Wall clock time and date at job start Wed Apr 1 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47497 * 2 1 4 4 C 1.46503 * 120.00034 * 274.06219 * 3 2 1 5 5 C 1.50709 * 109.47102 * 280.93341 * 4 3 2 6 6 H 1.08004 * 119.99578 * 3.25588 * 5 4 3 7 7 C 1.37877 * 119.99565 * 183.25991 * 5 4 3 8 8 N 1.31509 * 120.00348 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99435 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47260 * 89.99974 * 9 7 5 11 11 H 1.48498 * 109.47021 * 210.00136 * 9 7 5 12 12 H 1.48507 * 109.46995 * 329.99619 * 9 7 5 13 13 S 1.65593 * 120.00111 * 94.06284 * 3 2 1 14 14 O 1.42104 * 106.40197 * 336.46818 * 13 3 2 15 15 O 1.42110 * 106.40387 * 203.54915 * 13 3 2 16 16 N 1.65602 * 107.22272 * 90.00718 * 13 3 2 17 17 C 1.46500 * 119.99801 * 65.59797 * 16 13 3 18 18 C 1.50699 * 109.47223 * 164.33434 * 17 16 13 19 19 C 1.35348 * 126.75352 * 94.97775 * 18 17 16 20 20 N 1.35313 * 106.17237 * 180.02562 * 19 18 17 21 21 C 1.46502 * 125.86726 * 180.02562 * 20 19 18 22 22 C 1.53778 * 113.61513 * 14.13770 * 21 20 19 23 23 C 1.53958 * 87.02183 * 220.05033 * 22 21 20 24 24 C 1.53780 * 87.10828 * 25.36326 * 23 22 21 25 25 N 1.28719 * 108.26608 * 0.02562 * 20 19 18 26 26 N 1.28637 * 110.17802 * 359.97438 * 25 20 19 27 27 H 1.08996 * 109.47746 * 185.05330 * 1 2 3 28 28 H 1.09005 * 109.47044 * 305.05102 * 1 2 3 29 29 H 1.09000 * 109.47032 * 65.04803 * 1 2 3 30 30 H 1.09001 * 109.46772 * 239.99514 * 2 1 3 31 31 H 1.09002 * 109.47449 * 120.00144 * 2 1 3 32 32 H 1.09001 * 109.46909 * 40.93001 * 4 3 2 33 33 H 1.09000 * 109.47241 * 160.93252 * 4 3 2 34 34 H 0.97002 * 119.99885 * 179.97438 * 8 7 5 35 35 H 0.96998 * 119.99988 * 245.60251 * 16 13 3 36 36 H 1.08999 * 109.47225 * 44.33092 * 17 16 13 37 37 H 1.09001 * 109.47018 * 284.33072 * 17 16 13 38 38 H 1.07994 * 126.91337 * 0.08921 * 19 18 17 39 39 H 1.08994 * 112.85222 * 145.33693 * 21 20 19 40 40 H 1.09007 * 113.61611 * 334.56625 * 22 21 20 41 41 H 1.08993 * 113.61800 * 105.46696 * 22 21 20 42 42 H 1.08994 * 113.53479 * 270.80907 * 23 22 21 43 43 H 1.09002 * 113.74064 * 139.94370 * 23 22 21 44 44 H 1.09001 * 113.61266 * 220.08968 * 24 23 22 45 45 H 1.08991 * 113.61751 * 89.19149 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1779 2.1017 -1.2656 5 6 3.4577 1.6680 -1.9328 6 1 4.0625 0.8918 -1.4876 7 6 3.8564 2.2622 -3.1113 8 7 3.1196 3.2071 -3.6535 9 14 5.4431 1.7251 -3.9379 10 1 5.1580 0.6159 -4.8831 11 1 6.0267 2.8709 -4.6808 12 1 6.4062 1.2617 -2.9067 13 16 2.3902 2.1279 1.4305 14 8 1.6494 1.4546 2.4390 15 8 2.2872 3.5251 1.1924 16 7 3.9879 1.8231 1.7419 17 6 5.0229 2.3680 0.8598 18 6 6.3619 2.2866 1.5464 19 6 7.2794 1.2999 1.4178 20 7 8.3179 1.6448 2.2137 21 6 9.5506 0.8749 2.3981 22 6 9.7511 -0.2285 1.3460 23 6 10.2686 -1.1162 2.4925 24 6 9.4252 -0.2482 3.4411 25 7 8.0367 2.7655 2.7809 26 7 6.8771 3.1750 2.4037 27 1 -0.3634 -1.0236 0.0905 28 1 -0.3633 0.5902 0.8413 29 1 -0.3633 0.4335 -0.9317 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3341 1.8796 -1.9189 33 1 2.2146 3.1736 -1.0712 34 1 3.4004 3.6254 -4.4824 35 1 4.2384 1.2838 2.5082 36 1 4.7945 3.4090 0.6313 37 1 5.0530 1.7913 -0.0646 38 1 7.1992 0.4158 0.8027 39 1 10.4272 1.5069 2.5404 40 1 8.8204 -0.5847 0.9040 41 1 10.5100 0.0109 0.6012 42 1 11.3422 -1.0294 2.6595 43 1 9.9319 -2.1512 2.4324 44 1 9.9216 -0.0245 4.3854 45 1 8.4055 -0.6096 3.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363993231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:14 Heat of formation + Delta-G solvation = 42.915093 kcal Electronic energy + Delta-G solvation = -28955.001198 eV Core-core repulsion = 24944.541921 eV Total energy + Delta-G solvation = -4010.459277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.27381 -39.24488 -36.62207 -36.04114 -35.25118 -35.13379 -32.98102 -32.73348 -30.91511 -29.92120 -26.72978 -26.53874 -26.33240 -25.55514 -23.15881 -22.30602 -21.69736 -21.24878 -19.96606 -18.83259 -17.97383 -17.06359 -16.79559 -16.49262 -16.44840 -15.90795 -15.51123 -15.09212 -14.88964 -14.47782 -13.93257 -13.76171 -13.56154 -13.24784 -13.06277 -12.99236 -12.89993 -12.59938 -12.06845 -12.03350 -12.00304 -11.77964 -11.67996 -11.40313 -11.32956 -11.28539 -11.24181 -11.11245 -11.08458 -10.97324 -10.65857 -10.51397 -10.39215 -10.03806 -9.98143 -9.81949 -9.19831 -8.97767 -8.54120 -8.05220 -6.14742 -4.21824 1.28796 1.61051 2.25588 2.59279 3.19590 3.25086 3.28840 3.66449 3.68798 3.86192 4.13809 4.19814 4.22706 4.30629 4.44787 4.77616 4.91741 5.01722 5.06500 5.16569 5.18933 5.25107 5.28813 5.33655 5.34991 5.44483 5.61238 5.71153 5.74141 5.78980 5.88142 6.10701 6.24777 6.28485 6.36581 6.44902 6.59500 6.69011 6.72416 7.30371 7.38464 7.46820 7.69080 7.82649 8.12708 8.59128 8.82238 9.43532 10.93082 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004216 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.747032 B = 6639.771714 C = 8137.673695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.542 4.542 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.787 3.213 14 O -0.999 6.999 15 O -0.977 6.977 16 N -1.125 6.125 17 C 0.202 3.798 18 C -0.019 4.019 19 C -0.035 4.035 20 N -0.286 5.286 21 C 0.115 3.885 22 C -0.145 4.145 23 C -0.135 4.135 24 C -0.143 4.143 25 N -0.091 5.091 26 N -0.254 5.254 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.191 0.809 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.018 -11.422 9.131 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.984 6.984 15 O -0.960 6.960 16 N -0.883 5.883 17 C 0.075 3.925 18 C -0.158 4.158 19 C -0.187 4.187 20 N -0.079 5.079 21 C 0.014 3.986 22 C -0.184 4.184 23 C -0.173 4.173 24 C -0.182 4.182 25 N -0.070 5.070 26 N -0.122 5.122 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.207 0.793 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.861 -9.516 10.310 18.372 hybrid contribution 1.125 -1.581 -1.309 2.341 sum 12.986 -11.097 9.001 19.308 Atomic orbital electron populations 1.22203 0.97038 1.01270 1.02373 1.20950 0.93572 0.82898 1.02058 1.57748 1.78678 1.23042 1.23890 1.19229 0.97164 0.92665 0.78961 1.21512 1.07434 1.21337 1.07801 0.91748 1.24947 0.96995 0.94745 0.97008 1.69925 1.37976 1.24714 1.19573 0.86645 0.83575 0.78275 0.79770 1.20674 1.21143 1.19781 1.01718 0.72475 0.73724 0.72639 1.93545 1.69657 1.76537 1.58627 1.93587 1.85780 1.31094 1.85553 1.55992 1.25087 1.68217 1.39034 1.19674 0.79645 1.01970 0.91210 1.22120 0.99261 0.93172 1.01233 1.23353 0.89367 1.04028 1.01925 1.47403 1.14797 1.16219 1.29494 1.23460 0.84468 0.90946 0.99763 1.23480 1.03456 0.94342 0.97113 1.22740 1.00322 0.99235 0.95037 1.23405 1.02161 0.94518 0.98094 1.78282 1.11818 0.97763 1.19135 1.75127 1.01505 1.23917 1.11613 0.92467 0.92660 0.92148 0.90090 0.92048 0.94699 0.92645 0.92498 0.76211 0.88540 0.87377 0.79253 0.84974 0.88316 0.89394 0.89122 0.89774 0.89719 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.20 6.01 -4.05 -0.02 2.17 16 3 N -0.99 -19.61 2.84 -115.66 -0.33 -19.93 16 4 C 0.24 5.71 5.48 -5.19 -0.03 5.68 16 5 C -0.54 -13.03 7.94 -34.44 -0.27 -13.30 16 6 H 0.06 1.44 6.74 -52.48 -0.35 1.09 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.88 -24.31 13.29 55.43 0.74 -23.58 16 9 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 S 2.79 55.28 6.11 -107.50 -0.66 54.62 16 14 O -1.00 -20.43 17.09 -57.17 -0.98 -21.41 16 15 O -0.98 -23.06 16.09 -57.17 -0.92 -23.98 16 16 N -1.13 -18.98 6.04 -11.66 -0.07 -19.05 16 17 C 0.20 3.58 6.72 -5.19 -0.03 3.54 16 18 C -0.02 -0.30 6.64 -82.78 -0.55 -0.85 16 19 C -0.04 -0.46 10.71 -17.05 -0.18 -0.64 16 20 N -0.29 -3.53 3.53 -53.98 -0.19 -3.72 16 21 C 0.12 0.90 4.95 -67.12 -0.33 0.57 16 22 C -0.15 -0.85 7.45 -25.83 -0.19 -1.04 16 23 C -0.14 -0.59 8.09 -25.83 -0.21 -0.80 16 24 C -0.14 -0.88 7.88 -25.92 -0.20 -1.08 16 25 N -0.09 -1.45 13.17 60.35 0.79 -0.66 16 26 N -0.25 -4.59 12.41 33.29 0.41 -4.18 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.91 8.11 -51.93 -0.42 0.48 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.32 8.05 -51.93 -0.42 0.91 16 31 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.46 6.83 -51.93 -0.35 1.11 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 35 H 0.41 5.89 8.65 -34.47 -0.30 5.59 16 36 H 0.10 1.92 7.72 -51.93 -0.40 1.52 16 37 H 0.11 1.93 5.58 -51.93 -0.29 1.64 16 38 H 0.19 1.86 6.74 -52.49 -0.35 1.51 16 39 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.60 6.33 -51.93 -0.33 0.27 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -33.19 382.98 -8.75 -41.95 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.56 Total: 6.19 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.75 Total: -6.40 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: 1.35 Total: -71.11 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.90 Total: -45.39 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: 55.28 SS G_CDS: -0.66 Total: 54.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.19 -8.75 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363993231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.862 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds