Wall clock time and date at job start Wed Apr 1 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30835 * 125.95923 * 2 1 4 4 C 1.33241 * 109.82581 * 180.12374 * 3 2 1 5 5 C 1.50708 * 125.52335 * 179.85632 * 4 3 2 6 6 H 1.08992 * 110.88499 * 3.59294 * 5 4 3 7 7 C 1.55152 * 111.00334 * 127.52277 * 5 4 3 8 8 C 1.54334 * 103.02267 * 153.38053 * 7 5 4 9 9 N 1.47021 * 107.26315 * 338.13629 * 8 7 5 10 10 S 1.65601 * 125.64914 * 178.84818 * 9 8 7 11 11 O 1.42101 * 106.40170 * 156.15511 * 10 9 8 12 12 O 1.42095 * 106.40365 * 23.23464 * 10 9 8 13 13 N 1.65602 * 107.22161 * 269.69221 * 10 9 8 14 14 C 1.46496 * 119.99751 * 89.99699 * 13 10 9 15 15 C 1.46504 * 120.00020 * 270.00391 * 13 10 9 16 16 H 1.08998 * 109.47061 * 359.97438 * 15 13 10 17 17 C 1.53004 * 109.46910 * 239.99647 * 15 13 10 18 18 C 1.50694 * 109.47191 * 119.99570 * 15 13 10 19 19 H 1.08002 * 120.00045 * 34.95500 * 18 15 13 20 20 C 1.37873 * 120.00185 * 214.94875 * 18 15 13 21 21 N 1.31518 * 120.00154 * 184.88149 * 20 18 15 22 22 Si 1.86799 * 119.99847 * 4.89169 * 20 18 15 23 23 H 1.48500 * 109.47284 * 84.81997 * 22 20 18 24 24 H 1.48505 * 109.47186 * 204.82148 * 22 20 18 25 25 H 1.48502 * 109.47149 * 324.81838 * 22 20 18 26 26 C 1.47423 * 108.70316 * 358.58676 * 9 8 7 27 27 N 1.30710 * 108.95208 * 359.58866 * 4 3 2 28 28 N 1.34428 * 125.96557 * 179.66705 * 2 1 3 29 29 H 0.96999 * 126.81957 * 0.07219 * 28 2 1 30 30 H 1.09001 * 109.46696 * 270.30361 * 1 2 3 31 31 H 1.08996 * 109.47113 * 30.30314 * 1 2 3 32 32 H 1.08998 * 109.47038 * 150.30999 * 1 2 3 33 33 H 1.09003 * 110.71824 * 271.93447 * 7 5 4 34 34 H 1.08996 * 110.72605 * 35.03050 * 7 5 4 35 35 H 1.08994 * 109.99489 * 218.66280 * 8 7 5 36 36 H 1.09002 * 109.78103 * 97.49035 * 8 7 5 37 37 H 1.09006 * 109.47172 * 90.00497 * 14 13 10 38 38 H 1.09004 * 109.47172 * 210.00106 * 14 13 10 39 39 H 1.09001 * 109.47560 * 330.00145 * 14 13 10 40 40 H 1.08996 * 109.47272 * 174.97482 * 17 15 13 41 41 H 1.08996 * 109.46960 * 294.97971 * 17 15 13 42 42 H 1.09005 * 109.46884 * 54.97053 * 17 15 13 43 43 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 44 44 H 1.09005 * 110.37028 * 143.19262 * 26 9 8 45 45 H 1.09002 * 110.36725 * 265.51793 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6237 -0.0067 6 1 4.4116 2.6620 0.0568 7 6 5.7235 1.2781 1.1401 8 6 7.0763 1.7893 0.6012 9 7 6.9624 1.8648 -0.8626 10 16 8.1462 2.3851 -1.8973 11 8 7.8653 1.7935 -3.1584 12 8 9.3804 2.2113 -1.2149 13 7 7.9450 4.0174 -2.0914 14 6 8.6250 4.9514 -1.1906 15 6 7.0869 4.5273 -3.1637 16 1 6.6711 3.6906 -3.7252 17 6 7.9129 5.4100 -4.1016 18 6 5.9661 5.3390 -2.5672 19 1 6.1416 5.9341 -1.6832 20 6 4.7168 5.3221 -3.1500 21 7 3.7649 6.1033 -2.6879 22 14 4.3759 4.1895 -4.5958 23 1 4.0071 2.8418 -4.0927 24 1 3.2572 4.7398 -5.4028 25 1 5.5922 4.0864 -5.4414 26 6 5.6221 1.3947 -1.2574 27 7 3.6195 -0.6167 0.0044 28 7 2.2965 -1.0880 0.0063 29 1 2.0094 -2.0145 0.0107 30 1 -0.3633 0.0054 1.0277 31 1 -0.3633 0.8872 -0.5185 32 1 -0.3633 -0.8927 -0.5090 33 1 5.4483 1.8009 2.0561 34 1 5.7582 0.2017 1.3077 35 1 7.8724 1.0974 0.8759 36 1 7.2854 2.7787 1.0082 37 1 9.6015 5.2072 -1.6021 38 1 8.0265 5.8563 -1.0862 39 1 8.7532 4.4857 -0.2135 40 1 7.2977 5.7168 -4.9474 41 1 8.2549 6.2930 -3.5619 42 1 8.7746 4.8490 -4.4635 43 1 2.8858 6.0911 -3.0978 44 1 5.2479 1.9781 -2.0987 45 1 5.6515 0.3353 -1.5125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363942421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:53 Heat of formation + Delta-G solvation = 16.521509 kcal Electronic energy + Delta-G solvation = -29763.204836 eV Core-core repulsion = 25751.601047 eV Total energy + Delta-G solvation = -4011.603789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21073 -38.27506 -36.75320 -36.25065 -35.29121 -33.44121 -32.45773 -32.42682 -30.58107 -29.89795 -29.02862 -27.82069 -25.64596 -25.14075 -23.51891 -22.00777 -21.06902 -20.56392 -19.72258 -18.45273 -18.06316 -17.47769 -17.10827 -16.57260 -15.84436 -15.72725 -15.23764 -14.58796 -14.44940 -13.83385 -13.74353 -13.35287 -13.28954 -13.24249 -12.99362 -12.97395 -12.79326 -12.50170 -12.49233 -11.95118 -11.94363 -11.75649 -11.65039 -11.54898 -11.44498 -11.38148 -11.22020 -11.06292 -10.77325 -10.68455 -10.62744 -10.35587 -10.04363 -9.99094 -9.80520 -9.45693 -9.37195 -8.73843 -8.56251 -8.01937 -6.18441 -4.18427 1.13682 1.50498 2.53407 2.82027 3.23583 3.33616 3.40349 3.41193 3.88148 4.07929 4.33490 4.42664 4.62140 4.67122 4.84157 5.02670 5.12469 5.15404 5.16467 5.30540 5.54654 5.56313 5.61121 5.64415 5.78382 5.88682 6.02760 6.11523 6.14095 6.18281 6.20451 6.27833 6.35879 6.43008 6.47454 6.50684 6.58973 6.68820 6.72086 6.95451 7.01914 7.22692 7.48341 7.69827 8.08512 8.42942 8.86727 9.43379 10.93372 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.005124 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.173987 B = 5462.791109 C = 7079.849015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.279 3.721 3 N -0.528 5.528 4 C 0.251 3.749 5 C -0.010 4.010 6 H 0.123 0.877 7 C -0.115 4.115 8 C 0.127 3.873 9 N -1.015 6.015 10 S 2.789 3.211 11 O -0.981 6.981 12 O -0.990 6.990 13 N -0.985 5.985 14 C 0.106 3.894 15 C 0.232 3.768 16 H 0.054 0.946 17 C -0.143 4.143 18 C -0.518 4.518 19 H 0.083 0.917 20 C 0.083 3.917 21 N -0.884 5.884 22 Si 0.853 3.147 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.260 1.260 26 C 0.140 3.860 27 N -0.312 5.312 28 N -0.487 5.487 29 H 0.438 0.562 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.267 0.733 44 H 0.084 0.916 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -11.620 8.010 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 N -0.257 5.257 4 C -0.032 4.032 5 C -0.032 4.032 6 H 0.141 0.859 7 C -0.155 4.155 8 C 0.001 3.999 9 N -0.853 5.853 10 S 2.800 3.200 11 O -0.966 6.966 12 O -0.975 6.975 13 N -0.827 5.827 14 C -0.040 4.040 15 C 0.129 3.871 16 H 0.072 0.928 17 C -0.203 4.203 18 C -0.558 4.558 19 H 0.101 0.899 20 C -0.122 4.122 21 N -0.521 5.521 22 Si 0.679 3.321 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.184 1.184 26 C 0.013 3.987 27 N -0.141 5.141 28 N -0.206 5.206 29 H 0.283 0.717 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.542 -12.102 7.532 14.479 hybrid contribution -1.165 -0.958 -0.635 1.636 sum -3.707 -13.060 6.898 15.228 Atomic orbital electron populations 1.20388 0.83706 1.05062 1.04457 1.24446 0.96675 0.82856 0.96009 1.70449 1.01439 1.29304 1.24469 1.23872 0.92848 0.89695 0.96827 1.20773 0.88067 0.98107 0.96292 0.85882 1.22683 0.93110 1.02166 0.97503 1.21617 0.97534 1.01184 0.79558 1.59096 1.28336 1.80441 1.17427 1.01717 0.72385 0.73428 0.72441 1.93562 1.85534 1.76670 1.40784 1.93534 1.41479 1.86440 1.76006 1.58007 1.60405 1.22709 1.41561 1.21209 0.96053 0.95298 0.91430 1.19114 0.88936 0.94657 0.84406 0.92801 1.22162 0.98603 1.00048 0.99468 1.21156 0.92785 1.27782 1.14071 0.89855 1.24913 0.95978 0.94981 0.96286 1.69866 1.03448 1.37442 1.41321 0.87242 0.78811 0.81988 0.84032 1.19523 1.20989 1.18403 1.21853 0.80690 0.99657 0.96525 1.77970 0.96364 1.12404 1.27320 1.47997 1.04435 1.09878 1.58258 0.71726 0.89053 0.88151 0.90015 0.89737 0.90171 0.91228 0.91308 0.93887 0.90030 0.92940 0.92724 0.92815 0.95412 0.92338 0.89752 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.51 36.01 0.38 -0.13 16 2 C 0.28 3.30 8.24 -155.69 -1.28 2.02 16 3 N -0.53 -8.56 11.19 -8.16 -0.09 -8.65 16 4 C 0.25 4.08 6.83 -156.85 -1.07 3.01 16 5 C -0.01 -0.16 3.58 -89.62 -0.32 -0.48 16 6 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 7 C -0.11 -1.51 6.41 -24.89 -0.16 -1.67 16 8 C 0.13 1.83 6.99 -3.06 -0.02 1.80 16 9 N -1.01 -18.23 3.75 -111.41 -0.42 -18.64 16 10 S 2.79 57.09 6.30 -107.50 -0.68 56.41 16 11 O -0.98 -22.77 16.29 -57.17 -0.93 -23.70 16 12 O -0.99 -20.64 16.79 -57.17 -0.96 -21.60 16 13 N -0.98 -20.36 3.12 -115.85 -0.36 -20.72 16 14 C 0.11 1.87 9.44 59.84 0.56 2.43 16 15 C 0.23 5.40 2.28 -69.08 -0.16 5.24 16 16 H 0.05 1.34 4.07 -51.93 -0.21 1.13 16 17 C -0.14 -3.02 9.10 37.16 0.34 -2.69 16 18 C -0.52 -13.37 8.72 -34.44 -0.30 -13.67 16 19 H 0.08 2.28 6.82 -52.49 -0.36 1.92 16 20 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 21 N -0.88 -25.31 13.96 55.43 0.77 -24.53 16 22 Si 0.85 20.99 26.99 -169.99 -4.59 16.41 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.26 -6.26 6.82 56.52 0.39 -5.87 16 26 C 0.14 2.55 6.44 -2.53 -0.02 2.53 16 27 N -0.31 -4.63 12.43 32.42 0.40 -4.22 16 28 N -0.49 -5.38 7.45 32.62 0.24 -5.14 16 29 H 0.44 2.97 8.96 -182.34 -1.63 1.33 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.01 7.79 -51.93 -0.40 0.61 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.47 6.56 -51.93 -0.34 1.13 16 39 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.06 7.84 -51.93 -0.41 0.66 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 45 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -34.84 378.97 -11.02 -45.86 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.98 Total: 2.27 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.15 Total: 0.55 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: 0.55 Total: -81.90 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.89 Total: -45.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.59 Total: 16.41 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.68 Total: 56.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.84 -11.02 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363942421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.380 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds