Wall clock time and date at job start Wed Apr 1 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00429 * 2 1 4 4 H 1.48494 * 109.47371 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.46748 * 30.00389 * 3 2 1 6 6 H 1.48497 * 109.46783 * 149.99996 * 3 2 1 7 7 C 1.37878 * 119.99159 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99219 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00636 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47434 * 180.02562 * 9 7 2 11 11 C 1.46510 * 119.99428 * 274.99819 * 10 9 7 12 12 C 1.52998 * 109.46951 * 274.99942 * 11 10 9 13 13 C 1.52999 * 117.49586 * 243.62351 * 12 11 10 14 14 C 1.53001 * 117.49601 * 175.00114 * 12 11 10 15 15 S 1.65590 * 120.00719 * 94.99602 * 10 9 7 16 16 O 1.42102 * 104.27840 * 333.93215 * 15 10 9 17 17 O 1.42101 * 104.28143 * 206.07163 * 15 10 9 18 18 C 1.81401 * 104.44972 * 90.00058 * 15 10 9 19 19 C 1.53001 * 109.47512 * 180.02562 * 18 15 10 20 20 H 1.09002 * 109.94151 * 306.01468 * 19 18 15 21 21 C 1.54166 * 109.86139 * 185.00071 * 19 18 15 22 22 C 1.55000 * 104.26861 * 238.76499 * 21 19 18 23 23 C 1.53896 * 101.94971 * 340.17838 * 22 21 19 24 24 C 1.52645 * 115.53876 * 266.04505 * 23 22 21 25 25 C 1.53994 * 86.73472 * 217.56540 * 24 23 22 26 26 C 1.52644 * 115.55763 * 165.02739 * 23 22 21 27 27 O 1.43196 * 105.06428 * 35.49648 * 23 22 21 28 28 H 0.97006 * 119.99576 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47239 * 59.99734 * 9 7 2 30 30 H 1.09004 * 109.46625 * 300.00176 * 9 7 2 31 31 H 1.08999 * 109.47297 * 34.99965 * 11 10 9 32 32 H 1.09002 * 109.46915 * 154.99668 * 11 10 9 33 33 H 1.08998 * 115.55268 * 29.32817 * 12 11 10 34 34 H 1.08994 * 117.50380 * 0.02562 * 13 12 11 35 35 H 1.08998 * 117.49671 * 145.02487 * 13 12 11 36 36 H 1.09001 * 117.49346 * 214.97617 * 14 12 11 37 37 H 1.08992 * 117.50003 * 359.97438 * 14 12 11 38 38 H 1.08998 * 109.47258 * 60.00333 * 18 15 10 39 39 H 1.09002 * 109.46927 * 300.00147 * 18 15 10 40 40 H 1.09000 * 110.47344 * 120.06267 * 21 19 18 41 41 H 1.09003 * 110.57720 * 357.51456 * 21 19 18 42 42 H 1.09002 * 110.94333 * 98.35447 * 22 21 19 43 43 H 1.08997 * 110.93889 * 222.00955 * 22 21 19 44 44 H 1.08998 * 113.67649 * 332.02630 * 24 23 22 45 45 H 1.09004 * 113.67236 * 103.10679 * 24 23 22 46 46 H 1.08993 * 113.58223 * 269.97952 * 25 24 23 47 47 H 1.08997 * 113.57566 * 139.18350 * 25 24 23 48 48 H 1.08996 * 113.66459 * 256.87173 * 26 23 22 49 49 H 1.08992 * 113.66915 * 27.95242 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2027 -3.6128 -0.0005 11 6 2.7627 -4.0977 -1.2646 12 6 1.8028 -5.1103 -1.8924 13 6 2.2991 -6.5487 -2.0525 14 6 2.1530 -5.6486 -3.2811 15 16 2.6459 -4.3234 1.4280 16 8 2.4610 -3.3028 2.3993 17 8 3.9350 -4.8613 1.1668 18 6 1.4368 -5.6547 1.6655 19 6 1.7429 -6.3952 2.9689 20 1 2.7797 -6.7314 2.9709 21 6 0.7996 -7.6055 3.1177 22 6 0.0541 -7.3471 4.4518 23 6 0.9861 -6.3395 5.1478 24 6 2.0114 -6.9433 6.1040 25 6 1.7675 -5.7154 7.0008 26 6 0.3829 -5.5974 6.3374 27 8 1.5088 -5.5253 4.0921 28 1 -0.4850 0.8401 0.0004 29 1 0.6238 -2.5567 -0.8903 30 1 0.6245 -2.5570 0.8897 31 1 2.9020 -3.2584 -1.9460 32 1 3.7237 -4.5763 -1.0764 33 1 0.7478 -4.9645 -1.6604 34 1 3.3091 -6.7737 -1.7103 35 1 1.5705 -7.3495 -1.9259 36 1 1.3282 -5.8572 -3.9626 37 1 3.0668 -5.2810 -3.7476 38 1 1.4947 -6.3515 0.8293 39 1 0.4342 -5.2302 1.7160 40 1 1.3728 -8.5309 3.1742 41 1 0.0938 -7.6454 2.2880 42 1 -0.9276 -6.9092 4.2710 43 1 -0.0320 -8.2646 5.0339 44 1 1.6909 -7.8835 6.5527 45 1 3.0194 -6.9909 5.6918 46 1 2.4289 -4.8773 6.7818 47 1 1.7230 -5.9537 8.0634 48 1 0.0921 -4.5715 6.1113 49 1 -0.3981 -6.1570 6.8520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363928646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:50 Heat of formation + Delta-G solvation = -90.307609 kcal Electronic energy + Delta-G solvation = -29804.523186 eV Core-core repulsion = 25859.534532 eV Total energy + Delta-G solvation = -3944.988655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58397 -38.89344 -38.06111 -37.60662 -36.89411 -36.35672 -34.37950 -33.53574 -31.79037 -29.63858 -27.21063 -26.92115 -26.30171 -24.41871 -23.44713 -23.13742 -22.29412 -21.42124 -20.25549 -19.79880 -18.75039 -18.50392 -17.77477 -17.37283 -17.12186 -16.81896 -16.41465 -16.16597 -15.95987 -15.79019 -15.37588 -15.08962 -14.66937 -14.42070 -13.97941 -13.84726 -13.70319 -13.62975 -13.47339 -13.20414 -13.15675 -13.08889 -13.02217 -12.89862 -12.81956 -12.66406 -12.52512 -12.37811 -12.25904 -12.05436 -11.98818 -11.80829 -11.77611 -11.48609 -11.36171 -11.18131 -11.06570 -10.75320 -10.58154 -10.56864 -9.72433 -8.20408 -6.30824 -0.64618 1.35554 1.38494 1.49154 1.81569 2.40365 2.51674 2.95165 2.95367 3.10181 3.26314 3.34520 3.54260 3.57692 3.78088 3.84646 3.88861 3.91694 3.94825 4.05350 4.09370 4.15530 4.26357 4.35419 4.44778 4.47568 4.54191 4.68224 4.77154 4.81896 4.85486 4.90652 4.92298 5.00010 5.01766 5.02199 5.09558 5.10973 5.16597 5.19121 5.25166 5.35213 5.36361 5.42240 5.49235 5.70986 5.94691 5.99488 6.13238 6.76069 7.36924 8.87205 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009746 B = 0.004330 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.277425 B = 6464.269571 C = 8430.554278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.045 0.955 9 C 0.274 3.726 10 N -0.989 5.989 11 C 0.146 3.854 12 C -0.195 4.195 13 C -0.175 4.175 14 C -0.164 4.164 15 S 2.596 3.404 16 O -0.986 6.986 17 O -0.995 6.995 18 C -0.608 4.608 19 C 0.074 3.926 20 H 0.083 0.917 21 C -0.134 4.134 22 C -0.134 4.134 23 C 0.058 3.942 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.132 4.132 27 O -0.381 6.381 28 H 0.267 0.733 29 H 0.032 0.968 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -22.407 5.008 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.064 0.936 9 C 0.151 3.849 10 N -0.826 5.826 11 C 0.020 3.980 12 C -0.215 4.215 13 C -0.212 4.212 14 C -0.201 4.201 15 S 2.694 3.306 16 O -0.976 6.976 17 O -0.986 6.986 18 C -0.741 4.741 19 C 0.015 3.985 20 H 0.101 0.899 21 C -0.173 4.173 22 C -0.171 4.171 23 C 0.019 3.981 24 C -0.184 4.184 25 C -0.180 4.180 26 C -0.169 4.169 27 O -0.301 6.301 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.195 0.805 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.143 0.857 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.072 0.928 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.697 -21.741 5.527 22.443 hybrid contribution -0.082 1.322 -0.338 1.367 sum -0.779 -20.419 5.188 21.082 Atomic orbital electron populations 1.70001 1.07041 1.27982 1.51358 1.25697 0.95822 1.02456 0.94658 0.85630 0.78488 0.79264 0.78794 1.18794 1.20156 1.20388 1.21797 0.93235 0.92665 1.50688 0.93645 1.18564 0.87119 0.82590 0.96639 1.57280 1.59453 1.44857 1.20979 1.20908 0.95370 0.96873 0.84807 1.22832 1.00410 0.96048 1.02241 1.23268 1.03241 0.92517 1.02184 1.22985 1.03883 1.02945 0.90314 1.05086 0.76221 0.76176 0.73162 1.93564 1.87077 1.55667 1.61286 1.93451 1.38250 1.81986 1.84877 1.30705 1.18598 1.18310 1.06449 1.22660 1.01061 0.91204 0.83563 0.89947 1.23000 0.98271 0.96485 0.99517 1.22966 0.98499 0.99917 0.95729 1.23090 0.94929 0.91926 0.88180 1.23350 0.99171 0.99236 0.96659 1.22865 0.96674 0.98130 1.00345 1.23001 0.98266 1.00940 0.94678 1.88883 1.85024 1.33206 1.23001 0.92410 0.95043 0.96761 0.90995 0.89712 0.87607 0.88337 0.86594 0.87370 0.88382 0.80484 0.83877 0.87446 0.88412 0.90319 0.86708 0.85729 0.91883 0.92521 0.88891 0.92800 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.95 46.70 29.54 68.60 2.03 48.72 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.54 -32.52 9.38 25.60 0.24 -32.28 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 9 C 0.27 14.49 5.01 85.63 0.43 14.92 16 10 N -0.99 -42.92 2.70 -519.83 -1.40 -44.32 16 11 C 0.15 5.26 5.94 86.38 0.51 5.78 16 12 C -0.20 -5.34 6.01 -10.79 -0.06 -5.41 16 13 C -0.18 -3.53 10.18 30.60 0.31 -3.22 16 14 C -0.16 -3.49 10.25 30.60 0.31 -3.18 16 15 S 2.60 109.23 5.26 -56.49 -0.30 108.94 16 16 O -0.99 -52.87 16.62 -126.56 -2.10 -54.97 16 17 O -1.00 -43.12 16.53 -127.65 -2.11 -45.23 16 18 C -0.61 -17.31 5.65 71.98 0.41 -16.90 16 19 C 0.07 1.95 3.42 30.99 0.11 2.06 16 20 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 21 C -0.13 -2.19 6.65 31.67 0.21 -1.97 16 22 C -0.13 -2.13 6.48 31.58 0.20 -1.93 16 23 C 0.06 1.33 1.12 -10.74 -0.01 1.31 16 24 C -0.15 -2.71 7.63 30.81 0.24 -2.47 16 25 C -0.14 -2.98 8.09 31.25 0.25 -2.73 16 26 C -0.13 -2.82 7.65 30.81 0.24 -2.59 16 27 O -0.38 -12.60 10.49 -148.97 -1.56 -14.16 16 28 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 29 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 30 H 0.01 0.82 7.61 -2.38 -0.02 0.80 16 31 H 0.07 2.78 8.11 -2.39 -0.02 2.76 16 32 H 0.08 2.93 6.55 -2.39 -0.02 2.92 16 33 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.18 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.34 7.70 -2.39 -0.02 1.32 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.11 1.08 7.96 -2.39 -0.02 1.06 16 44 H 0.12 1.41 8.01 -2.39 -0.02 1.39 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -81.21 406.84 -0.41 -81.62 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.91 Total: 22.33 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 3.84 Total: -47.38 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -1.12 Total: -99.87 kcal Atomic # 8 Polarization: -108.58 SS G_CDS: -5.78 Total: -114.36 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 109.23 SS G_CDS: -0.30 Total: 108.94 kcal Total: -81.21 -0.41 -81.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363928646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.686 kcal (2) G-P(sol) polarization free energy of solvation -81.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds