Wall clock time and date at job start Wed Apr 1 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36728 * 127.13977 * 2 1 4 4 C 1.50708 * 126.35084 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46890 * 89.99785 * 4 3 2 6 6 C 1.50707 * 109.47304 * 180.02562 * 5 4 3 7 7 H 1.08005 * 119.99184 * 359.72493 * 6 5 4 8 8 C 1.37877 * 120.00372 * 180.02562 * 6 5 4 9 9 N 1.31506 * 119.99957 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99741 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47048 * 90.00073 * 10 8 6 12 12 H 1.48504 * 109.46594 * 209.99767 * 10 8 6 13 13 H 1.48502 * 109.47005 * 329.99671 * 10 8 6 14 14 N 1.30296 * 107.30782 * 180.24402 * 3 2 1 15 15 N 1.28528 * 110.05059 * 359.55558 * 14 3 2 16 16 C 1.31222 * 109.85806 * 0.45499 * 15 14 3 17 17 N 1.38581 * 126.47240 * 179.68644 * 16 15 14 18 18 C 1.46908 * 110.99582 * 62.19869 * 17 16 15 19 19 C 1.53241 * 109.33763 * 172.74694 * 18 17 16 20 20 N 1.47074 * 108.52180 * 53.82992 * 19 18 17 21 21 S 1.65601 * 120.88117 * 128.79555 * 20 19 18 22 22 C 1.81400 * 104.44721 * 270.01980 * 21 20 19 23 23 O 1.42099 * 104.27873 * 26.08979 * 21 20 19 24 24 O 1.42100 * 104.27934 * 153.94571 * 21 20 19 25 25 C 1.47086 * 118.23803 * 308.81354 * 20 19 18 26 26 C 1.46899 * 111.00455 * 297.89894 * 17 16 15 27 27 H 1.09003 * 109.47063 * 85.21162 * 1 2 3 28 28 H 1.09002 * 109.47355 * 205.22019 * 1 2 3 29 29 H 1.09002 * 109.46967 * 325.21834 * 1 2 3 30 30 H 1.09008 * 109.46454 * 330.00243 * 4 3 2 31 31 H 1.08996 * 109.47130 * 210.00012 * 4 3 2 32 32 H 1.09000 * 109.47386 * 60.00612 * 5 4 3 33 33 H 1.09000 * 109.47849 * 300.00272 * 5 4 3 34 34 H 0.96998 * 120.00035 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.49125 * 292.70145 * 18 17 16 36 36 H 1.08997 * 109.49314 * 52.78367 * 18 17 16 37 37 H 1.08997 * 109.62475 * 294.11934 * 19 18 17 38 38 H 1.08994 * 109.62463 * 173.54161 * 19 18 17 39 39 H 1.09000 * 109.47300 * 60.00062 * 22 21 20 40 40 H 1.09000 * 109.46963 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.46864 * 299.99706 * 22 21 20 42 42 H 1.09006 * 109.62493 * 291.47833 * 25 20 19 43 43 H 1.08996 * 109.78411 * 170.99686 * 25 20 19 44 44 H 1.09004 * 109.48916 * 307.21362 * 26 17 16 45 45 H 1.08997 * 109.49494 * 67.26307 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0899 0.0000 4 6 1.8623 2.5349 -0.0005 5 6 1.7168 3.0242 1.4417 6 6 1.2879 4.4689 1.4413 7 1 1.1388 4.9875 0.5057 8 6 1.0920 5.1303 2.6351 9 7 0.7172 6.3908 2.6346 10 14 1.3588 4.2357 4.2532 11 1 2.7715 4.3976 4.6812 12 1 0.4595 4.8061 5.2882 13 1 1.0573 2.7924 4.0763 14 7 3.5162 0.6479 -0.0053 15 7 3.5212 -0.6374 0.0007 16 6 2.2887 -1.0879 0.0005 17 7 1.8976 -2.4173 -0.0001 18 6 2.3627 -3.1034 1.2128 19 6 1.7605 -4.5117 1.2618 20 7 2.0747 -5.1983 -0.0003 21 16 2.7623 -6.7048 0.0000 22 6 4.5482 -6.3872 0.0018 23 8 2.3560 -7.2752 1.2364 24 8 2.3584 -7.2747 -1.2375 25 6 1.7625 -4.5112 -1.2628 26 6 2.3646 -3.1030 -1.2124 27 1 -0.3633 0.0858 -1.0241 28 1 -0.3634 -0.9297 0.4379 29 1 -0.3633 0.8441 0.5862 30 1 0.9058 2.6301 -0.5148 31 1 2.6125 3.1360 -0.5142 32 1 2.6732 2.9289 1.9560 33 1 0.9666 2.4231 1.9555 34 1 0.5797 6.8562 3.4745 35 1 3.4503 -3.1733 1.1968 36 1 2.0468 -2.5419 2.0920 37 1 0.6793 -4.4435 1.3822 38 1 2.1906 -5.0649 2.0966 39 1 4.8152 -5.8180 0.8922 40 1 5.0859 -7.3354 0.0017 41 1 4.8169 -5.8176 -0.8878 42 1 0.6815 -4.4431 -1.3849 43 1 2.1914 -5.0632 -2.0991 44 1 2.0502 -2.5412 -2.0920 45 1 3.4522 -3.1725 -1.1949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339916521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:42 Heat of formation + Delta-G solvation = 1.887026 kcal Electronic energy + Delta-G solvation = -28422.862118 eV Core-core repulsion = 24410.623731 eV Total energy + Delta-G solvation = -4012.238387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.03181 -40.09572 -38.25609 -37.05594 -36.44875 -36.07087 -35.33259 -33.71042 -32.32602 -30.63598 -30.29133 -28.65345 -27.62989 -26.89009 -24.95394 -23.46397 -22.86395 -21.67319 -21.38226 -19.81849 -19.11797 -18.90710 -17.91347 -17.61252 -17.33994 -17.09080 -16.97263 -16.37814 -15.93032 -15.75433 -15.64462 -15.33814 -15.08160 -14.74137 -14.50416 -14.28261 -14.17995 -14.00103 -13.72865 -13.69074 -13.58703 -13.32619 -13.20309 -13.02396 -12.99427 -12.74465 -12.52332 -12.36688 -12.24749 -12.20617 -12.05650 -11.85073 -11.79298 -11.57600 -11.42527 -11.06648 -10.78337 -10.31765 -10.01234 -9.78392 -8.30180 -6.34250 -0.74128 0.67778 1.22361 1.34117 1.36400 1.45588 1.58637 1.72181 2.33652 2.61002 2.91396 3.05384 3.11053 3.41475 3.47502 3.79631 3.88551 3.94861 4.03895 4.04475 4.15719 4.19334 4.26612 4.34869 4.35656 4.38858 4.52552 4.58792 4.65457 4.69364 4.70553 4.79888 4.90964 4.91656 4.99861 5.07594 5.11731 5.28115 5.41726 5.43362 5.49726 5.61149 5.63008 6.18064 6.24268 6.73278 7.30476 7.66336 8.85785 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.002350 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.074080 B =11914.511217 C =12296.409029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.463 5.463 3 C 0.200 3.800 4 C -0.011 4.011 5 C 0.005 3.995 6 C -0.527 4.527 7 H 0.047 0.953 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.941 3.059 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.252 1.252 14 N -0.330 5.330 15 N -0.341 5.341 16 C 0.338 3.662 17 N -0.452 5.452 18 C 0.049 3.951 19 C 0.135 3.865 20 N -1.004 6.004 21 S 2.622 3.378 22 C -0.659 4.659 23 O -0.989 6.989 24 O -0.987 6.987 25 C 0.134 3.866 26 C 0.051 3.949 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -29.030 -6.682 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.154 5.154 3 C -0.069 4.069 4 C -0.051 4.051 5 C -0.034 4.034 6 C -0.565 4.565 7 H 0.066 0.934 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.765 3.235 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.175 1.175 14 N -0.170 5.170 15 N -0.185 5.185 16 C -0.020 4.020 17 N -0.178 5.178 18 C -0.079 4.079 19 C 0.009 3.991 20 N -0.841 5.841 21 S 2.719 3.281 22 C -0.812 4.812 23 O -0.979 6.979 24 O -0.978 6.978 25 C 0.008 3.992 26 C -0.077 4.077 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.026 0.974 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.109 0.891 43 H 0.133 0.867 44 H 0.109 0.891 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.879 -29.767 -6.591 30.546 hybrid contribution 0.147 0.975 0.828 1.287 sum 2.026 -28.793 -5.762 29.433 Atomic orbital electron populations 1.22367 0.72775 1.06255 1.05532 1.46414 1.10305 1.05160 1.53557 1.25256 0.86645 0.92702 1.02271 1.19962 1.02564 0.83141 0.99428 1.19374 0.96114 0.94845 0.93023 1.21314 1.45632 0.95868 0.93648 0.93446 1.25824 0.94335 0.95349 1.02907 1.70025 1.48706 1.11549 1.28147 0.85802 0.78381 0.79935 0.79333 1.20043 1.20621 1.17542 1.73973 1.19002 1.03333 1.20705 1.74416 1.18856 1.03729 1.21540 1.22484 0.85574 0.89094 1.04810 1.58683 1.59361 0.94229 1.05561 1.22657 0.99349 0.95251 0.90675 1.21560 1.02506 0.89835 0.85165 1.57762 1.76894 1.37104 1.12373 1.04429 0.78471 0.72490 0.72737 1.30447 1.24020 1.13510 1.13263 1.93570 1.81821 1.76139 1.46404 1.93569 1.81866 1.76108 1.46218 1.21586 1.02594 0.89925 0.85073 1.22654 0.99288 0.95173 0.90589 0.88130 0.86778 0.89190 0.88561 0.89462 0.97383 0.95965 0.92389 0.92581 0.89681 0.89161 0.86907 0.84054 0.83778 0.83884 0.89147 0.86698 0.89112 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.88 127.77 1.39 2.73 16 2 N -0.46 -12.70 3.21 -538.16 -1.73 -14.43 16 3 C 0.20 6.93 7.32 137.64 1.01 7.94 16 4 C -0.01 -0.41 5.45 29.85 0.16 -0.25 16 5 C 0.01 0.23 4.02 29.85 0.12 0.35 16 6 C -0.53 -28.62 9.66 25.60 0.25 -28.37 16 7 H 0.05 2.78 7.99 -2.91 -0.02 2.75 16 8 C 0.01 0.77 5.47 84.66 0.46 1.23 16 9 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 10 Si 0.94 43.41 27.47 68.60 1.88 45.29 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.25 -10.81 6.54 99.48 0.65 -10.15 16 14 N -0.33 -12.76 12.18 -49.54 -0.60 -13.37 16 15 N -0.34 -11.56 12.19 -58.00 -0.71 -12.27 16 16 C 0.34 9.03 6.40 260.11 1.66 10.70 16 17 N -0.45 -8.25 4.62 -705.09 -3.26 -11.51 16 18 C 0.05 0.77 5.54 86.38 0.48 1.24 16 19 C 0.13 1.50 6.47 86.35 0.56 2.05 16 20 N -1.00 -11.04 3.26 -512.18 -1.67 -12.71 16 21 S 2.62 31.27 6.06 -56.49 -0.34 30.93 16 22 C -0.66 -3.32 10.99 113.37 1.25 -2.08 16 23 O -0.99 -18.54 16.79 -127.65 -2.14 -20.69 16 24 O -0.99 -18.02 16.79 -127.65 -2.14 -20.16 16 25 C 0.13 1.35 6.46 86.35 0.56 1.91 16 26 C 0.05 0.73 5.54 86.38 0.48 1.21 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.11 1.65 8.12 -2.39 -0.02 1.63 16 29 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 30 H 0.10 3.11 7.98 -2.38 -0.02 3.09 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 33 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 1.00 7.19 -2.39 -0.02 0.98 16 39 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.12 0.86 7.20 -2.39 -0.02 0.84 16 44 H 0.09 1.28 8.09 -2.38 -0.02 1.26 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -81.09 380.55 -1.11 -82.19 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.93 Total: 4.89 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 8.37 Total: -1.34 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -7.67 Total: -121.12 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -4.29 Total: -40.85 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Atomic # 16 Polarization: 31.27 SS G_CDS: -0.34 Total: 30.93 kcal Total: -81.09 -1.11 -82.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339916521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.081 kcal (2) G-P(sol) polarization free energy of solvation -81.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds