Wall clock time and date at job start Wed Apr 1 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 N 1.46496 * 109.47100 * 120.00240 * 2 1 3 5 5 C 1.36941 * 119.99986 * 285.40516 * 4 2 1 6 6 H 1.08002 * 119.99935 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00293 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99818 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47026 * 59.99781 * 9 7 5 11 11 H 1.48504 * 109.46824 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46993 * 299.99426 * 9 7 5 13 13 C 1.52998 * 109.47078 * 240.00359 * 2 1 3 14 14 H 1.08999 * 109.69988 * 287.93430 * 13 2 1 15 15 C 1.53190 * 109.58885 * 48.28404 * 13 2 1 16 16 C 1.53039 * 109.31671 * 174.42347 * 15 13 2 17 17 C 1.53045 * 109.53677 * 298.63899 * 16 15 13 18 18 C 1.52762 * 109.38281 * 61.23507 * 17 16 15 19 19 N 1.46919 * 109.00968 * 305.58954 * 18 17 16 20 20 C 1.34782 * 120.63265 * 233.58375 * 19 18 17 21 21 O 1.21676 * 120.00135 * 183.38210 * 20 19 18 22 22 C 1.46720 * 119.99366 * 3.38057 * 20 19 18 23 23 O 1.35342 * 126.64950 * 353.32460 * 22 20 19 24 24 C 1.33662 * 107.68455 * 180.26054 * 23 22 20 25 25 N 1.30617 * 109.15452 * 359.74906 * 24 23 22 26 26 C 1.33691 * 108.99637 * 0.02562 * 25 24 23 27 27 C 1.50696 * 126.26910 * 179.97438 * 26 25 24 28 28 F 1.39905 * 109.46688 * 240.01969 * 27 26 25 29 29 F 1.39906 * 109.47118 * 120.02557 * 27 26 25 30 30 H 1.09003 * 109.46988 * 300.00159 * 1 2 3 31 31 H 1.09006 * 109.47103 * 59.99232 * 1 2 3 32 32 H 1.08994 * 109.47487 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00383 * 105.40194 * 4 2 1 34 34 H 0.96996 * 120.00024 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.50132 * 294.37772 * 15 13 2 36 36 H 1.09004 * 109.49887 * 54.43711 * 15 13 2 37 37 H 1.09008 * 109.45852 * 58.65578 * 16 15 13 38 38 H 1.08996 * 109.46210 * 178.61392 * 16 15 13 39 39 H 1.09003 * 109.49470 * 181.31201 * 17 16 15 40 40 H 1.08997 * 109.49402 * 301.38031 * 17 16 15 41 41 H 1.09002 * 109.51115 * 185.70432 * 18 17 16 42 42 H 1.08998 * 109.43204 * 65.42597 * 18 17 16 43 43 H 1.08010 * 125.42168 * 179.79199 * 24 23 22 44 44 H 1.08991 * 109.47794 * 0.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.9495 -0.0758 2.4178 6 1 1.5357 0.9184 2.4994 7 6 2.4127 -0.7300 3.5510 8 7 2.9176 -1.9414 3.4515 9 14 2.3195 0.1090 5.2175 10 1 0.9030 0.4201 5.5365 11 1 2.8741 -0.7939 6.2579 12 1 3.1070 1.3674 5.1828 13 6 2.0400 -0.7212 -1.2493 14 1 1.8646 -1.7926 -1.1524 15 6 1.3057 -0.1903 -2.4845 16 6 1.9156 -0.8129 -3.7424 17 6 3.3894 -0.4141 -3.8480 18 6 4.1461 -0.9426 -2.6308 19 7 3.4787 -0.4702 -1.4101 20 6 4.1718 0.1860 -0.4585 21 8 3.6218 0.5180 0.5748 22 6 5.5896 0.4998 -0.6687 23 8 6.3635 0.0894 -1.7003 24 6 7.5891 0.5883 -1.5121 25 7 7.6009 1.2923 -0.4119 26 6 6.3819 1.2635 0.1362 27 6 5.9621 1.9455 1.4128 28 9 5.5103 0.9872 2.3265 29 9 4.9320 2.8521 1.1403 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.3903 -1.5834 1.1228 34 1 3.2409 -2.3987 4.2435 35 1 0.2503 -0.4555 -2.4223 36 1 1.4062 0.8942 -2.5293 37 1 1.8364 -1.8986 -3.6852 38 1 1.3788 -0.4557 -4.6213 39 1 3.8170 -0.8387 -4.7563 40 1 3.4707 0.6724 -3.8809 41 1 5.1720 -0.5749 -2.6520 42 1 4.1459 -2.0325 -2.6488 43 1 8.4349 0.4345 -2.1660 44 1 6.8128 2.4789 1.8366 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316877462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:19 Heat of formation + Delta-G solvation = -63.198963 kcal Electronic energy + Delta-G solvation = -33432.030692 eV Core-core repulsion = 28830.836826 eV Total energy + Delta-G solvation = -4601.193865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.90210 -47.93926 -44.63801 -41.44125 -38.37395 -36.98654 -36.36098 -34.20781 -33.70822 -32.03948 -31.51291 -29.40043 -28.34944 -26.47421 -25.89630 -24.43143 -24.33770 -23.26893 -21.90612 -21.38265 -20.80313 -19.19882 -18.74351 -18.43005 -18.20541 -17.91441 -17.65526 -16.98881 -16.81208 -16.67965 -15.87395 -15.59348 -15.49007 -15.33196 -14.93031 -14.82681 -14.68316 -14.58384 -14.28293 -14.19530 -13.87840 -13.77314 -13.62886 -13.48931 -12.97296 -12.76169 -12.73429 -12.60691 -12.52562 -12.35925 -12.15001 -12.03150 -11.80238 -11.70794 -11.56065 -11.31567 -11.20624 -10.77553 -10.36776 -10.16328 -9.48169 -8.55028 -7.73504 -4.89759 -0.34883 1.21076 1.23629 1.42458 1.47684 1.51576 2.05328 2.16729 2.38454 2.68504 3.11656 3.28637 3.38373 3.62030 3.79173 3.84249 3.96279 3.97423 4.02912 4.11943 4.14074 4.29015 4.31034 4.35763 4.42401 4.59759 4.71918 4.76134 4.86916 4.94014 5.03234 5.09043 5.10544 5.17605 5.22177 5.31009 5.42068 5.49473 5.54114 5.66443 5.85409 6.22966 6.47156 6.47487 7.27488 7.55673 8.30571 8.53618 9.51511 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.006831 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.234960 B = 4097.950157 C = 6228.615503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.176 3.824 3 H 0.035 0.965 4 N -0.693 5.693 5 C -0.163 4.163 6 H 0.051 0.949 7 C -0.078 4.078 8 N -0.974 5.974 9 Si 0.943 3.057 10 H -0.282 1.282 11 H -0.299 1.299 12 H -0.294 1.294 13 C 0.153 3.847 14 H 0.064 0.936 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.124 4.124 18 C 0.087 3.913 19 N -0.601 5.601 20 C 0.536 3.464 21 O -0.434 6.434 22 C -0.047 4.047 23 O -0.172 6.172 24 C 0.216 3.784 25 N -0.496 5.496 26 C -0.041 4.041 27 C 0.347 3.653 28 F -0.197 7.197 29 F -0.201 7.201 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.363 0.637 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.320 0.680 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 3.924 -22.126 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 H 0.053 0.947 4 N -0.332 5.332 5 C -0.296 4.296 6 H 0.069 0.931 7 C -0.269 4.269 8 N -0.629 5.629 9 Si 0.776 3.224 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.221 1.221 13 C 0.050 3.950 14 H 0.082 0.918 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.162 4.162 18 C -0.034 4.034 19 N -0.337 5.337 20 C 0.319 3.681 21 O -0.303 6.303 22 C -0.105 4.105 23 O -0.060 6.060 24 C -0.008 4.008 25 N -0.223 5.223 26 C -0.164 4.164 27 C 0.293 3.707 28 F -0.178 7.178 29 F -0.182 7.182 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.195 0.805 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.335 0.665 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.463 4.556 -21.185 22.919 hybrid contribution -0.239 -0.341 1.425 1.485 sum 7.224 4.215 -19.760 21.457 Atomic orbital electron populations 1.22396 0.97485 1.01026 1.00720 1.20560 0.91947 0.95489 0.85266 0.94748 1.42334 1.71999 1.16307 1.02521 1.19021 1.28100 0.96855 0.85610 0.93096 1.25023 1.04319 0.97665 0.99863 1.69758 1.51334 1.14205 1.27605 0.85605 0.77319 0.77266 0.82183 1.20891 1.22576 1.22145 1.21500 0.78590 0.99062 0.95841 0.91798 1.22001 1.00243 1.00655 0.93085 1.21540 0.95475 1.01059 0.97183 1.21809 0.95858 1.01227 0.97340 1.22354 0.97980 0.99803 0.83272 1.47843 1.09331 1.56700 1.19810 1.17311 0.82802 0.83027 0.84995 1.91507 1.65066 1.48838 1.24874 1.23612 0.94328 1.02595 0.89959 1.84714 1.21803 1.58985 1.40452 1.29823 0.87383 0.89267 0.94352 1.70116 1.19969 1.22173 1.10016 1.22262 0.91376 1.03154 0.99630 1.19649 0.87245 0.80194 0.83651 1.93156 1.91013 1.66104 1.67498 1.92993 1.63481 1.67317 1.94433 0.95130 0.90475 0.93393 0.80511 0.95262 0.89017 0.92009 0.91218 0.89457 0.87871 0.92253 0.87578 0.90879 0.66531 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 8.66 71.98 0.62 -5.06 16 2 C 0.18 7.31 1.82 44.99 0.08 7.40 16 3 H 0.03 1.64 6.37 -2.39 -0.02 1.62 16 4 N -0.69 -36.82 3.22 -322.95 -1.04 -37.86 16 5 C -0.16 -9.81 8.23 84.03 0.69 -9.12 16 6 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 7 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 8 N -0.97 -64.28 13.06 21.65 0.28 -64.00 16 9 Si 0.94 51.86 29.55 68.60 2.03 53.89 16 10 H -0.28 -14.80 7.11 99.48 0.71 -14.10 16 11 H -0.30 -16.44 7.11 99.48 0.71 -15.74 16 12 H -0.29 -16.20 7.11 99.48 0.71 -15.49 16 13 C 0.15 4.92 2.61 44.97 0.12 5.04 16 14 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 15 C -0.12 -2.73 4.43 30.67 0.14 -2.60 16 16 C -0.12 -1.85 5.89 30.62 0.18 -1.67 16 17 C -0.12 -1.95 6.06 30.53 0.19 -1.76 16 18 C 0.09 1.90 6.29 86.22 0.54 2.44 16 19 N -0.60 -19.23 2.98 -800.51 -2.38 -21.61 16 20 C 0.54 21.37 7.41 86.46 0.64 22.01 16 21 O -0.43 -21.40 6.87 -4.27 -0.03 -21.43 16 22 C -0.05 -1.60 6.88 24.05 0.17 -1.44 16 23 O -0.17 -3.94 7.27 -7.05 -0.05 -3.99 16 24 C 0.22 3.64 13.21 130.42 1.72 5.36 16 25 N -0.50 -13.06 11.26 -303.13 -3.41 -16.48 16 26 C -0.04 -1.42 6.59 41.83 0.28 -1.14 16 27 C 0.35 13.15 5.11 71.23 0.36 13.51 16 28 F -0.20 -9.70 15.97 44.97 0.72 -8.99 16 29 F -0.20 -8.35 16.46 44.97 0.74 -7.61 16 30 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 31 H 0.08 2.18 6.44 -2.38 -0.02 2.16 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.36 21.04 7.70 -92.71 -0.71 20.32 16 34 H 0.24 15.57 8.31 -92.71 -0.77 14.79 16 35 H 0.09 1.85 6.70 -2.38 -0.02 1.84 16 36 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 2.19 3.80 -51.26 -0.19 1.99 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.32 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.16 4.50 8.14 -2.39 -0.02 4.48 16 Total: -1.00 -85.22 353.12 3.20 -82.02 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.16 Total: 17.55 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 6.19 Total: 28.50 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -6.55 Total: -139.95 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.08 Total: -25.42 kcal Atomic # 9 Polarization: -18.06 SS G_CDS: 1.46 Total: -16.60 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.03 Total: 53.89 kcal Total: -85.22 3.20 -82.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.824 kcal (2) G-P(sol) polarization free energy of solvation -85.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds