Wall clock time and date at job start Wed Apr 1 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99990 * 2 1 4 4 O 1.20823 * 120.00438 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00214 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46855 * 54.99629 * 5 3 2 7 7 O 1.42900 * 109.47550 * 175.00330 * 5 3 2 8 8 C 1.53004 * 109.47120 * 295.00635 * 5 3 2 9 9 C 1.53046 * 109.45943 * 179.97438 * 8 5 3 10 10 C 1.53193 * 109.33832 * 178.62732 * 9 8 5 11 11 N 1.46932 * 108.77265 * 54.61659 * 10 9 8 12 12 C 1.34777 * 120.62687 * 126.36981 * 11 10 9 13 13 O 1.21593 * 119.99662 * 174.96166 * 12 11 10 14 14 N 1.34774 * 120.00483 * 354.96416 * 12 11 10 15 15 C 1.46497 * 120.00410 * 185.07213 * 14 12 11 16 16 C 1.50703 * 109.47147 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00167 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99732 * 180.02562 * 16 15 14 19 19 C 1.37090 * 119.99715 * 180.02562 * 18 16 15 20 20 H 1.08007 * 120.00358 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00142 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00279 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99632 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47195 * 90.00234 * 23 21 19 25 25 H 1.48506 * 109.46805 * 210.00294 * 23 21 19 26 26 H 1.48494 * 109.46891 * 329.99730 * 23 21 19 27 27 C 1.46923 * 118.74092 * 306.38761 * 11 10 9 28 28 C 1.53031 * 109.48875 * 59.90727 * 8 5 3 29 29 H 1.08998 * 109.47279 * 299.99727 * 1 2 3 30 30 H 1.08998 * 109.46830 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 32 32 H 0.96694 * 113.99856 * 60.00154 * 7 5 3 33 33 H 1.09002 * 109.44473 * 299.95774 * 8 5 3 34 34 H 1.08992 * 109.49784 * 58.65586 * 9 8 5 35 35 H 1.08999 * 109.49195 * 298.59675 * 9 8 5 36 36 H 1.08994 * 109.58557 * 174.39866 * 10 9 8 37 37 H 1.08994 * 109.58505 * 294.68897 * 10 9 8 38 38 H 0.97003 * 119.99362 * 5.07018 * 14 12 11 39 39 H 1.08994 * 109.47325 * 299.99999 * 15 14 12 40 40 H 1.09000 * 109.46955 * 59.99851 * 15 14 12 41 41 H 0.96997 * 119.99963 * 359.97438 * 18 16 15 42 42 H 0.97001 * 120.00253 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.58572 * 173.39553 * 27 11 10 44 44 H 1.08993 * 109.58833 * 293.68111 * 27 11 10 45 45 H 1.09006 * 109.46722 * 61.40538 * 28 8 5 46 46 H 1.08996 * 109.52988 * 301.34021 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9604 0.7050 -0.8409 7 8 3.9719 2.6401 -0.1169 8 6 4.1071 0.6929 1.3082 9 6 5.6355 0.7726 1.3083 10 6 6.1722 0.2208 2.6328 11 7 5.6385 -1.1336 2.8317 12 6 6.4665 -2.1692 3.0734 13 8 6.0090 -3.2669 3.3269 14 7 7.8014 -1.9882 3.0342 15 6 8.7010 -3.1344 3.1866 16 6 10.1308 -2.6652 3.1051 17 8 10.3744 -1.4891 2.9368 18 7 11.1387 -3.5527 3.2192 19 6 12.4394 -3.1258 3.1456 20 1 12.6564 -2.0784 2.9958 21 6 13.4786 -4.0407 3.2628 22 7 14.7254 -3.6315 3.1927 23 14 13.1033 -5.8525 3.5198 24 1 12.9896 -6.5264 2.2014 25 1 14.1987 -6.4787 4.3030 26 1 11.8233 -5.9927 4.2595 27 6 4.1852 -1.3377 2.7617 28 6 3.6712 -0.7685 1.4355 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.6562 3.2071 0.5999 33 1 3.7134 1.2633 2.1495 34 1 5.9456 1.8112 1.1945 35 1 6.0305 0.1823 0.4814 36 1 7.2610 0.1831 2.5984 37 1 5.8545 0.8650 3.4525 38 1 8.1666 -1.0989 2.9050 39 1 8.5276 -3.6063 4.1536 40 1 8.5094 -3.8548 2.3913 41 1 10.9438 -4.4932 3.3542 42 1 15.4508 -4.2701 3.2749 43 1 3.9630 -2.4035 2.8124 44 1 3.7036 -0.8240 3.5936 45 1 4.0847 -1.3444 0.6074 46 1 2.5831 -0.8276 1.4120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323174395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:11 Heat of formation + Delta-G solvation = -217.043860 kcal Electronic energy + Delta-G solvation = -30330.338439 eV Core-core repulsion = 25833.560874 eV Total energy + Delta-G solvation = -4496.777565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00622 -41.42761 -40.29505 -39.15482 -37.99057 -36.97676 -36.29437 -35.41499 -34.10688 -33.79555 -32.03516 -30.23274 -29.11608 -27.86755 -26.25561 -25.09300 -24.08937 -22.36939 -21.85114 -21.45286 -20.80411 -20.44253 -19.45375 -19.04735 -18.42089 -17.68708 -17.50408 -17.15875 -16.94499 -16.89865 -16.71612 -15.99087 -15.93975 -15.57761 -15.30074 -15.05606 -14.96755 -14.69454 -14.60104 -14.31072 -14.18606 -14.06194 -13.86201 -13.58644 -13.46310 -13.24425 -13.01253 -12.94684 -12.80759 -12.43325 -12.23833 -11.99992 -11.98634 -11.78924 -11.61438 -11.56781 -11.44937 -11.23199 -10.99691 -10.63615 -10.33391 -10.25311 -9.50325 -8.44210 -6.05981 0.99427 1.32388 1.35210 1.44683 1.55112 1.62797 1.80124 2.10750 2.21638 2.70618 3.02203 3.10804 3.12194 3.43206 3.66177 3.76955 3.88766 4.00686 4.14451 4.16327 4.29630 4.33223 4.35903 4.40353 4.42640 4.46239 4.52700 4.70457 4.72924 4.80700 4.86392 4.94566 5.09443 5.19144 5.28350 5.31500 5.38038 5.49752 5.60784 5.88691 5.91495 6.41399 6.50153 6.66108 6.79438 6.90458 7.29653 7.50670 7.79443 8.72075 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.001998 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.699986 B =14008.413402 C =14673.690829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.437 3.563 4 O -0.533 6.533 5 C 0.131 3.869 6 H 0.145 0.855 7 O -0.539 6.539 8 C -0.101 4.101 9 C -0.117 4.117 10 C 0.105 3.895 11 N -0.624 5.624 12 C 0.706 3.294 13 O -0.628 6.628 14 N -0.730 5.730 15 C 0.137 3.863 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.578 5.578 19 C -0.330 4.330 20 H 0.064 0.936 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.233 1.233 27 C 0.130 3.870 28 C -0.129 4.129 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.396 0.604 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.408 0.592 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.392 0.608 42 H 0.281 0.719 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.577 5.219 -4.057 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.281 3.719 4 O -0.422 6.422 5 C 0.070 3.930 6 H 0.162 0.838 7 O -0.347 6.347 8 C -0.120 4.120 9 C -0.155 4.155 10 C -0.017 4.017 11 N -0.362 5.362 12 C 0.408 3.592 13 O -0.510 6.510 14 N -0.390 5.390 15 C 0.008 3.992 16 C 0.234 3.766 17 O -0.500 6.500 18 N -0.218 5.218 19 C -0.459 4.459 20 H 0.082 0.918 21 C -0.209 4.209 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.156 1.156 27 C 0.008 3.992 28 C -0.167 4.167 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.249 0.751 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.228 0.772 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -29.445 5.245 -4.525 30.249 hybrid contribution 0.265 -0.151 0.499 0.585 sum -29.180 5.094 -4.026 29.894 Atomic orbital electron populations 1.23563 0.75167 1.05715 1.02477 1.86596 1.24695 1.32366 1.82993 1.25210 0.93708 0.81616 0.71379 1.90683 1.67689 1.37425 1.46449 1.21688 0.84153 0.85378 1.01818 0.83797 1.86665 1.75754 1.18162 1.54092 1.21691 0.96616 0.97435 0.96285 1.21838 0.93722 1.03091 0.96851 1.21837 0.98852 0.82163 0.98861 1.47333 1.06969 1.07082 1.74770 1.15856 0.81000 0.84327 0.78037 1.90865 1.76455 1.25486 1.58200 1.44944 1.03994 1.11919 1.78132 1.20693 0.84957 0.88921 1.04588 1.20492 0.87525 0.86255 0.82348 1.90515 1.85149 1.18704 1.55603 1.41919 1.05224 1.09483 1.65158 1.19023 0.81395 0.95901 1.49552 0.91774 1.26064 0.94116 1.04724 0.95970 1.69777 0.99838 1.37781 1.49142 0.85451 0.80056 0.76704 0.79958 1.18082 1.19907 1.15604 1.21556 0.77200 1.02427 0.98005 1.22098 1.02929 0.94284 0.97393 0.91715 0.92266 0.85221 0.75330 0.88563 0.88304 0.91642 0.90710 0.89131 0.75129 0.88235 0.88022 0.77239 0.90955 0.90235 0.90111 0.91333 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.56 113.37 1.20 1.39 16 2 O -0.35 -4.17 7.76 -51.33 -0.40 -4.57 16 3 C 0.44 6.30 7.13 71.24 0.51 6.81 16 4 O -0.53 -10.86 16.07 28.39 0.46 -10.41 16 5 C 0.13 1.48 3.09 29.85 0.09 1.57 16 6 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 7 O -0.54 -7.03 12.30 -129.95 -1.60 -8.63 16 8 C -0.10 -1.00 1.91 -10.77 -0.02 -1.02 16 9 C -0.12 -1.45 5.23 30.67 0.16 -1.29 16 10 C 0.11 1.70 6.43 86.36 0.56 2.25 16 11 N -0.62 -13.17 2.97 -836.92 -2.49 -15.65 16 12 C 0.71 20.84 8.30 179.06 1.49 22.32 16 13 O -0.63 -22.27 15.79 -4.01 -0.06 -22.33 16 14 N -0.73 -22.53 5.44 -482.30 -2.62 -25.15 16 15 C 0.14 4.50 6.16 85.63 0.53 5.03 16 16 C 0.45 19.25 7.85 87.66 0.69 19.94 16 17 O -0.61 -31.12 15.24 -3.05 -0.05 -31.17 16 18 N -0.58 -26.33 5.09 -306.98 -1.56 -27.89 16 19 C -0.33 -18.55 10.16 84.04 0.85 -17.70 16 20 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 21 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 22 N -0.93 -54.08 13.96 21.66 0.30 -53.78 16 23 Si 0.96 37.87 27.74 68.60 1.90 39.77 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 27 C 0.13 2.14 6.42 86.36 0.55 2.69 16 28 C -0.13 -1.52 4.88 30.67 0.15 -1.37 16 29 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 30 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 31 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.40 3.16 8.79 -74.06 -0.65 2.51 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 1.05 7.64 -2.39 -0.02 1.03 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.44 5.56 -2.39 -0.01 1.43 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.41 12.59 4.89 -92.71 -0.45 12.13 16 39 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.39 15.00 5.76 -92.71 -0.53 14.47 16 42 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.08 1.63 7.03 -2.39 -0.02 1.61 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.10 1.04 5.45 -2.39 -0.01 1.03 16 Total: -1.00 -79.63 377.09 0.46 -79.17 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.64 Total: 40.02 kcal Atomic # 6 Polarization: 33.40 SS G_CDS: 7.22 Total: 40.62 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.37 Total: -122.47 kcal Atomic # 8 Polarization: -75.46 SS G_CDS: -1.65 Total: -77.11 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.77 kcal Total: -79.63 0.46 -79.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323174395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.874 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds