Wall clock time and date at job start Wed Apr 1 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47497 * 2 1 4 4 C 1.46503 * 120.00034 * 274.06219 * 3 2 1 5 5 C 1.50709 * 109.47102 * 280.93341 * 4 3 2 6 6 H 1.08004 * 119.99578 * 3.25588 * 5 4 3 7 7 C 1.37877 * 119.99565 * 183.25991 * 5 4 3 8 8 N 1.31509 * 120.00348 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99435 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47260 * 89.99974 * 9 7 5 11 11 H 1.48498 * 109.47021 * 210.00136 * 9 7 5 12 12 H 1.48507 * 109.46995 * 329.99619 * 9 7 5 13 13 S 1.65593 * 120.00111 * 94.06284 * 3 2 1 14 14 O 1.42104 * 106.40197 * 336.46818 * 13 3 2 15 15 O 1.42110 * 106.40387 * 203.54915 * 13 3 2 16 16 N 1.65602 * 107.22272 * 90.00718 * 13 3 2 17 17 C 1.46500 * 119.99801 * 65.59797 * 16 13 3 18 18 C 1.50699 * 109.47223 * 164.33434 * 17 16 13 19 19 C 1.35348 * 126.75352 * 94.97775 * 18 17 16 20 20 N 1.35313 * 106.17237 * 180.02562 * 19 18 17 21 21 C 1.46502 * 125.86726 * 180.02562 * 20 19 18 22 22 C 1.53778 * 113.61513 * 14.13770 * 21 20 19 23 23 C 1.53958 * 87.02183 * 220.05033 * 22 21 20 24 24 C 1.53780 * 87.10828 * 25.36326 * 23 22 21 25 25 N 1.28719 * 108.26608 * 0.02562 * 20 19 18 26 26 N 1.28637 * 110.17802 * 359.97438 * 25 20 19 27 27 H 1.08996 * 109.47746 * 185.05330 * 1 2 3 28 28 H 1.09005 * 109.47044 * 305.05102 * 1 2 3 29 29 H 1.09000 * 109.47032 * 65.04803 * 1 2 3 30 30 H 1.09001 * 109.46772 * 239.99514 * 2 1 3 31 31 H 1.09002 * 109.47449 * 120.00144 * 2 1 3 32 32 H 1.09001 * 109.46909 * 40.93001 * 4 3 2 33 33 H 1.09000 * 109.47241 * 160.93252 * 4 3 2 34 34 H 0.97002 * 119.99885 * 179.97438 * 8 7 5 35 35 H 0.96998 * 119.99988 * 245.60251 * 16 13 3 36 36 H 1.08999 * 109.47225 * 44.33092 * 17 16 13 37 37 H 1.09001 * 109.47018 * 284.33072 * 17 16 13 38 38 H 1.07994 * 126.91337 * 0.08921 * 19 18 17 39 39 H 1.08994 * 112.85222 * 145.33693 * 21 20 19 40 40 H 1.09007 * 113.61611 * 334.56625 * 22 21 20 41 41 H 1.08993 * 113.61800 * 105.46696 * 22 21 20 42 42 H 1.08994 * 113.53479 * 270.80907 * 23 22 21 43 43 H 1.09002 * 113.74064 * 139.94370 * 23 22 21 44 44 H 1.09001 * 113.61266 * 220.08968 * 24 23 22 45 45 H 1.08991 * 113.61751 * 89.19149 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1779 2.1017 -1.2656 5 6 3.4577 1.6680 -1.9328 6 1 4.0625 0.8918 -1.4876 7 6 3.8564 2.2622 -3.1113 8 7 3.1196 3.2071 -3.6535 9 14 5.4431 1.7251 -3.9379 10 1 5.1580 0.6159 -4.8831 11 1 6.0267 2.8709 -4.6808 12 1 6.4062 1.2617 -2.9067 13 16 2.3902 2.1279 1.4305 14 8 1.6494 1.4546 2.4390 15 8 2.2872 3.5251 1.1924 16 7 3.9879 1.8231 1.7419 17 6 5.0229 2.3680 0.8598 18 6 6.3619 2.2866 1.5464 19 6 7.2794 1.2999 1.4178 20 7 8.3179 1.6448 2.2137 21 6 9.5506 0.8749 2.3981 22 6 9.7511 -0.2285 1.3460 23 6 10.2686 -1.1162 2.4925 24 6 9.4252 -0.2482 3.4411 25 7 8.0367 2.7655 2.7809 26 7 6.8771 3.1750 2.4037 27 1 -0.3634 -1.0236 0.0905 28 1 -0.3633 0.5902 0.8413 29 1 -0.3633 0.4335 -0.9317 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3341 1.8796 -1.9189 33 1 2.2146 3.1736 -1.0712 34 1 3.4004 3.6254 -4.4824 35 1 4.2384 1.2838 2.5082 36 1 4.7945 3.4090 0.6313 37 1 5.0530 1.7913 -0.0646 38 1 7.1992 0.4158 0.8027 39 1 10.4272 1.5069 2.5404 40 1 8.8204 -0.5847 0.9040 41 1 10.5100 0.0109 0.6012 42 1 11.3422 -1.0294 2.6595 43 1 9.9319 -2.1512 2.4324 44 1 9.9216 -0.0245 4.3854 45 1 8.4055 -0.6096 3.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363993231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:13 Heat of formation + Delta-G solvation = 18.018060 kcal Electronic energy + Delta-G solvation = -28956.080814 eV Core-core repulsion = 24944.541921 eV Total energy + Delta-G solvation = -4011.538893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.35665 -39.79653 -38.31786 -37.64761 -36.86888 -36.61984 -34.60601 -34.00483 -32.10820 -31.46177 -28.46406 -27.49857 -26.91387 -26.55615 -24.88152 -23.27272 -23.17685 -22.39215 -20.55338 -20.38648 -19.02653 -18.55202 -18.50037 -18.13327 -17.51243 -17.13217 -16.68448 -16.35198 -16.07003 -15.90205 -15.42067 -14.94062 -14.73304 -14.62721 -14.41417 -14.02387 -13.72901 -13.62155 -13.55626 -13.42123 -13.28524 -13.14840 -13.12008 -12.99903 -12.77425 -12.66347 -12.62120 -12.54456 -12.21273 -12.02123 -11.82342 -11.72835 -11.65603 -11.52179 -11.49404 -10.92013 -10.51200 -10.45909 -10.34086 -9.72655 -8.08465 -6.21856 -0.30944 0.56196 1.33223 1.41218 1.50004 1.50826 1.60188 2.13435 2.49726 2.65451 3.07066 3.24196 3.34699 3.38239 3.49482 3.70424 3.75980 3.84633 4.04186 4.06242 4.34835 4.37703 4.47899 4.49597 4.57118 4.65361 4.69150 4.76869 4.86211 4.91047 4.93179 5.02293 5.05360 5.05718 5.08837 5.22854 5.31807 5.36055 5.47578 5.59953 5.69157 5.84732 5.93468 6.18670 6.19359 6.90462 7.44969 7.47996 8.99993 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004216 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.747032 B = 6639.771714 C = 8137.673695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.992 5.992 4 C 0.256 3.744 5 C -0.534 4.534 6 H 0.086 0.914 7 C 0.011 3.989 8 N -0.931 5.931 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.244 1.244 13 S 2.801 3.199 14 O -1.003 7.003 15 O -1.020 7.020 16 N -1.109 6.109 17 C 0.211 3.789 18 C -0.044 4.044 19 C -0.014 4.014 20 N -0.271 5.271 21 C 0.094 3.906 22 C -0.142 4.142 23 C -0.120 4.120 24 C -0.142 4.142 25 N -0.112 5.112 26 N -0.298 5.298 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.420 0.580 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.227 0.773 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.532 -14.984 9.486 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.833 5.833 4 C 0.133 3.867 5 C -0.573 4.573 6 H 0.104 0.896 7 C -0.188 4.188 8 N -0.571 5.571 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.225 1.225 12 H -0.167 1.167 13 S 2.809 3.191 14 O -0.987 6.987 15 O -1.003 7.003 16 N -0.871 5.871 17 C 0.083 3.917 18 C -0.184 4.184 19 C -0.166 4.166 20 N -0.064 5.064 21 C -0.006 4.006 22 C -0.181 4.181 23 C -0.158 4.158 24 C -0.181 4.181 25 N -0.090 5.090 26 N -0.164 5.164 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.254 0.746 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.243 0.757 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.394 -13.119 10.725 22.233 hybrid contribution 0.364 -0.531 -1.338 1.485 sum 14.757 -13.650 9.386 22.186 Atomic orbital electron populations 1.22207 0.96320 1.03103 1.01200 1.21272 0.94320 0.81087 1.03631 1.57602 1.79224 1.24277 1.22215 1.18800 0.96783 0.91093 0.80071 1.21832 1.07235 1.20966 1.07275 0.89571 1.25818 1.00285 0.94748 0.97947 1.70088 1.40215 1.26600 1.20170 0.85643 0.80084 0.77387 0.79215 1.20130 1.22524 1.16660 1.01100 0.72939 0.72687 0.72396 1.93530 1.70276 1.76294 1.58614 1.93536 1.86623 1.34075 1.86106 1.55618 1.23839 1.68159 1.39493 1.19440 0.80641 1.00018 0.91551 1.21976 0.99415 0.94636 1.02396 1.23753 0.88174 1.03760 1.00960 1.47832 1.15638 1.15149 1.27808 1.24143 0.83023 0.91338 1.02097 1.23550 1.03949 0.93278 0.97279 1.22724 1.00878 0.99132 0.93046 1.23424 1.02238 0.94031 0.98384 1.78191 1.11332 0.99416 1.20110 1.75067 1.02767 1.25538 1.13071 0.89072 0.93914 0.93323 0.89363 0.89492 0.96517 0.96351 0.92864 0.74557 0.91848 0.87159 0.75654 0.84002 0.88141 0.88386 0.87572 0.88750 0.89218 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 10.24 71.98 0.74 -4.29 16 2 C 0.12 3.85 6.01 86.38 0.52 4.37 16 3 N -0.99 -39.08 2.84 -519.83 -1.48 -40.56 16 4 C 0.26 12.40 5.48 85.64 0.47 12.86 16 5 C -0.53 -25.47 7.94 25.60 0.20 -25.26 16 6 H 0.09 3.66 6.74 -2.91 -0.02 3.64 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -52.63 13.29 21.45 0.28 -52.34 16 9 Si 0.95 38.83 29.54 68.60 2.03 40.86 16 10 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.24 -8.70 7.11 99.48 0.71 -7.99 16 13 S 2.80 111.93 6.11 -56.49 -0.34 111.58 16 14 O -1.00 -40.25 17.09 -128.00 -2.19 -42.44 16 15 O -1.02 -50.28 16.09 -128.00 -2.06 -52.34 16 16 N -1.11 -36.89 6.04 -190.79 -1.15 -38.04 16 17 C 0.21 7.45 6.72 85.63 0.58 8.02 16 18 C -0.04 -1.40 6.64 41.59 0.28 -1.13 16 19 C -0.01 -0.32 10.71 83.49 0.89 0.57 16 20 N -0.27 -6.13 3.53 -324.68 -1.15 -7.28 16 21 C 0.09 1.20 4.95 45.52 0.23 1.42 16 22 C -0.14 -1.08 7.45 31.18 0.23 -0.85 16 23 C -0.12 -0.55 8.09 31.18 0.25 -0.30 16 24 C -0.14 -1.32 7.88 31.12 0.25 -1.08 16 25 N -0.11 -3.49 13.17 37.02 0.49 -3.00 16 26 N -0.30 -10.82 12.41 -48.60 -0.60 -11.43 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.04 1.36 8.11 -2.38 -0.02 1.34 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 31 H 0.09 2.31 7.64 -2.39 -0.02 2.29 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.02 1.03 6.83 -2.39 -0.02 1.01 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.42 11.63 8.65 -96.75 -0.84 10.80 16 36 H 0.06 2.65 7.72 -2.39 -0.02 2.63 16 37 H 0.11 3.79 5.58 -2.39 -0.01 3.78 16 38 H 0.23 3.41 6.74 -2.91 -0.02 3.39 16 39 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 0.76 6.33 -2.38 -0.02 0.74 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.65 382.98 -0.91 -75.56 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.18 Total: 24.05 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.09 Total: -4.62 kcal Atomic # 7 Polarization: -149.04 SS G_CDS: -3.61 Total: -152.65 kcal Atomic # 8 Polarization: -90.53 SS G_CDS: -4.25 Total: -94.78 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: 111.93 SS G_CDS: -0.34 Total: 111.58 kcal Total: -74.65 -0.91 -75.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363993231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.575 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds