Wall clock time and date at job start Wed Apr 1 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46760 * 2 1 4 4 N 1.41600 * 113.99680 * 179.97438 * 3 2 1 5 5 C 1.46497 * 120.00246 * 270.00096 * 4 3 2 6 6 C 1.34774 * 119.99880 * 90.00421 * 4 3 2 7 7 O 1.21277 * 120.00429 * 179.97438 * 6 4 3 8 8 C 1.50710 * 119.99964 * 359.97438 * 6 4 3 9 9 N 1.46497 * 109.47125 * 180.02562 * 8 6 4 10 10 C 1.34774 * 120.00160 * 180.02562 * 9 8 6 11 11 O 1.21348 * 119.99666 * 0.02562 * 10 9 8 12 12 C 1.49448 * 120.00247 * 180.02562 * 10 9 8 13 13 O 1.21355 * 120.00006 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00247 * 179.97438 * 12 10 9 15 15 C 1.47290 * 125.79121 * 359.97438 * 14 12 10 16 16 C 1.54325 * 107.30599 * 178.92556 * 15 14 12 17 17 C 1.55154 * 102.94303 * 337.81911 * 16 15 14 18 18 O 1.42902 * 111.00280 * 277.42723 * 17 16 15 19 19 C 1.50693 * 111.03939 * 153.59058 * 17 16 15 20 20 H 1.08004 * 120.00401 * 6.33015 * 19 17 16 21 21 C 1.37876 * 120.00383 * 186.33190 * 19 17 16 22 22 N 1.31512 * 119.99646 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00223 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47219 * 90.00069 * 23 21 19 25 25 H 1.48500 * 109.47001 * 209.99842 * 23 21 19 26 26 H 1.48498 * 109.46999 * 329.99572 * 23 21 19 27 27 C 1.47425 * 125.65138 * 179.97438 * 14 12 10 28 28 H 1.09005 * 109.46658 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47077 * 299.99570 * 1 2 3 30 30 H 1.08993 * 109.47530 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47077 * 240.00430 * 2 1 3 32 32 H 1.09002 * 109.47367 * 119.99838 * 2 1 3 33 33 H 1.09003 * 109.47260 * 270.00239 * 5 4 3 34 34 H 1.08999 * 109.47227 * 30.00052 * 5 4 3 35 35 H 1.09003 * 109.47428 * 150.00172 * 5 4 3 36 36 H 1.08998 * 109.46764 * 59.99866 * 8 6 4 37 37 H 1.09001 * 109.46628 * 299.99978 * 8 6 4 38 38 H 0.97005 * 120.00064 * 359.97438 * 9 8 6 39 39 H 1.09004 * 109.85762 * 59.50172 * 15 14 12 40 40 H 1.08995 * 110.00297 * 298.43119 * 15 14 12 41 41 H 1.09002 * 110.72180 * 219.45147 * 16 15 14 42 42 H 1.08997 * 110.72163 * 96.18354 * 16 15 14 43 43 H 0.96703 * 114.00194 * 173.65090 * 18 17 16 44 44 H 0.97010 * 119.99834 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36696 * 85.25946 * 27 14 12 46 46 H 1.08995 * 110.36608 * 323.04783 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4179 1.4592 0.0006 5 6 4.1476 1.5172 1.2695 6 6 4.0901 1.5123 -1.1663 7 8 5.2990 1.6085 -1.1660 8 6 3.3395 1.4521 -2.4718 9 7 4.2889 1.5267 -3.5849 10 6 3.8416 1.4911 -4.8558 11 8 2.6523 1.3977 -5.0779 12 6 4.8103 1.5666 -5.9913 13 8 5.9996 1.6605 -5.7692 14 7 4.3630 1.5305 -7.2622 15 6 2.9540 1.4186 -7.6767 16 6 2.9260 1.4433 -9.2195 17 6 4.2666 2.1359 -9.5804 18 8 4.1459 3.5577 -9.5021 19 6 4.7445 1.7116 -10.9451 20 1 4.1167 1.0926 -11.5689 21 6 5.9833 2.1136 -11.3976 22 7 6.7477 2.8678 -10.6383 23 14 6.5754 1.5883 -13.0896 24 1 6.1562 2.5966 -14.0959 25 1 8.0565 1.4805 -13.0843 26 1 5.9844 0.2701 -13.4336 27 6 5.2039 1.5964 -8.4713 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.2474 2.5561 1.5841 34 1 3.6007 0.9586 2.0291 35 1 5.1377 1.0802 1.1397 36 1 2.6442 2.2895 -2.5300 37 1 2.7854 0.5152 -2.5294 38 1 5.2396 1.6025 -3.4073 39 1 2.3841 2.2598 -7.2820 40 1 2.5317 0.4819 -7.3131 41 1 2.0801 2.0283 -9.5805 42 1 2.8949 0.4304 -9.6208 43 1 4.9806 4.0306 -9.6239 44 1 7.6192 3.1510 -10.9568 45 1 5.5698 0.6037 -8.7335 46 1 6.0394 2.2789 -8.3155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329862726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:47 Heat of formation + Delta-G solvation = -156.494539 kcal Electronic energy + Delta-G solvation = -30550.991302 eV Core-core repulsion = 26056.839352 eV Total energy + Delta-G solvation = -4494.151950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98239 -41.15776 -39.93715 -38.89764 -38.75476 -36.42019 -35.59289 -34.66810 -34.23508 -31.95711 -31.54025 -30.55891 -29.67002 -27.85676 -26.87967 -25.09787 -23.94705 -23.19060 -21.75115 -21.56010 -21.16360 -19.46898 -19.07883 -18.40344 -18.22641 -17.75895 -17.60490 -17.15493 -17.03936 -16.66595 -16.29833 -16.19327 -15.99823 -15.91033 -15.36560 -14.95537 -14.78166 -14.66044 -14.63229 -14.23934 -13.96005 -13.66860 -13.62330 -13.51093 -13.31769 -13.25506 -13.11296 -12.84150 -12.74249 -12.53495 -12.53021 -12.35030 -12.22099 -12.09204 -11.64336 -11.21156 -11.14105 -10.80464 -10.61165 -10.57970 -10.33205 -10.25342 -9.65483 -8.24491 -6.41354 0.26760 0.59492 1.05900 1.18884 1.44441 1.46424 1.55823 2.05346 2.32580 2.41872 2.64248 3.01568 3.22917 3.74377 3.78314 3.96493 4.06819 4.09962 4.15218 4.15306 4.18511 4.30257 4.34083 4.41128 4.49368 4.66065 4.73005 4.78521 4.83542 4.90116 4.96225 4.98714 5.07227 5.15121 5.15487 5.29368 5.34558 5.44834 5.75235 5.84348 6.06052 6.09114 6.32505 6.51920 6.65039 6.67602 6.84573 7.27167 7.35438 8.81064 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002187 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.793936 B =12797.632929 C =13555.080860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 O -0.145 6.145 4 N -0.474 5.474 5 C 0.081 3.919 6 C 0.521 3.479 7 O -0.544 6.544 8 C 0.106 3.894 9 N -0.689 5.689 10 C 0.526 3.474 11 O -0.519 6.519 12 C 0.502 3.498 13 O -0.561 6.561 14 N -0.581 5.581 15 C 0.117 3.883 16 C -0.115 4.115 17 C 0.232 3.768 18 O -0.587 6.587 19 C -0.553 4.553 20 H 0.071 0.929 21 C 0.026 3.974 22 N -0.915 5.915 23 Si 0.965 3.035 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.264 1.264 27 C 0.104 3.896 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.420 0.580 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.374 0.626 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.930 -6.932 23.552 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 O -0.150 6.150 4 N -0.251 5.251 5 C -0.058 4.058 6 C 0.310 3.690 7 O -0.422 6.422 8 C -0.020 4.020 9 N -0.346 5.346 10 C 0.306 3.694 11 O -0.394 6.394 12 C 0.286 3.714 13 O -0.442 6.442 14 N -0.313 5.313 15 C -0.004 4.004 16 C -0.152 4.152 17 C 0.192 3.808 18 O -0.395 6.395 19 C -0.591 4.591 20 H 0.089 0.911 21 C -0.175 4.175 22 N -0.554 5.554 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.189 1.189 27 C -0.018 4.018 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.259 0.741 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.223 0.777 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.091 -6.802 23.749 27.504 hybrid contribution 1.793 -0.029 -0.859 1.988 sum -10.299 -6.830 22.890 26.013 Atomic orbital electron populations 1.21757 0.90518 1.04357 1.03654 1.23409 0.97255 0.83550 1.02381 1.90711 0.99853 1.27561 1.96923 1.49784 0.96373 1.72286 1.06668 1.22159 0.96694 1.04161 0.82740 1.20580 0.87076 0.75741 0.85597 1.90800 1.14255 1.50980 1.86195 1.21264 0.91605 1.06905 0.82238 1.45434 1.12819 1.72535 1.03771 1.19648 0.87997 0.77945 0.83785 1.90725 1.15961 1.48124 1.84623 1.20075 0.88319 0.79350 0.83705 1.90731 1.17648 1.51368 1.84403 1.48750 1.11025 1.66843 1.04676 1.22257 0.80107 1.02703 0.95350 1.22724 0.97898 1.01467 0.93149 1.19882 0.90954 0.78840 0.91122 1.86122 1.37494 1.20498 1.95387 1.21756 1.02397 1.33348 1.01643 0.91062 1.25831 0.96396 0.94093 1.01150 1.69829 1.11401 1.35932 1.38269 0.85440 0.77049 0.78972 0.79478 1.20177 1.21186 1.18865 1.23090 0.95145 1.00395 0.83127 0.88509 0.91024 0.91739 0.92088 0.90632 0.90672 0.87607 0.89691 0.86223 0.86185 0.74098 0.90984 0.89278 0.89494 0.88790 0.77739 0.92091 0.92436 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 10.28 71.98 0.74 -0.13 16 2 C 0.01 0.10 7.09 71.98 0.51 0.61 16 3 O -0.15 -1.95 10.48 -38.78 -0.41 -2.36 16 4 N -0.47 -7.42 3.36 -484.52 -1.63 -9.05 16 5 C 0.08 0.87 10.82 127.77 1.38 2.25 16 6 C 0.52 10.93 7.82 87.66 0.69 11.61 16 7 O -0.54 -14.90 15.25 -3.02 -0.05 -14.94 16 8 C 0.11 2.18 5.46 85.64 0.47 2.65 16 9 N -0.69 -19.33 5.52 -468.14 -2.58 -21.91 16 10 C 0.53 17.62 7.86 87.27 0.69 18.31 16 11 O -0.52 -17.33 14.15 -3.24 -0.05 -17.37 16 12 C 0.50 20.77 7.92 87.27 0.69 21.46 16 13 O -0.56 -26.16 16.73 -3.26 -0.05 -26.21 16 14 N -0.58 -24.81 3.34 -812.69 -2.71 -27.52 16 15 C 0.12 4.33 5.50 86.68 0.48 4.81 16 16 C -0.11 -4.48 6.13 31.78 0.19 -4.29 16 17 C 0.23 11.27 0.87 -10.15 -0.01 11.26 16 18 O -0.59 -30.34 13.16 -148.98 -1.96 -32.30 16 19 C -0.55 -28.48 8.27 25.60 0.21 -28.26 16 20 H 0.07 3.54 7.79 -2.91 -0.02 3.51 16 21 C 0.03 1.37 5.29 84.65 0.45 1.81 16 22 N -0.92 -49.46 10.69 21.45 0.23 -49.23 16 23 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 C 0.10 5.11 5.38 86.85 0.47 5.58 16 28 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.55 7.13 -2.39 -0.02 0.53 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 1.04 7.42 -2.39 -0.02 1.03 16 36 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.12 2.04 7.13 -2.39 -0.02 2.02 16 38 H 0.42 12.72 6.91 -92.70 -0.64 12.07 16 39 H 0.07 2.65 7.59 -2.38 -0.02 2.63 16 40 H 0.09 2.87 7.71 -2.39 -0.02 2.85 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 43 H 0.37 20.08 7.56 -74.06 -0.56 19.52 16 44 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 45 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 46 H 0.06 3.18 7.32 -2.39 -0.02 3.16 16 Total: -1.00 -67.07 388.27 -0.40 -67.46 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.17 Total: 42.31 kcal Atomic # 6 Polarization: 40.71 SS G_CDS: 6.95 Total: 47.66 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -6.69 Total: -107.70 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -2.51 Total: -93.19 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -67.07 -0.40 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329862726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.030 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds