Wall clock time and date at job start Wed Apr 1 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46811 * 2 1 4 4 N 1.46503 * 109.47141 * 120.00121 * 2 1 3 5 5 C 1.36933 * 119.99917 * 275.00076 * 4 2 1 6 6 H 1.08004 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00206 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00178 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99613 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47458 * 90.00313 * 9 7 5 11 11 H 1.48500 * 109.46698 * 209.99999 * 9 7 5 12 12 H 1.48507 * 109.46991 * 329.99481 * 9 7 5 13 13 C 1.52997 * 109.46820 * 239.99885 * 2 1 3 14 14 H 1.08998 * 109.70260 * 53.47156 * 13 2 1 15 15 C 1.52761 * 109.51212 * 293.35054 * 13 2 1 16 16 C 1.53045 * 109.38296 * 185.70728 * 15 13 2 17 17 C 1.53036 * 109.53725 * 61.23956 * 16 15 13 18 18 C 1.53186 * 109.31594 * 298.63448 * 17 16 15 19 19 N 1.46929 * 108.77594 * 54.63801 * 18 17 16 20 20 C 1.34768 * 120.63401 * 126.37240 * 19 18 17 21 21 O 1.21687 * 120.00130 * 186.19995 * 20 19 18 22 22 C 1.46721 * 120.00367 * 6.19635 * 20 19 18 23 23 O 1.35348 * 126.63798 * 354.03647 * 22 20 19 24 24 C 1.33668 * 107.68006 * 180.17838 * 23 22 20 25 25 N 1.30616 * 109.15514 * 359.61244 * 24 23 22 26 26 C 1.33689 * 108.99426 * 0.24319 * 25 24 23 27 27 C 1.50710 * 126.27061 * 180.02562 * 26 25 24 28 28 F 1.39900 * 109.47227 * 29.97281 * 27 26 25 29 29 F 1.39897 * 109.46787 * 149.97313 * 27 26 25 30 30 H 1.09006 * 109.47153 * 295.28024 * 1 2 3 31 31 H 1.09000 * 109.47416 * 55.27845 * 1 2 3 32 32 H 1.08995 * 109.46926 * 175.28071 * 1 2 3 33 33 H 0.96990 * 119.99964 * 94.99781 * 4 2 1 34 34 H 0.97003 * 119.99922 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.56212 * 65.67497 * 15 13 2 36 36 H 1.08995 * 109.35872 * 305.61867 * 15 13 2 37 37 H 1.09000 * 109.45964 * 301.22392 * 16 15 13 38 38 H 1.08996 * 109.45951 * 181.26107 * 16 15 13 39 39 H 1.09000 * 109.49509 * 178.67895 * 17 16 15 40 40 H 1.09002 * 109.49837 * 58.58945 * 17 16 15 41 41 H 1.08995 * 109.58929 * 294.84624 * 18 17 16 42 42 H 1.09006 * 109.70934 * 174.49153 * 18 17 16 43 43 H 1.08001 * 125.42040 * 179.87791 * 24 23 22 44 44 H 1.09001 * 109.46635 * 269.97240 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0405 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.7385 -0.0051 4.6426 9 14 3.0580 -2.4739 3.4247 10 1 4.4907 -2.6149 3.0609 11 1 2.8189 -3.1044 4.7478 12 1 2.2184 -3.1428 2.3986 13 6 2.0399 -0.7213 -1.2492 14 1 1.5865 -0.2822 -2.1379 15 6 1.6719 -2.2017 -1.1696 16 6 2.3044 -2.9465 -2.3475 17 6 3.8278 -2.8210 -2.2738 18 6 4.2198 -1.3432 -2.3695 19 7 3.5017 -0.5951 -1.3286 20 6 4.1715 0.1875 -0.4597 21 8 3.5815 0.7123 0.4662 22 6 5.6122 0.4069 -0.6299 23 8 6.4192 -0.1935 -1.5356 24 6 7.6557 0.2810 -1.3551 25 7 7.6424 1.1532 -0.3830 26 6 6.3965 1.2581 0.0905 27 6 5.9422 2.1538 1.2142 28 9 6.7454 3.2987 1.2518 29 9 4.6099 2.5255 1.0046 30 1 -0.3634 0.4389 0.9293 31 1 -0.3634 0.5853 -0.8446 32 1 -0.3633 -1.0241 -0.0845 33 1 2.2490 -1.6317 1.1526 34 1 3.0626 -0.4622 5.4345 35 1 0.5881 -2.3111 -1.2097 36 1 2.0456 -2.6171 -0.2337 37 1 1.9494 -2.5143 -3.2831 38 1 2.0242 -3.9989 -2.3044 39 1 4.2785 -3.3712 -3.0997 40 1 4.1812 -3.2306 -1.3275 41 1 3.9478 -0.9559 -3.3513 42 1 5.2943 -1.2375 -2.2199 43 1 8.5263 -0.0075 -1.9254 44 1 6.0259 1.6199 2.1608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316877499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:28 Heat of formation + Delta-G solvation = -33.333940 kcal Electronic energy + Delta-G solvation = -33485.258839 eV Core-core repulsion = 28885.360018 eV Total energy + Delta-G solvation = -4599.898821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.47943 -46.45444 -43.59519 -40.30245 -37.22804 -35.61699 -35.17971 -32.69945 -32.24214 -30.96213 -30.07150 -28.53638 -26.98028 -25.21215 -24.11023 -23.51849 -23.03723 -21.90828 -20.95855 -20.28165 -19.19665 -17.87067 -17.46572 -17.39202 -16.66072 -16.61673 -16.52415 -15.76966 -15.65889 -15.04834 -14.60288 -14.57927 -14.25434 -13.98628 -13.78136 -13.56039 -13.27912 -13.20855 -13.01538 -12.75979 -12.49817 -12.33960 -12.25833 -12.11562 -11.66443 -11.53639 -11.45412 -11.21296 -10.89238 -10.85779 -10.80838 -10.74883 -10.68039 -10.40303 -10.21098 -9.97560 -9.32965 -9.18906 -8.78943 -8.67174 -8.19390 -6.95943 -5.53527 -2.83374 0.76591 2.23870 2.29440 3.14094 3.39736 3.41739 3.43400 3.51116 3.51911 4.17224 4.43658 4.62946 4.74289 4.75393 4.85664 4.88917 5.02747 5.14598 5.24279 5.29995 5.31980 5.45309 5.46952 5.53360 5.60300 5.70207 5.75204 5.79062 5.89601 5.93625 6.02626 6.07544 6.13690 6.27110 6.33992 6.40058 6.60244 6.72942 6.95020 7.20838 7.30520 7.60941 8.25685 8.49752 8.65381 9.43622 10.15419 10.35913 11.66497 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.007086 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.880974 B = 3950.563816 C = 5516.696477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.091 0.909 4 N -0.732 5.732 5 C -0.181 4.181 6 H 0.092 0.908 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.869 3.131 10 H -0.294 1.294 11 H -0.295 1.295 12 H -0.283 1.283 13 C 0.146 3.854 14 H 0.073 0.927 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.134 4.134 18 C 0.096 3.904 19 N -0.604 5.604 20 C 0.560 3.440 21 O -0.386 6.386 22 C -0.039 4.039 23 O -0.183 6.183 24 C 0.178 3.822 25 N -0.465 5.465 26 C -0.021 4.021 27 C 0.357 3.643 28 F -0.197 7.197 29 F -0.159 7.159 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.354 0.646 34 H 0.253 0.747 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.256 0.744 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -3.539 -18.877 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.064 3.936 3 H 0.108 0.892 4 N -0.376 5.376 5 C -0.312 4.312 6 H 0.109 0.891 7 C -0.202 4.202 8 N -0.595 5.595 9 Si 0.702 3.298 10 H -0.221 1.221 11 H -0.222 1.222 12 H -0.210 1.210 13 C 0.043 3.957 14 H 0.090 0.910 15 C -0.174 4.174 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.027 4.027 19 N -0.340 5.340 20 C 0.342 3.658 21 O -0.253 6.253 22 C -0.095 4.095 23 O -0.070 6.070 24 C -0.048 4.048 25 N -0.193 5.193 26 C -0.144 4.144 27 C 0.303 3.697 28 F -0.178 7.178 29 F -0.140 7.140 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.188 0.812 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.081 -2.710 -17.982 19.174 hybrid contribution 0.218 -2.023 -0.405 2.074 sum 6.298 -4.732 -18.387 20.004 Atomic orbital electron populations 1.22542 0.99176 1.00312 1.00984 1.20703 0.90805 0.97876 0.84230 0.89165 1.42855 1.79157 1.08402 1.07154 1.18982 1.32623 0.95087 0.84490 0.89068 1.24523 1.03399 0.96180 0.96066 1.69671 1.54961 1.34683 1.00151 0.86776 0.77972 0.88733 0.76358 1.22116 1.22185 1.20950 1.21614 0.77925 0.96022 1.00132 0.90955 1.21968 1.01149 0.95355 0.98976 1.21524 0.94933 1.00431 0.98684 1.21904 0.96851 0.95997 1.02481 1.22111 0.98005 0.91488 0.91057 1.47726 1.07365 1.46510 1.32436 1.16823 0.82003 0.83138 0.83828 1.91407 1.62370 1.45231 1.26256 1.23888 0.93744 0.98878 0.93036 1.84706 1.19592 1.54680 1.48048 1.28399 0.87454 0.92565 0.96335 1.70177 1.20926 1.17738 1.10425 1.22521 0.89715 1.01276 1.00931 1.19351 0.73732 0.80844 0.95815 1.92987 1.73891 1.53440 1.97517 1.93188 1.32844 1.91858 1.96072 0.91837 0.94420 0.93850 0.81155 0.93694 0.90347 0.90995 0.91941 0.91922 0.91030 0.91557 0.91693 0.88211 0.72858 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.37 37.16 0.35 -2.53 16 2 C 0.17 3.25 1.88 -67.93 -0.13 3.13 16 3 H 0.09 1.91 5.92 -52.15 -0.31 1.60 16 4 N -0.73 -16.78 3.42 -53.42 -0.18 -16.96 16 5 C -0.18 -5.04 8.44 -15.06 -0.13 -5.16 16 6 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 7 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 8 N -0.94 -30.03 13.97 55.49 0.78 -29.25 16 9 Si 0.87 22.62 27.74 -169.99 -4.71 17.90 16 10 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 12 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 13 C 0.15 2.17 2.71 -67.82 -0.18 1.99 16 14 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.14 -1.86 4.86 -26.83 -0.13 -1.99 16 16 C -0.12 -1.25 5.89 -26.69 -0.16 -1.40 16 17 C -0.13 -1.40 6.08 -26.62 -0.16 -1.57 16 18 C 0.10 1.09 6.26 -3.71 -0.02 1.06 16 19 N -0.60 -9.08 2.98 -166.99 -0.50 -9.57 16 20 C 0.56 10.08 7.25 -12.84 -0.09 9.99 16 21 O -0.39 -8.33 6.03 5.20 0.03 -8.29 16 22 C -0.04 -0.63 6.85 -36.84 -0.25 -0.88 16 23 O -0.18 -2.25 7.28 4.40 0.03 -2.21 16 24 C 0.18 1.85 13.21 52.25 0.69 2.54 16 25 N -0.47 -6.87 11.21 -10.88 -0.12 -6.99 16 26 C -0.02 -0.35 6.78 -82.46 -0.56 -0.91 16 27 C 0.36 6.53 5.58 36.01 0.20 6.73 16 28 F -0.20 -3.54 17.29 2.25 0.04 -3.50 16 29 F -0.16 -3.31 13.66 2.25 0.03 -3.28 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.69 6.55 -51.93 -0.34 0.35 16 33 H 0.35 8.18 3.46 -40.82 -0.14 8.04 16 34 H 0.25 7.78 8.31 -40.82 -0.34 7.45 16 35 H 0.08 1.00 6.79 -51.93 -0.35 0.65 16 36 H 0.07 1.21 6.00 -51.93 -0.31 0.90 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.11 3.92 -54.55 -0.21 0.90 16 43 H 0.26 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.13 2.38 8.14 -51.93 -0.42 1.96 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -34.66 345.29 -5.56 -40.23 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.49 Total: 6.09 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.67 Total: 10.64 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.03 Total: -62.77 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.51 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.07 Total: -6.79 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.66 -5.56 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.894 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds