Wall clock time and date at job start Wed Apr 1 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47143 * 2 1 4 4 N 1.46508 * 109.47263 * 239.99779 * 2 1 3 5 5 C 1.36926 * 119.99832 * 70.76717 * 4 2 1 6 6 H 1.08002 * 120.00428 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00090 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99725 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46757 * 90.00254 * 9 7 5 11 11 H 1.48501 * 109.46763 * 209.99806 * 9 7 5 12 12 H 1.48497 * 109.47245 * 330.00075 * 9 7 5 13 13 C 1.53005 * 109.46942 * 119.99837 * 2 1 3 14 14 H 1.09000 * 109.58505 * 67.88478 * 13 2 1 15 15 C 1.53187 * 109.70103 * 307.52463 * 13 2 1 16 16 C 1.53044 * 109.30856 * 185.50744 * 15 13 2 17 17 C 1.53038 * 109.53870 * 61.36605 * 16 15 13 18 18 C 1.53622 * 109.24403 * 298.51007 * 17 16 15 19 19 N 1.46922 * 109.58621 * 188.16569 * 13 2 1 20 20 C 1.34781 * 120.63351 * 353.51058 * 19 13 2 21 21 O 1.21686 * 119.99819 * 6.91044 * 20 19 13 22 22 C 1.46717 * 120.00290 * 186.90142 * 20 19 13 23 23 O 1.35351 * 126.64282 * 7.98454 * 22 20 19 24 24 C 1.33669 * 107.68158 * 180.15953 * 23 22 20 25 25 N 1.30621 * 109.15260 * 359.56795 * 24 23 22 26 26 C 1.33686 * 108.99867 * 0.26984 * 25 24 23 27 27 C 1.50698 * 126.27276 * 179.97438 * 26 25 24 28 28 F 1.39901 * 109.47289 * 119.97677 * 27 26 25 29 29 F 1.39902 * 109.47133 * 239.97394 * 27 26 25 30 30 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47546 * 300.00155 * 1 2 3 32 32 H 1.09003 * 109.46991 * 60.00164 * 1 2 3 33 33 H 0.96997 * 119.99545 * 250.76384 * 4 2 1 34 34 H 0.96999 * 120.00373 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.50070 * 305.45588 * 15 13 2 36 36 H 1.09000 * 109.49538 * 65.52913 * 15 13 2 37 37 H 1.09001 * 109.45673 * 181.38885 * 16 15 13 38 38 H 1.09004 * 109.46164 * 301.35468 * 16 15 13 39 39 H 1.08999 * 109.49516 * 58.58653 * 17 16 15 40 40 H 1.09003 * 109.49468 * 178.64602 * 17 16 15 41 41 H 1.09005 * 109.73810 * 295.12146 * 18 17 16 42 42 H 1.09001 * 109.66430 * 174.54861 * 18 17 16 43 43 H 1.07994 * 125.42266 * 179.83882 * 24 23 22 44 44 H 1.08995 * 109.47166 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.8783 -0.1089 -2.4278 6 1 1.4074 0.8589 -2.5175 7 6 2.3406 -0.7635 -3.5613 8 7 2.9139 -1.9432 -3.4521 9 14 2.1488 0.0298 -5.2416 10 1 3.3445 0.8597 -5.5364 11 1 2.0130 -1.0274 -6.2755 12 1 0.9368 0.8878 -5.2485 13 6 2.0399 -0.7212 1.2493 14 1 1.7972 -1.7818 1.1836 15 6 1.3838 -0.1205 2.4964 16 6 2.0002 -0.7523 3.7467 17 6 3.4981 -0.4417 3.7917 18 6 4.1789 -1.0511 2.5568 19 7 3.4959 -0.5548 1.3543 20 6 4.1927 0.0367 0.3637 21 8 3.6057 0.5506 -0.5701 22 6 5.6589 0.0611 0.4114 23 8 6.4493 -0.5910 1.2957 24 6 7.7193 -0.3009 0.9959 25 7 7.7441 0.4940 -0.0403 26 6 6.4893 0.7404 -0.4300 27 6 6.0695 1.6101 -1.5869 28 9 5.3449 0.8446 -2.5069 29 9 5.2682 2.6563 -1.1172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.4409 -1.5600 -1.1156 34 1 3.2366 -2.4009 -4.2441 35 1 1.5514 0.9564 2.5127 36 1 0.3128 -0.3219 2.4768 37 1 1.5178 -0.3445 4.6350 38 1 1.8541 -1.8321 3.7175 39 1 3.6456 0.6382 3.7958 40 1 3.9317 -0.8716 4.6947 41 1 4.1069 -2.1380 2.5955 42 1 5.2270 -0.7528 2.5311 43 1 8.5867 -0.6690 1.5233 44 1 6.9546 2.0203 -2.0730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316877492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:23 Heat of formation + Delta-G solvation = -39.979522 kcal Electronic energy + Delta-G solvation = -33477.446572 eV Core-core repulsion = 28877.259577 eV Total energy + Delta-G solvation = -4600.186995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.28360 -46.25840 -43.40265 -40.08426 -37.04109 -35.37966 -35.06327 -32.63916 -32.25613 -30.72667 -29.91339 -27.83918 -26.91775 -25.07994 -24.31892 -23.28532 -22.87995 -21.87034 -20.68194 -20.00688 -19.51624 -17.71592 -17.06469 -17.00008 -16.71326 -16.46583 -16.20778 -15.62722 -15.44180 -14.92636 -14.62534 -14.34687 -14.10183 -13.71789 -13.61327 -13.32947 -13.15717 -13.09076 -12.94939 -12.61401 -12.45232 -12.20755 -12.12116 -12.02281 -11.52090 -11.38785 -11.24512 -11.07025 -10.88055 -10.81063 -10.66307 -10.64112 -10.56232 -10.32609 -10.17311 -9.75518 -9.45656 -9.06707 -8.72756 -8.57068 -8.10511 -6.54976 -5.53857 -2.69894 0.92471 2.38521 2.47858 3.32722 3.57840 3.62429 3.64123 3.64453 3.66117 4.39623 4.57659 4.69248 4.76568 4.82834 4.92094 4.96207 5.12877 5.20929 5.40615 5.44233 5.53365 5.56766 5.64270 5.67048 5.77114 5.80806 5.85092 5.87458 5.97528 6.05044 6.09271 6.11684 6.18228 6.33832 6.42416 6.44913 6.73384 6.87120 7.02613 7.33248 7.45060 7.80518 7.93999 8.61634 8.70917 9.74841 10.27666 10.62597 11.69507 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.006939 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.365937 B = 4034.070656 C = 6128.004731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.173 3.827 3 H 0.065 0.935 4 N -0.682 5.682 5 C -0.190 4.190 6 H 0.066 0.934 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.897 3.103 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.151 3.849 14 H 0.069 0.931 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.101 3.899 19 N -0.607 5.607 20 C 0.540 3.460 21 O -0.383 6.383 22 C -0.017 4.017 23 O -0.186 6.186 24 C 0.170 3.830 25 N -0.469 5.469 26 C -0.041 4.041 27 C 0.359 3.641 28 F -0.158 7.158 29 F -0.191 7.191 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.254 0.746 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.262 2.543 17.043 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 H 0.083 0.917 4 N -0.322 5.322 5 C -0.321 4.321 6 H 0.084 0.916 7 C -0.209 4.209 8 N -0.584 5.584 9 Si 0.730 3.270 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.212 1.212 13 C 0.048 3.952 14 H 0.087 0.913 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.170 4.170 18 C -0.022 4.022 19 N -0.345 5.345 20 C 0.322 3.678 21 O -0.249 6.249 22 C -0.075 4.075 23 O -0.073 6.073 24 C -0.056 4.056 25 N -0.197 5.197 26 C -0.165 4.165 27 C 0.304 3.696 28 F -0.139 7.139 29 F -0.172 7.172 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.212 0.788 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.269 0.731 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.357 3.173 16.050 17.552 hybrid contribution -0.138 -0.456 -0.491 0.685 sum 6.218 2.717 15.559 16.974 Atomic orbital electron populations 1.22521 0.99200 1.00779 1.00202 1.20589 0.90975 0.97143 0.84895 0.91718 1.42451 1.68163 1.20176 1.01425 1.19019 1.29290 1.00242 0.83572 0.91619 1.24532 1.02027 0.97078 0.97275 1.69633 1.46141 1.14778 1.27819 0.86306 0.77574 0.78022 0.85122 1.21841 1.22345 1.21159 1.21521 0.77756 0.99896 0.95993 0.91271 1.22016 1.00125 1.00765 0.93813 1.21524 0.95205 1.00924 0.97977 1.21978 0.96212 1.01378 0.97453 1.22047 0.97251 0.98611 0.84295 1.47567 1.07547 1.60908 1.18464 1.16625 0.81688 0.85221 0.84237 1.91366 1.63782 1.38585 1.31141 1.23947 0.93735 0.97859 0.91912 1.84705 1.18227 1.56836 1.47534 1.28168 0.86258 0.96275 0.94858 1.70042 1.22248 1.15570 1.11827 1.22288 0.88823 1.04375 1.00985 1.19066 0.88337 0.79110 0.83052 1.93266 1.79633 1.75735 1.65220 1.93018 1.76823 1.57830 1.89522 0.93623 0.94277 0.92450 0.78844 0.94076 0.91468 0.90362 0.91983 0.91875 0.91689 0.91217 0.91753 0.88805 0.73069 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.75 37.16 0.33 -2.69 16 2 C 0.17 3.50 1.80 -67.93 -0.12 3.37 16 3 H 0.07 1.46 6.36 -51.93 -0.33 1.12 16 4 N -0.68 -17.13 3.07 -53.42 -0.16 -17.30 16 5 C -0.19 -5.37 8.32 -15.06 -0.13 -5.50 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 9 Si 0.90 23.86 29.55 -169.99 -5.02 18.83 16 10 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 11 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 C 0.15 2.47 2.55 -67.60 -0.17 2.29 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.13 -1.61 4.60 -26.61 -0.12 -1.74 16 16 C -0.12 -1.20 5.88 -26.69 -0.16 -1.36 16 17 C -0.13 -1.33 6.10 -26.39 -0.16 -1.49 16 18 C 0.10 1.26 6.16 -3.49 -0.02 1.24 16 19 N -0.61 -9.98 2.97 -166.47 -0.49 -10.47 16 20 C 0.54 10.69 7.28 -12.83 -0.09 10.59 16 21 O -0.38 -8.98 7.11 5.20 0.04 -8.94 16 22 C -0.02 -0.30 6.79 -36.84 -0.25 -0.55 16 23 O -0.19 -2.57 7.45 4.39 0.03 -2.54 16 24 C 0.17 1.95 13.21 52.25 0.69 2.64 16 25 N -0.47 -7.14 11.26 -10.89 -0.12 -7.26 16 26 C -0.04 -0.73 6.59 -82.47 -0.54 -1.27 16 27 C 0.36 6.78 5.11 36.00 0.18 6.97 16 28 F -0.16 -3.79 15.97 2.25 0.04 -3.75 16 29 F -0.19 -3.78 16.47 2.25 0.04 -3.74 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.58 6.47 -51.93 -0.34 0.24 16 32 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 33 H 0.38 10.32 7.63 -40.82 -0.31 10.01 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.91 6.70 -51.93 -0.35 0.56 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.15 4.24 -52.80 -0.22 0.92 16 43 H 0.25 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -34.79 353.66 -6.01 -40.80 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.73 Total: 5.30 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -0.67 Total: 11.97 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.06 Total: -63.26 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.48 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.02 Total: 18.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.79 -6.01 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.820 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds