Wall clock time and date at job start Wed Apr 1 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47143 * 2 1 4 4 N 1.46508 * 109.47263 * 239.99779 * 2 1 3 5 5 C 1.36926 * 119.99832 * 70.76717 * 4 2 1 6 6 H 1.08002 * 120.00428 * 359.97438 * 5 4 2 7 7 C 1.38819 * 120.00090 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99725 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46757 * 90.00254 * 9 7 5 11 11 H 1.48501 * 109.46763 * 209.99806 * 9 7 5 12 12 H 1.48497 * 109.47245 * 330.00075 * 9 7 5 13 13 C 1.53005 * 109.46942 * 119.99837 * 2 1 3 14 14 H 1.09000 * 109.58505 * 67.88478 * 13 2 1 15 15 C 1.53187 * 109.70103 * 307.52463 * 13 2 1 16 16 C 1.53044 * 109.30856 * 185.50744 * 15 13 2 17 17 C 1.53038 * 109.53870 * 61.36605 * 16 15 13 18 18 C 1.53622 * 109.24403 * 298.51007 * 17 16 15 19 19 N 1.46922 * 109.58621 * 188.16569 * 13 2 1 20 20 C 1.34781 * 120.63351 * 353.51058 * 19 13 2 21 21 O 1.21686 * 119.99819 * 6.91044 * 20 19 13 22 22 C 1.46717 * 120.00290 * 186.90142 * 20 19 13 23 23 O 1.35351 * 126.64282 * 7.98454 * 22 20 19 24 24 C 1.33669 * 107.68158 * 180.15953 * 23 22 20 25 25 N 1.30621 * 109.15260 * 359.56795 * 24 23 22 26 26 C 1.33686 * 108.99867 * 0.26984 * 25 24 23 27 27 C 1.50698 * 126.27276 * 179.97438 * 26 25 24 28 28 F 1.39901 * 109.47289 * 119.97677 * 27 26 25 29 29 F 1.39902 * 109.47133 * 239.97394 * 27 26 25 30 30 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47546 * 300.00155 * 1 2 3 32 32 H 1.09003 * 109.46991 * 60.00164 * 1 2 3 33 33 H 0.96997 * 119.99545 * 250.76384 * 4 2 1 34 34 H 0.96999 * 120.00373 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.50070 * 305.45588 * 15 13 2 36 36 H 1.09000 * 109.49538 * 65.52913 * 15 13 2 37 37 H 1.09001 * 109.45673 * 181.38885 * 16 15 13 38 38 H 1.09004 * 109.46164 * 301.35468 * 16 15 13 39 39 H 1.08999 * 109.49516 * 58.58653 * 17 16 15 40 40 H 1.09003 * 109.49468 * 178.64602 * 17 16 15 41 41 H 1.09005 * 109.73810 * 295.12146 * 18 17 16 42 42 H 1.09001 * 109.66430 * 174.54861 * 18 17 16 43 43 H 1.07994 * 125.42266 * 179.83882 * 24 23 22 44 44 H 1.08995 * 109.47166 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.8783 -0.1089 -2.4278 6 1 1.4074 0.8589 -2.5175 7 6 2.3406 -0.7635 -3.5613 8 7 2.9139 -1.9432 -3.4521 9 14 2.1488 0.0298 -5.2416 10 1 3.3445 0.8597 -5.5364 11 1 2.0130 -1.0274 -6.2755 12 1 0.9368 0.8878 -5.2485 13 6 2.0399 -0.7212 1.2493 14 1 1.7972 -1.7818 1.1836 15 6 1.3838 -0.1205 2.4964 16 6 2.0002 -0.7523 3.7467 17 6 3.4981 -0.4417 3.7917 18 6 4.1789 -1.0511 2.5568 19 7 3.4959 -0.5548 1.3543 20 6 4.1927 0.0367 0.3637 21 8 3.6057 0.5506 -0.5701 22 6 5.6589 0.0611 0.4114 23 8 6.4493 -0.5910 1.2957 24 6 7.7193 -0.3009 0.9959 25 7 7.7441 0.4940 -0.0403 26 6 6.4893 0.7404 -0.4300 27 6 6.0695 1.6101 -1.5869 28 9 5.3449 0.8446 -2.5069 29 9 5.2682 2.6563 -1.1172 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.4409 -1.5600 -1.1156 34 1 3.2366 -2.4009 -4.2441 35 1 1.5514 0.9564 2.5127 36 1 0.3128 -0.3219 2.4768 37 1 1.5178 -0.3445 4.6350 38 1 1.8541 -1.8321 3.7175 39 1 3.6456 0.6382 3.7958 40 1 3.9317 -0.8716 4.6947 41 1 4.1069 -2.1380 2.5955 42 1 5.2270 -0.7528 2.5311 43 1 8.5867 -0.6690 1.5233 44 1 6.9546 2.0203 -2.0730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316877492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:22 Heat of formation + Delta-G solvation = -66.370327 kcal Electronic energy + Delta-G solvation = -33478.590963 eV Core-core repulsion = 28877.259577 eV Total energy + Delta-G solvation = -4601.331386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.88516 -47.91311 -44.61608 -41.44520 -38.33852 -36.95638 -36.34281 -34.20383 -33.71026 -32.02368 -31.49013 -29.40328 -28.32851 -26.46573 -25.90819 -24.44380 -24.29503 -23.21851 -21.90153 -21.39693 -20.81136 -19.18067 -18.73904 -18.42679 -18.18682 -17.87982 -17.65877 -16.97358 -16.75864 -16.66211 -15.86968 -15.61933 -15.53981 -15.28804 -14.90182 -14.80927 -14.71457 -14.57115 -14.25866 -14.22984 -13.86259 -13.75382 -13.56589 -13.51631 -13.00534 -12.80527 -12.72741 -12.60537 -12.48870 -12.34597 -12.13083 -12.00860 -11.82382 -11.71381 -11.57899 -11.32132 -11.23008 -10.82757 -10.32440 -10.13107 -9.50154 -8.55164 -7.74953 -4.91429 -0.33280 1.23379 1.24702 1.42065 1.47844 1.51114 2.06316 2.18651 2.40389 2.67512 3.11966 3.29887 3.40951 3.61943 3.79607 3.83123 3.97416 3.98984 4.05041 4.11628 4.15963 4.30098 4.32031 4.35657 4.41989 4.59812 4.72207 4.77274 4.87887 4.93788 5.03048 5.09306 5.10575 5.16512 5.20369 5.28242 5.43592 5.48549 5.55608 5.66370 5.86055 6.23925 6.45781 6.48021 7.26761 7.54076 8.28231 8.51321 9.49850 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009418 B = 0.006939 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.365937 B = 4034.070656 C = 6128.004731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 H 0.039 0.961 4 N -0.695 5.695 5 C -0.169 4.169 6 H 0.053 0.947 7 C -0.074 4.074 8 N -0.971 5.971 9 Si 0.942 3.058 10 H -0.301 1.301 11 H -0.298 1.298 12 H -0.276 1.276 13 C 0.154 3.846 14 H 0.066 0.934 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.124 4.124 18 C 0.093 3.907 19 N -0.603 5.603 20 C 0.541 3.459 21 O -0.437 6.437 22 C -0.046 4.046 23 O -0.175 6.175 24 C 0.216 3.784 25 N -0.496 5.496 26 C -0.043 4.043 27 C 0.347 3.653 28 F -0.193 7.193 29 F -0.200 7.200 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.363 0.637 34 H 0.238 0.762 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.320 0.680 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 2.268 21.091 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.056 0.944 4 N -0.334 5.334 5 C -0.302 4.302 6 H 0.071 0.929 7 C -0.264 4.264 8 N -0.625 5.625 9 Si 0.775 3.225 10 H -0.230 1.230 11 H -0.225 1.225 12 H -0.201 1.201 13 C 0.051 3.949 14 H 0.084 0.916 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.163 4.163 18 C -0.028 4.028 19 N -0.340 5.340 20 C 0.324 3.676 21 O -0.306 6.306 22 C -0.104 4.104 23 O -0.062 6.062 24 C -0.009 4.009 25 N -0.223 5.223 26 C -0.166 4.166 27 C 0.292 3.708 28 F -0.174 7.174 29 F -0.182 7.182 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.195 0.805 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.335 0.665 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.804 2.931 20.174 21.828 hybrid contribution -0.301 -0.292 -1.433 1.493 sum 7.502 2.639 18.741 20.359 Atomic orbital electron populations 1.22376 0.97569 1.00941 1.00718 1.20630 0.91914 0.95814 0.85104 0.94374 1.42385 1.69346 1.19771 1.01864 1.19068 1.26929 0.99046 0.85141 0.92940 1.25010 1.03720 0.97978 0.99706 1.69759 1.49187 1.16163 1.27396 0.85550 0.77271 0.77168 0.82513 1.22951 1.22548 1.20129 1.21488 0.78138 0.99318 0.95958 0.91644 1.21978 1.00743 1.00240 0.92997 1.21530 0.95111 1.01304 0.97229 1.21960 0.96127 1.00978 0.97188 1.22379 0.97532 0.99337 0.83560 1.47794 1.07733 1.59541 1.18895 1.17094 0.82750 0.83753 0.83980 1.91360 1.65093 1.41415 1.32739 1.23556 0.93475 0.99713 0.93647 1.84726 1.18892 1.56200 1.46348 1.29762 0.86588 0.92114 0.92400 1.70100 1.20575 1.17808 1.13846 1.22273 0.90237 1.03758 1.00294 1.19624 0.88609 0.79033 0.83505 1.93190 1.80706 1.76799 1.66739 1.92983 1.77360 1.58183 1.89639 0.93535 0.90502 0.95108 0.80550 0.95257 0.92124 0.89017 0.89494 0.91092 0.92343 0.87943 0.90720 0.88324 0.66545 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 8.75 71.98 0.63 -5.06 16 2 C 0.17 7.21 1.80 44.99 0.08 7.29 16 3 H 0.04 1.81 6.36 -2.39 -0.02 1.80 16 4 N -0.69 -36.69 3.07 -322.92 -0.99 -37.68 16 5 C -0.17 -10.10 8.32 84.04 0.70 -9.40 16 6 H 0.05 3.20 7.83 -2.91 -0.02 3.17 16 7 C -0.07 -4.58 5.50 84.86 0.47 -4.12 16 8 N -0.97 -63.40 13.06 21.65 0.28 -63.12 16 9 Si 0.94 51.47 29.55 68.60 2.03 53.49 16 10 H -0.30 -16.69 7.11 99.48 0.71 -15.99 16 11 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 12 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 13 C 0.15 4.93 2.55 44.98 0.11 5.04 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.12 -2.74 4.60 30.67 0.14 -2.60 16 16 C -0.11 -1.84 5.88 30.62 0.18 -1.66 16 17 C -0.12 -2.00 6.10 30.82 0.19 -1.81 16 18 C 0.09 2.06 6.16 86.51 0.53 2.59 16 19 N -0.60 -19.39 2.97 -798.82 -2.37 -21.76 16 20 C 0.54 21.79 7.28 86.46 0.63 22.41 16 21 O -0.44 -21.46 7.11 -4.30 -0.03 -21.49 16 22 C -0.05 -1.62 6.79 24.05 0.16 -1.46 16 23 O -0.17 -4.26 7.45 -7.21 -0.05 -4.31 16 24 C 0.22 3.94 13.21 130.42 1.72 5.67 16 25 N -0.50 -13.74 11.26 -303.12 -3.41 -17.15 16 26 C -0.04 -1.51 6.59 41.83 0.28 -1.24 16 27 C 0.35 13.40 5.11 71.24 0.36 13.76 16 28 F -0.19 -9.79 15.97 44.97 0.72 -9.07 16 29 F -0.20 -8.25 16.47 44.97 0.74 -7.51 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.17 6.47 -2.39 -0.02 2.16 16 32 H 0.03 1.25 7.92 -2.39 -0.02 1.23 16 33 H 0.36 20.88 7.63 -92.71 -0.71 20.17 16 34 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.84 6.70 -2.39 -0.02 1.83 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.10 2.08 4.24 -16.22 -0.07 2.01 16 43 H 0.32 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.15 4.59 8.14 -2.39 -0.02 4.57 16 Total: -1.00 -84.23 353.66 3.39 -80.84 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.29 Total: 18.32 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: 6.19 Total: 29.41 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -6.49 Total: -139.70 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.08 Total: -25.80 kcal Atomic # 9 Polarization: -18.03 SS G_CDS: 1.46 Total: -16.57 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.03 Total: 53.49 kcal Total: -84.23 3.39 -80.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.474 kcal (2) G-P(sol) polarization free energy of solvation -84.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds