -2.91 -0.02 2.30 16 Total: -1.00 -83.53 396.32 8.40 -75.12 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: 0.17 Total: 40.85 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 8.10 Total: -43.29 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -2.70 Total: -101.59 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.04 Total: -26.07 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.87 Total: 54.98 kcal Total: -83.53 8.40 -75.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292205531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.033 kcal (2) G-P(sol) polarization free energy of solvation -83.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds