Wall clock time and date at job start Wed Apr 1 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99990 * 2 1 4 4 O 1.20823 * 120.00438 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00214 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46855 * 54.99629 * 5 3 2 7 7 O 1.42900 * 109.47550 * 175.00330 * 5 3 2 8 8 C 1.53004 * 109.47120 * 295.00635 * 5 3 2 9 9 C 1.53046 * 109.45943 * 179.97438 * 8 5 3 10 10 C 1.53193 * 109.33832 * 178.62732 * 9 8 5 11 11 N 1.46932 * 108.77265 * 54.61659 * 10 9 8 12 12 C 1.34777 * 120.62687 * 126.36981 * 11 10 9 13 13 O 1.21593 * 119.99662 * 174.96166 * 12 11 10 14 14 N 1.34774 * 120.00483 * 354.96416 * 12 11 10 15 15 C 1.46497 * 120.00410 * 185.07213 * 14 12 11 16 16 C 1.50703 * 109.47147 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00167 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99732 * 180.02562 * 16 15 14 19 19 C 1.37090 * 119.99715 * 180.02562 * 18 16 15 20 20 H 1.08007 * 120.00358 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00142 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00279 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99632 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47195 * 90.00234 * 23 21 19 25 25 H 1.48506 * 109.46805 * 210.00294 * 23 21 19 26 26 H 1.48494 * 109.46891 * 329.99730 * 23 21 19 27 27 C 1.46923 * 118.74092 * 306.38761 * 11 10 9 28 28 C 1.53031 * 109.48875 * 59.90727 * 8 5 3 29 29 H 1.08998 * 109.47279 * 299.99727 * 1 2 3 30 30 H 1.08998 * 109.46830 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 32 32 H 0.96694 * 113.99856 * 60.00154 * 7 5 3 33 33 H 1.09002 * 109.44473 * 299.95774 * 8 5 3 34 34 H 1.08992 * 109.49784 * 58.65586 * 9 8 5 35 35 H 1.08999 * 109.49195 * 298.59675 * 9 8 5 36 36 H 1.08994 * 109.58557 * 174.39866 * 10 9 8 37 37 H 1.08994 * 109.58505 * 294.68897 * 10 9 8 38 38 H 0.97003 * 119.99362 * 5.07018 * 14 12 11 39 39 H 1.08994 * 109.47325 * 299.99999 * 15 14 12 40 40 H 1.09000 * 109.46955 * 59.99851 * 15 14 12 41 41 H 0.96997 * 119.99963 * 359.97438 * 18 16 15 42 42 H 0.97001 * 120.00253 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.58572 * 173.39553 * 27 11 10 44 44 H 1.08993 * 109.58833 * 293.68111 * 27 11 10 45 45 H 1.09006 * 109.46722 * 61.40538 * 28 8 5 46 46 H 1.08996 * 109.52988 * 301.34021 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9604 0.7050 -0.8409 7 8 3.9719 2.6401 -0.1169 8 6 4.1071 0.6929 1.3082 9 6 5.6355 0.7726 1.3083 10 6 6.1722 0.2208 2.6328 11 7 5.6385 -1.1336 2.8317 12 6 6.4665 -2.1692 3.0734 13 8 6.0090 -3.2669 3.3269 14 7 7.8014 -1.9882 3.0342 15 6 8.7010 -3.1344 3.1866 16 6 10.1308 -2.6652 3.1051 17 8 10.3744 -1.4891 2.9368 18 7 11.1387 -3.5527 3.2192 19 6 12.4394 -3.1258 3.1456 20 1 12.6564 -2.0784 2.9958 21 6 13.4786 -4.0407 3.2628 22 7 14.7254 -3.6315 3.1927 23 14 13.1033 -5.8525 3.5198 24 1 12.9896 -6.5264 2.2014 25 1 14.1987 -6.4787 4.3030 26 1 11.8233 -5.9927 4.2595 27 6 4.1852 -1.3377 2.7617 28 6 3.6712 -0.7685 1.4355 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.6562 3.2071 0.5999 33 1 3.7134 1.2633 2.1495 34 1 5.9456 1.8112 1.1945 35 1 6.0305 0.1823 0.4814 36 1 7.2610 0.1831 2.5984 37 1 5.8545 0.8650 3.4525 38 1 8.1666 -1.0989 2.9050 39 1 8.5276 -3.6063 4.1536 40 1 8.5094 -3.8548 2.3913 41 1 10.9438 -4.4932 3.3542 42 1 15.4508 -4.2701 3.2749 43 1 3.9630 -2.4035 2.8124 44 1 3.7036 -0.8240 3.5936 45 1 4.0847 -1.3444 0.6074 46 1 2.5831 -0.8276 1.4120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323174395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:11 Heat of formation + Delta-G solvation = -188.906969 kcal Electronic energy + Delta-G solvation = -30329.118332 eV Core-core repulsion = 25833.560874 eV Total energy + Delta-G solvation = -4495.557458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36545 -40.37775 -38.77358 -38.22493 -37.28411 -36.27374 -34.60513 -33.87726 -33.27149 -31.80836 -31.30792 -29.48149 -27.94307 -27.12781 -24.71311 -24.16238 -23.29654 -21.68809 -21.14320 -19.76505 -19.60981 -18.94053 -18.55857 -18.06870 -17.75735 -16.97784 -16.41644 -16.21856 -15.76956 -15.55510 -15.29804 -14.98229 -14.70979 -14.50119 -14.40510 -14.24087 -13.91545 -13.79642 -13.48005 -13.14704 -13.13627 -12.95103 -12.64841 -12.55581 -12.41151 -12.21133 -12.15649 -12.05277 -11.58522 -11.41759 -11.24472 -11.21468 -11.00042 -10.80900 -10.64574 -10.42111 -10.07590 -10.02078 -9.70459 -9.03800 -8.77648 -8.54542 -8.30975 -6.41301 -3.93874 1.59975 2.11988 2.62059 2.99437 3.04119 3.12326 3.26315 3.56712 3.60320 3.91365 4.00403 4.03294 4.20245 4.28585 4.48358 4.56265 4.64030 4.71065 4.75662 4.80254 4.97287 5.03194 5.05791 5.13794 5.14807 5.38440 5.41135 5.52664 5.58966 5.64486 5.73902 5.77718 5.80049 5.83490 5.85345 5.96948 6.41863 6.62760 6.85048 6.94893 7.20190 7.44258 7.99401 8.06854 8.43633 8.68684 8.81132 9.29325 9.62846 10.70794 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.001998 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.699986 B =14008.413402 C =14673.690829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.433 3.567 4 O -0.502 6.502 5 C 0.124 3.876 6 H 0.139 0.861 7 O -0.527 6.527 8 C -0.112 4.112 9 C -0.124 4.124 10 C 0.109 3.891 11 N -0.631 5.631 12 C 0.710 3.290 13 O -0.597 6.597 14 N -0.726 5.726 15 C 0.125 3.875 16 C 0.439 3.561 17 O -0.580 6.580 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C 0.134 3.866 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.386 0.614 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.407 0.593 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.375 0.625 42 H 0.276 0.724 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.152 6.579 -4.309 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.276 3.724 4 O -0.389 6.389 5 C 0.063 3.937 6 H 0.156 0.844 7 O -0.333 6.333 8 C -0.131 4.131 9 C -0.162 4.162 10 C -0.014 4.014 11 N -0.370 5.370 12 C 0.411 3.589 13 O -0.476 6.476 14 N -0.385 5.385 15 C -0.004 4.004 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.214 5.214 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C 0.010 3.990 28 C -0.177 4.177 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.235 0.765 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.248 0.752 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.208 0.792 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -26.971 6.573 -4.773 28.168 hybrid contribution -0.418 -0.732 0.604 1.037 sum -27.390 5.841 -4.169 28.314 Atomic orbital electron populations 1.23332 0.76324 1.04040 1.02614 1.86607 1.23526 1.32984 1.83455 1.24974 0.93305 0.81822 0.72348 1.90693 1.66952 1.36433 1.44854 1.21699 0.85013 0.85483 1.01467 0.84351 1.86686 1.75616 1.17716 1.53252 1.21789 0.97504 0.97889 0.95893 1.21905 0.93105 1.02794 0.98383 1.21660 0.99527 0.83164 0.97083 1.47222 1.06452 1.07095 1.76193 1.15738 0.81182 0.83894 0.78096 1.90890 1.76061 1.23987 1.56617 1.44955 1.03667 1.12273 1.77648 1.20813 0.88297 0.88290 1.02992 1.19653 0.85924 0.86968 0.85000 1.90526 1.84085 1.16922 1.54933 1.42114 1.06593 1.08396 1.64261 1.19435 0.78857 0.97911 1.47624 0.86080 1.25070 0.94942 0.98746 0.97177 1.69615 0.98368 1.35377 1.47947 0.86671 0.78797 0.84838 0.79195 1.19390 1.19999 1.19197 1.21381 0.78515 1.02970 0.96092 1.22190 1.02449 0.94072 0.98993 0.91790 0.91845 0.87758 0.76515 0.90036 0.89468 0.90592 0.89352 0.91182 0.75241 0.89832 0.89956 0.79224 0.91386 0.88513 0.91973 0.90574 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 101.05 1.07 1.22 16 2 O -0.35 -2.41 7.76 -39.23 -0.30 -2.72 16 3 C 0.43 3.48 7.13 36.01 0.26 3.74 16 4 O -0.50 -5.40 16.07 -25.46 -0.41 -5.81 16 5 C 0.12 0.82 3.09 -27.88 -0.09 0.73 16 6 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 7 O -0.53 -3.89 12.30 -55.13 -0.68 -4.57 16 8 C -0.11 -0.68 1.91 -90.58 -0.17 -0.86 16 9 C -0.12 -0.89 5.23 -26.61 -0.14 -1.02 16 10 C 0.11 0.97 6.43 -3.71 -0.02 0.95 16 11 N -0.63 -7.17 2.97 -178.50 -0.53 -7.70 16 12 C 0.71 10.93 8.30 -86.92 -0.72 10.21 16 13 O -0.60 -10.97 15.79 5.28 0.08 -10.88 16 14 N -0.73 -11.59 5.44 -66.42 -0.36 -11.95 16 15 C 0.12 2.15 6.16 -5.19 -0.03 2.12 16 16 C 0.44 9.52 7.85 -10.98 -0.09 9.43 16 17 O -0.58 -14.38 15.24 5.55 0.08 -14.30 16 18 N -0.58 -13.25 5.09 -10.96 -0.06 -13.31 16 19 C -0.31 -8.46 10.16 -14.94 -0.15 -8.61 16 20 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 21 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 22 N -0.87 -24.79 13.96 55.50 0.77 -24.02 16 23 Si 0.88 18.87 27.74 -169.99 -4.72 14.15 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 27 C 0.13 1.23 6.42 -3.71 -0.02 1.20 16 28 C -0.14 -0.97 4.88 -26.61 -0.13 -1.10 16 29 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.39 1.88 8.79 45.56 0.40 2.28 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.56 7.64 -51.93 -0.40 0.16 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.89 5.56 -51.93 -0.29 0.60 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 6.37 4.89 -40.82 -0.20 6.17 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 42 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.10 1.05 7.03 -51.93 -0.37 0.69 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.58 5.45 -51.93 -0.28 0.30 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -35.34 377.09 -6.34 -41.68 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.57 Total: 14.63 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: -0.34 Total: 19.11 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.17 Total: -56.98 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.22 Total: -38.28 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.72 Total: 14.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.34 -6.34 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323174395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.226 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds