Wall clock time and date at job start Wed Apr 1 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.46866 * 2 1 4 4 N 1.41605 * 113.99967 * 179.97438 * 3 2 1 5 5 C 1.46496 * 119.99734 * 270.00209 * 4 3 2 6 6 C 1.34776 * 119.99639 * 89.99826 * 4 3 2 7 7 O 1.21285 * 119.99360 * 179.97438 * 6 4 3 8 8 C 1.50694 * 120.00333 * 0.02562 * 6 4 3 9 9 N 1.46506 * 109.46993 * 179.97438 * 8 6 4 10 10 C 1.34777 * 119.99846 * 179.97438 * 9 8 6 11 11 O 1.21350 * 119.99865 * 359.97438 * 10 9 8 12 12 C 1.49449 * 119.99831 * 180.02562 * 10 9 8 13 13 O 1.21349 * 119.99754 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99933 * 180.02562 * 12 10 9 15 15 C 1.47021 * 125.64937 * 359.94885 * 14 12 10 16 16 C 1.54370 * 107.28813 * 181.13182 * 15 14 12 17 17 C 1.55147 * 102.92092 * 22.14333 * 16 15 14 18 18 O 1.42905 * 111.00578 * 82.63751 * 17 16 15 19 19 C 1.50702 * 111.00308 * 206.45025 * 17 16 15 20 20 H 1.08002 * 120.00299 * 356.82421 * 19 17 16 21 21 C 1.37884 * 119.99942 * 176.53980 * 19 17 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 17 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 17 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.47423 * 125.64837 * 179.97438 * 14 12 10 28 28 H 1.08996 * 109.46858 * 300.00195 * 1 2 3 29 29 H 1.08998 * 109.46883 * 60.00363 * 1 2 3 30 30 H 1.08997 * 109.46791 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47386 * 240.00353 * 2 1 3 32 32 H 1.08994 * 109.47336 * 119.99801 * 2 1 3 33 33 H 1.09006 * 109.47071 * 269.99853 * 5 4 3 34 34 H 1.08998 * 109.47469 * 29.99423 * 5 4 3 35 35 H 1.08998 * 109.47291 * 150.00214 * 5 4 3 36 36 H 1.09002 * 109.47346 * 59.99888 * 8 6 4 37 37 H 1.08997 * 109.47303 * 299.99740 * 8 6 4 38 38 H 0.96999 * 119.99794 * 359.97438 * 9 8 6 39 39 H 1.09001 * 109.88518 * 300.52094 * 15 14 12 40 40 H 1.09002 * 109.88165 * 61.68403 * 15 14 12 41 41 H 1.09001 * 110.70699 * 263.79361 * 16 15 14 42 42 H 1.09008 * 110.75075 * 140.51110 * 16 15 14 43 43 H 0.96701 * 113.99475 * 183.17547 * 18 17 16 44 44 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 45 45 H 1.08996 * 110.36708 * 36.99367 * 27 14 12 46 46 H 1.08999 * 110.36888 * 274.67114 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4180 1.4592 0.0006 5 6 4.1476 1.5172 1.2696 6 6 4.0902 1.5122 -1.1664 7 8 5.2992 1.6085 -1.1658 8 6 3.3395 1.4531 -2.4717 9 7 4.2891 1.5286 -3.5849 10 6 3.8417 1.4929 -4.8558 11 8 2.6525 1.3978 -5.0780 12 6 4.8104 1.5693 -5.9913 13 8 5.9996 1.6640 -5.7690 14 7 4.3630 1.5342 -7.2621 15 6 2.9557 1.4222 -7.6723 16 6 2.9287 1.3915 -9.2155 17 6 4.3613 0.9193 -9.5782 18 8 4.4670 -0.5037 -9.4996 19 6 4.7633 1.4132 -10.9440 20 1 4.0597 1.9692 -11.5459 21 6 6.0314 1.1603 -11.4230 22 7 6.8881 0.4833 -10.6900 23 14 6.5321 1.7792 -13.1128 24 1 7.1191 3.1376 -12.9885 25 1 7.5375 0.8573 -13.6997 26 1 5.3378 1.8348 -13.9936 27 6 5.2039 1.6011 -8.4712 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.2474 2.5561 1.5842 34 1 3.6006 0.9586 2.0291 35 1 5.1377 1.0803 1.1398 36 1 2.6448 2.2910 -2.5298 37 1 2.7849 0.5166 -2.5298 38 1 5.2396 1.6042 -3.4072 39 1 2.5261 0.5020 -7.2763 40 1 2.3939 2.2826 -7.3085 41 1 2.7371 2.3863 -9.6175 42 1 2.1854 0.6795 -9.5747 43 1 5.3566 -0.8420 -9.6704 44 1 7.7801 0.3051 -11.0271 45 1 6.1361 1.0582 -8.3154 46 1 5.4079 2.6390 -8.7344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329862727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:50 Heat of formation + Delta-G solvation = -156.615618 kcal Electronic energy + Delta-G solvation = -30554.519731 eV Core-core repulsion = 26060.362531 eV Total energy + Delta-G solvation = -4494.157200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98957 -41.16162 -39.93966 -38.90100 -38.75542 -36.43808 -35.60390 -34.66956 -34.19900 -31.96073 -31.54175 -30.56074 -29.69499 -27.85677 -26.88131 -25.09903 -23.95029 -23.19083 -21.75213 -21.55678 -21.16563 -19.47325 -19.11032 -18.40521 -18.22434 -17.77053 -17.61242 -17.10640 -17.05262 -16.68892 -16.34757 -16.16932 -15.99875 -15.83608 -15.44553 -14.88466 -14.78480 -14.68673 -14.64910 -14.23279 -13.97351 -13.67017 -13.62559 -13.50650 -13.33163 -13.25894 -13.11478 -12.84295 -12.74646 -12.53301 -12.52821 -12.33504 -12.22972 -12.10053 -11.64579 -11.22576 -11.14331 -10.80036 -10.61572 -10.58124 -10.34143 -10.25471 -9.65108 -8.25383 -6.41940 0.26458 0.59234 1.05950 1.18731 1.44172 1.46487 1.56094 2.05008 2.32621 2.41675 2.64126 3.00853 3.22998 3.73974 3.78197 3.96504 4.07905 4.09757 4.14957 4.15303 4.18001 4.30146 4.34224 4.40932 4.49436 4.65633 4.72351 4.78446 4.83387 4.89952 4.95982 4.97247 5.07123 5.15035 5.15379 5.29056 5.34636 5.44363 5.75383 5.84059 6.04375 6.08785 6.32150 6.51727 6.64842 6.66984 6.84198 7.28766 7.36397 8.80486 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.002191 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.072762 B =12774.210998 C =13527.124666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 O -0.144 6.144 4 N -0.474 5.474 5 C 0.081 3.919 6 C 0.521 3.479 7 O -0.544 6.544 8 C 0.106 3.894 9 N -0.689 5.689 10 C 0.526 3.474 11 O -0.518 6.518 12 C 0.502 3.498 13 O -0.561 6.561 14 N -0.580 5.580 15 C 0.117 3.883 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.554 4.554 20 H 0.072 0.928 21 C 0.026 3.974 22 N -0.917 5.917 23 Si 0.966 3.034 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.103 3.897 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.420 0.580 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.376 0.624 44 H 0.271 0.729 45 H 0.055 0.945 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 0.211 23.544 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 O -0.150 6.150 4 N -0.251 5.251 5 C -0.058 4.058 6 C 0.310 3.690 7 O -0.422 6.422 8 C -0.020 4.020 9 N -0.346 5.346 10 C 0.306 3.694 11 O -0.394 6.394 12 C 0.285 3.715 13 O -0.442 6.442 14 N -0.312 5.312 15 C -0.004 4.004 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.396 6.396 19 C -0.592 4.592 20 H 0.090 0.910 21 C -0.175 4.175 22 N -0.556 5.556 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.019 4.019 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.259 0.741 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.568 0.398 23.767 26.889 hybrid contribution 1.795 -0.070 -0.877 2.000 sum -10.773 0.328 22.890 25.301 Atomic orbital electron populations 1.21755 0.90476 1.04339 1.03693 1.23403 0.97292 0.83580 1.02329 1.90706 0.99854 1.27486 1.96922 1.49790 0.96378 1.72274 1.06670 1.22160 0.96671 1.04198 0.82726 1.20579 0.87076 0.75738 0.85598 1.90802 1.14243 1.50986 1.86199 1.21263 0.91619 1.06897 0.82234 1.45435 1.12825 1.72531 1.03768 1.19647 0.87999 0.77950 0.83785 1.90727 1.15992 1.48082 1.84616 1.20084 0.88322 0.79348 0.83722 1.90728 1.17614 1.51400 1.84410 1.48676 1.11029 1.66818 1.04664 1.22226 0.80121 1.02671 0.95421 1.22738 0.96950 1.02438 0.93133 1.19872 0.91193 0.78631 0.91068 1.86098 1.36226 1.23266 1.94058 1.21781 0.98873 1.36611 1.01910 0.91002 1.25836 0.96169 0.94217 1.01259 1.69763 1.06870 1.40159 1.38787 0.85426 0.78048 0.77979 0.79400 1.20187 1.21028 1.18995 1.23125 0.95169 1.00377 0.83247 0.90938 0.91700 0.88596 0.92217 0.90652 0.90564 0.87647 0.89749 0.85940 0.86454 0.74098 0.90929 0.89364 0.88817 0.89482 0.77437 0.91999 0.92655 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 10.28 71.98 0.74 -0.17 16 2 C 0.01 0.10 7.09 71.98 0.51 0.61 16 3 O -0.14 -1.94 10.48 -38.80 -0.41 -2.35 16 4 N -0.47 -7.42 3.36 -484.53 -1.63 -9.05 16 5 C 0.08 0.87 10.82 127.77 1.38 2.25 16 6 C 0.52 10.93 7.82 87.66 0.69 11.61 16 7 O -0.54 -14.90 15.25 -3.05 -0.05 -14.94 16 8 C 0.11 2.18 5.46 85.63 0.47 2.65 16 9 N -0.69 -19.33 5.52 -468.14 -2.58 -21.92 16 10 C 0.53 17.63 7.86 87.27 0.69 18.31 16 11 O -0.52 -17.33 14.12 -3.25 -0.05 -17.38 16 12 C 0.50 20.76 7.91 87.27 0.69 21.45 16 13 O -0.56 -26.14 16.73 -3.24 -0.05 -26.19 16 14 N -0.58 -24.78 3.33 -813.24 -2.70 -27.48 16 15 C 0.12 4.33 5.49 86.75 0.48 4.81 16 16 C -0.11 -4.50 6.13 31.80 0.19 -4.30 16 17 C 0.23 11.29 0.88 -10.14 -0.01 11.29 16 18 O -0.59 -30.45 13.17 -148.98 -1.96 -32.41 16 19 C -0.55 -28.46 8.26 25.60 0.21 -28.25 16 20 H 0.07 3.56 7.78 -2.91 -0.02 3.54 16 21 C 0.03 1.35 5.29 84.66 0.45 1.79 16 22 N -0.92 -49.38 10.69 21.45 0.23 -49.15 16 23 Si 0.97 41.37 29.54 68.60 2.03 43.39 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 C 0.10 5.03 5.50 86.86 0.48 5.51 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.58 7.13 -2.39 -0.02 0.56 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 1.05 7.42 -2.39 -0.02 1.03 16 36 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.12 2.07 7.13 -2.39 -0.02 2.06 16 38 H 0.42 12.71 6.91 -92.71 -0.64 12.07 16 39 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 40 H 0.09 2.87 7.70 -2.39 -0.02 2.85 16 41 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 42 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 43 H 0.38 20.32 7.26 -74.06 -0.54 19.78 16 44 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 45 H 0.05 3.06 7.47 -2.39 -0.02 3.04 16 46 H 0.06 2.92 8.03 -2.39 -0.02 2.90 16 Total: -1.00 -66.80 388.17 -0.36 -67.16 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.15 Total: 42.75 kcal Atomic # 6 Polarization: 40.61 SS G_CDS: 6.96 Total: 47.57 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -6.69 Total: -107.60 kcal Atomic # 8 Polarization: -90.76 SS G_CDS: -2.52 Total: -93.27 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -66.80 -0.36 -67.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329862727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.454 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds