Wall clock time and date at job start Wed Apr 1 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99465 * 2 1 4 4 O 1.20825 * 120.00070 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99822 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46986 * 304.99984 * 5 3 2 7 7 O 1.42897 * 109.46962 * 185.00179 * 5 3 2 8 8 C 1.52995 * 109.47448 * 64.99640 * 5 3 2 9 9 C 1.53039 * 109.46180 * 180.02562 * 8 5 3 10 10 C 1.53194 * 109.30914 * 181.38853 * 9 8 5 11 11 N 1.46924 * 108.77629 * 305.35770 * 10 9 8 12 12 C 1.34778 * 120.63399 * 233.33703 * 11 10 9 13 13 O 1.21586 * 119.99774 * 174.77292 * 12 11 10 14 14 N 1.34775 * 119.99830 * 354.76949 * 12 11 10 15 15 C 1.46501 * 119.99898 * 184.97674 * 14 12 11 16 16 C 1.50694 * 109.47020 * 180.02562 * 15 14 12 17 17 O 1.21297 * 120.00208 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00204 * 180.02562 * 16 15 14 19 19 C 1.37090 * 120.00302 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99950 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00116 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00394 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99790 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47412 * 89.99503 * 23 21 19 25 25 H 1.48497 * 109.47099 * 209.99501 * 23 21 19 26 26 H 1.48497 * 109.47396 * 329.99344 * 23 21 19 27 27 C 1.46928 * 118.73662 * 53.61384 * 11 10 9 28 28 C 1.53042 * 109.46009 * 300.07162 * 8 5 3 29 29 H 1.09006 * 109.46687 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47207 * 300.00044 * 1 2 3 31 31 H 1.08995 * 109.47021 * 60.00995 * 1 2 3 32 32 H 0.96699 * 113.99756 * 299.99462 * 7 5 3 33 33 H 1.09001 * 109.44871 * 60.03103 * 8 5 3 34 34 H 1.08990 * 109.49851 * 61.43420 * 9 8 5 35 35 H 1.08999 * 109.49332 * 301.33409 * 9 8 5 36 36 H 1.09004 * 109.58232 * 185.57801 * 10 9 8 37 37 H 1.08997 * 109.58954 * 65.15474 * 10 9 8 38 38 H 0.97001 * 120.00047 * 4.98290 * 14 12 11 39 39 H 1.08999 * 109.47004 * 300.00483 * 15 14 12 40 40 H 1.08999 * 109.46827 * 60.00446 * 15 14 12 41 41 H 0.97003 * 119.99383 * 0.02562 * 18 16 15 42 42 H 0.96992 * 120.00190 * 180.02562 * 22 21 19 43 43 H 1.09008 * 109.58549 * 66.17897 * 27 11 10 44 44 H 1.08993 * 109.58912 * 186.59763 * 27 11 10 45 45 H 1.09002 * 109.49571 * 298.56174 * 28 8 5 46 46 H 1.09002 * 109.50118 * 58.66059 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9596 0.7056 0.8427 7 8 3.9715 2.6403 0.1179 8 6 4.1081 0.6926 -1.3063 9 6 5.6364 0.7724 -1.3052 10 6 6.1735 0.2204 -2.6294 11 7 5.6402 -1.1342 -2.8281 12 6 6.4679 -2.1687 -3.0753 13 8 6.0248 -3.2989 -3.1436 14 7 7.7867 -1.9504 -3.2469 15 6 8.6696 -3.0574 -3.6231 16 6 10.0834 -2.5515 -3.7497 17 8 10.3295 -1.3815 -3.5453 18 7 11.0745 -3.3991 -4.0900 19 6 12.3606 -2.9388 -4.2057 20 1 12.5798 -1.8971 -4.0238 21 6 13.3825 -3.8128 -4.5561 22 7 14.6155 -3.3718 -4.6665 23 14 13.0036 -5.6148 -4.8700 24 1 12.6808 -5.8098 -6.3063 25 1 14.1859 -6.4389 -4.5121 26 1 11.8429 -6.0283 -4.0413 27 6 4.1868 -1.3384 -2.7584 28 6 3.6724 -0.7690 -1.4325 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 3.6564 3.2071 -0.5993 33 1 3.7150 1.2626 -2.1482 34 1 6.0309 0.1821 -0.4782 35 1 5.9463 1.8112 -1.1917 36 1 7.2623 0.1829 -2.5948 37 1 5.8538 0.8630 -3.4497 38 1 8.1514 -1.0604 -3.1213 39 1 8.6282 -3.8315 -2.8569 40 1 8.3451 -3.4727 -4.5771 41 1 10.8776 -4.3347 -4.2538 42 1 15.3287 -3.9818 -4.9114 43 1 3.7051 -0.8229 -3.5893 44 1 3.9648 -2.4043 -2.8090 45 1 4.0858 -1.3446 -0.6042 46 1 2.5842 -0.8276 -1.4096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323174394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:08 Heat of formation + Delta-G solvation = -217.387438 kcal Electronic energy + Delta-G solvation = -30279.672457 eV Core-core repulsion = 25782.879993 eV Total energy + Delta-G solvation = -4496.792464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00560 -41.42585 -40.29570 -39.15503 -37.99026 -36.97655 -36.29373 -35.41521 -34.10762 -33.79582 -32.03465 -30.23620 -29.11292 -27.86641 -26.25403 -25.09132 -24.08876 -22.36971 -21.85190 -21.45247 -20.81104 -20.44543 -19.44684 -19.03995 -18.42215 -17.68332 -17.50443 -17.15941 -16.96912 -16.88788 -16.71318 -15.99136 -15.94225 -15.57850 -15.24815 -15.06883 -14.94438 -14.75159 -14.60187 -14.31779 -14.19058 -14.03134 -13.88385 -13.59116 -13.46231 -13.23941 -13.01290 -12.94677 -12.80490 -12.43409 -12.24509 -12.00060 -11.98698 -11.78827 -11.61350 -11.56820 -11.44899 -11.22924 -10.99347 -10.63763 -10.33463 -10.25374 -9.50242 -8.44293 -6.06082 0.99367 1.32406 1.35134 1.44698 1.55585 1.62671 1.79968 2.10362 2.21615 2.70794 3.02534 3.10715 3.12110 3.43408 3.66171 3.76902 3.88417 4.00600 4.14588 4.16498 4.29587 4.33199 4.36134 4.40285 4.42652 4.46329 4.52679 4.69878 4.72799 4.81411 4.86166 4.94369 5.09309 5.18970 5.28401 5.31567 5.37921 5.49664 5.60845 5.88751 5.91627 6.41200 6.50064 6.66000 6.79342 6.90452 7.29555 7.50737 7.79339 8.72008 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.001954 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.319245 B =14327.813111 C =15086.841035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.437 3.563 4 O -0.533 6.533 5 C 0.131 3.869 6 H 0.145 0.855 7 O -0.539 6.539 8 C -0.102 4.102 9 C -0.116 4.116 10 C 0.105 3.895 11 N -0.625 5.625 12 C 0.706 3.294 13 O -0.628 6.628 14 N -0.730 5.730 15 C 0.137 3.863 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.578 5.578 19 C -0.330 4.330 20 H 0.064 0.936 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.233 1.233 27 C 0.129 3.871 28 C -0.129 4.129 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.408 0.592 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.392 0.608 42 H 0.281 0.719 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.344 4.692 7.037 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.281 3.719 4 O -0.422 6.422 5 C 0.070 3.930 6 H 0.162 0.838 7 O -0.347 6.347 8 C -0.121 4.121 9 C -0.154 4.154 10 C -0.017 4.017 11 N -0.362 5.362 12 C 0.408 3.592 13 O -0.510 6.510 14 N -0.390 5.390 15 C 0.008 3.992 16 C 0.234 3.766 17 O -0.500 6.500 18 N -0.218 5.218 19 C -0.459 4.459 20 H 0.082 0.918 21 C -0.209 4.209 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.156 1.156 27 C 0.007 3.993 28 C -0.167 4.167 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.249 0.751 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.228 0.772 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -29.205 4.702 7.592 30.540 hybrid contribution 0.253 -0.134 -0.615 0.678 sum -28.952 4.568 6.977 30.129 Atomic orbital electron populations 1.23562 0.75177 1.05713 1.02475 1.86599 1.24692 1.32367 1.82995 1.25219 0.93721 0.81612 0.71378 1.90683 1.67682 1.37436 1.46446 1.21687 0.84137 0.85372 1.01816 0.83762 1.86663 1.75800 1.18163 1.54046 1.21696 0.96634 0.97423 0.96312 1.21835 0.93720 1.03083 0.96801 1.21842 0.98838 0.82180 0.98866 1.47336 1.06966 1.07134 1.74738 1.15855 0.80907 0.84620 0.77843 1.90862 1.76569 1.22365 1.61183 1.44946 1.05925 1.13505 1.74609 1.20693 0.85534 0.89666 1.03263 1.20495 0.87445 0.86426 0.82269 1.90518 1.84320 1.18857 1.56301 1.41919 1.06772 1.10740 1.62336 1.19024 0.83156 0.96895 1.46819 0.91774 1.26062 0.94165 1.04635 0.95990 1.69776 1.01154 1.38470 1.47132 0.85450 0.79824 0.76642 0.80252 1.18081 1.19908 1.15604 1.21573 0.77179 1.02459 0.98071 1.22093 1.02907 0.94255 0.97442 0.85227 0.92255 0.91726 0.75324 0.88579 0.91606 0.88251 0.90700 0.89231 0.75143 0.88239 0.88002 0.77238 0.90952 0.90024 0.90183 0.91377 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.56 113.37 1.20 1.39 16 2 O -0.35 -4.16 7.76 -51.41 -0.40 -4.56 16 3 C 0.44 6.26 7.13 71.24 0.51 6.77 16 4 O -0.53 -10.83 16.07 28.39 0.46 -10.37 16 5 C 0.13 1.46 3.09 29.85 0.09 1.55 16 6 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 7 O -0.54 -6.92 12.30 -129.95 -1.60 -8.52 16 8 C -0.10 -1.00 1.91 -10.77 -0.02 -1.02 16 9 C -0.12 -1.42 5.23 30.67 0.16 -1.26 16 10 C 0.11 1.70 6.38 86.36 0.55 2.25 16 11 N -0.62 -13.17 2.97 -836.90 -2.49 -15.66 16 12 C 0.71 20.83 8.29 179.05 1.49 22.32 16 13 O -0.63 -22.24 15.77 -3.99 -0.06 -22.30 16 14 N -0.73 -22.54 5.44 -482.31 -2.62 -25.16 16 15 C 0.14 4.50 6.16 85.63 0.53 5.03 16 16 C 0.45 19.25 7.85 87.65 0.69 19.94 16 17 O -0.61 -31.15 15.24 -3.08 -0.05 -31.20 16 18 N -0.58 -26.32 5.09 -306.99 -1.56 -27.88 16 19 C -0.33 -18.57 10.16 84.04 0.85 -17.71 16 20 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 21 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 22 N -0.93 -54.06 13.96 21.66 0.30 -53.76 16 23 Si 0.96 37.86 27.74 68.60 1.90 39.76 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 27 C 0.13 2.12 6.44 86.36 0.56 2.68 16 28 C -0.13 -1.52 4.88 30.67 0.15 -1.38 16 29 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 31 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 32 H 0.40 3.11 8.79 -74.06 -0.65 2.46 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 1.03 7.64 -2.39 -0.02 1.01 16 36 H 0.07 1.44 5.65 -2.38 -0.01 1.43 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.41 12.59 4.93 -92.71 -0.46 12.13 16 39 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.39 15.00 5.76 -92.71 -0.53 14.47 16 42 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.08 1.64 7.00 -2.39 -0.02 1.63 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.04 5.45 -2.39 -0.01 1.03 16 Total: -1.00 -79.61 377.12 0.45 -79.16 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.65 Total: 39.93 kcal Atomic # 6 Polarization: 33.35 SS G_CDS: 7.22 Total: 40.56 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.37 Total: -122.47 kcal Atomic # 8 Polarization: -75.29 SS G_CDS: -1.65 Total: -76.94 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Total: -79.61 0.45 -79.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323174394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.228 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds