Wall clock time and date at job start Wed Apr 1 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.47017 * 125.64829 * 90.02337 * 17 14 12 19 19 C 1.54329 * 107.26989 * 181.02517 * 18 17 14 20 20 C 1.55164 * 102.94061 * 22.19312 * 19 18 17 21 21 H 1.08999 * 111.00080 * 82.57258 * 20 19 18 22 22 C 1.50699 * 111.00019 * 206.38228 * 20 19 18 23 23 N 1.30520 * 126.34471 * 58.57723 * 22 20 19 24 24 N 1.28597 * 109.67182 * 179.97438 * 23 22 20 25 25 C 1.30513 * 109.67311 * 359.97438 * 24 23 22 26 26 N 1.35495 * 107.31095 * 359.77648 * 25 24 23 27 27 C 1.46492 * 126.98633 * 180.22694 * 26 25 24 28 28 C 1.47428 * 125.64650 * 269.71880 * 17 14 12 29 29 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 31 31 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 32 32 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 34 34 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 35 35 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 36 36 H 1.08997 * 109.88191 * 300.44089 * 18 17 14 37 37 H 1.08992 * 109.88299 * 61.60753 * 18 17 14 38 38 H 1.08998 * 110.71939 * 140.55151 * 19 18 17 39 39 H 1.09001 * 110.72028 * 263.65311 * 19 18 17 40 40 H 1.08006 * 126.34510 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.47213 * 270.15658 * 27 26 25 42 42 H 1.09004 * 109.47293 * 30.15088 * 27 26 25 43 43 H 1.08998 * 109.47741 * 150.14976 * 27 26 25 44 44 H 1.08991 * 110.36681 * 274.74605 * 28 17 14 45 45 H 1.09003 * 110.36801 * 37.06796 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8180 18 6 5.2947 0.7685 0.9038 19 6 6.7036 0.1595 0.7429 20 6 6.4854 -1.3276 1.1283 21 1 6.0981 -1.8973 0.2836 22 6 7.7578 -1.9419 1.6525 23 7 8.4480 -1.5318 2.6816 24 7 9.4748 -2.2888 2.8437 25 6 9.4859 -3.2166 1.9258 26 7 8.3938 -3.0262 1.1468 27 6 7.9854 -3.8276 -0.0095 28 6 5.4253 -1.2027 2.2538 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7088 1.1614 -3.4843 33 1 0.7375 -2.1444 1.9993 34 1 2.4628 -2.5819 1.9863 35 1 1.5294 -2.5969 0.4707 36 1 4.7954 0.8085 -0.0642 37 1 5.3700 1.7705 1.3261 38 1 7.0449 0.2444 -0.2888 39 1 7.4100 0.6371 1.4219 40 1 10.2266 -3.9941 1.8105 41 1 8.4337 -3.4157 -0.9136 42 1 8.3193 -4.8564 0.1253 43 1 6.8994 -3.8071 -0.1006 44 1 5.9023 -0.9529 3.2015 45 1 4.8593 -2.1297 2.3458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364062457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:34 Heat of formation + Delta-G solvation = -6.077588 kcal Electronic energy + Delta-G solvation = -29650.236402 eV Core-core repulsion = 25637.652643 eV Total energy + Delta-G solvation = -4012.583759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.09512 -39.52688 -38.39762 -37.87461 -36.94846 -35.95952 -34.47438 -33.38995 -30.96127 -30.79927 -29.54614 -28.36494 -27.23433 -26.99509 -24.48323 -23.35138 -23.00334 -22.47644 -21.03473 -19.99523 -18.85851 -18.52816 -18.33504 -18.02210 -17.20007 -17.16089 -16.88462 -16.29434 -16.00274 -15.29879 -15.14522 -14.83812 -14.69808 -14.53364 -14.37415 -14.24397 -14.19827 -13.71441 -13.51023 -13.39431 -13.29965 -13.19060 -12.97376 -12.90113 -12.75746 -12.67489 -12.64277 -12.51475 -12.37483 -12.15052 -12.11191 -11.91135 -11.84164 -11.26728 -11.16680 -11.06162 -10.46825 -10.20705 -10.04023 -9.64864 -8.04263 -6.19512 -0.42521 0.84139 1.49025 1.51543 1.59540 1.61507 1.87652 1.97251 2.48922 2.54826 3.05676 3.24838 3.26608 3.57104 3.61730 3.80804 3.92627 3.99864 4.09982 4.25740 4.33729 4.38124 4.44365 4.56611 4.69067 4.74664 4.77337 4.81310 4.83465 4.87732 4.93901 4.98017 5.01272 5.11105 5.15436 5.19304 5.26576 5.27002 5.34701 5.64558 5.74199 5.88393 5.97743 6.12675 6.31971 6.89904 7.50320 7.76109 9.00793 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.004402 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.944558 B = 6359.911957 C = 7856.374552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.272 3.728 3 H 0.024 0.976 4 C -0.523 4.523 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.254 1.254 10 H -0.290 1.290 11 H -0.287 1.287 12 N -0.994 5.994 13 C 0.101 3.899 14 S 2.806 3.194 15 O -1.011 7.011 16 O -1.004 7.004 17 N -1.016 6.016 18 C 0.117 3.883 19 C -0.101 4.101 20 C -0.007 4.007 21 H 0.128 0.872 22 C 0.185 3.815 23 N -0.330 5.330 24 N -0.350 5.350 25 C 0.165 3.835 26 N -0.470 5.470 27 C 0.059 3.941 28 C 0.137 3.863 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.262 0.738 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.263 0.737 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.351 -12.737 0.547 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.562 4.562 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.178 1.178 10 H -0.216 1.216 11 H -0.213 1.213 12 N -0.836 5.836 13 C -0.045 4.045 14 S 2.818 3.182 15 O -0.995 6.995 16 O -0.988 6.988 17 N -0.856 5.856 18 C -0.008 4.008 19 C -0.140 4.140 20 C -0.029 4.029 21 H 0.145 0.855 22 C -0.084 4.084 23 N -0.170 5.170 24 N -0.189 5.189 25 C -0.124 4.124 26 N -0.160 5.160 27 C -0.082 4.082 28 C 0.011 3.989 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.278 0.722 41 H 0.117 0.883 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.300 -11.331 2.407 18.403 hybrid contribution -0.384 -0.835 -2.087 2.281 sum 13.916 -12.166 0.320 18.487 Atomic orbital electron populations 1.21964 0.98143 1.00069 0.99808 1.18442 0.91767 0.91460 0.81527 0.95857 1.21610 1.31416 1.13037 0.90133 0.90668 1.25717 0.95197 0.95548 1.01921 1.70042 1.37565 1.24201 1.24183 0.85483 0.77953 0.78822 0.79168 1.17751 1.21629 1.21304 1.57710 1.64500 1.22584 1.38774 1.21396 1.00268 0.80428 1.02398 1.00899 0.72090 0.72472 0.72749 1.93528 1.84362 1.34458 1.87187 1.93519 1.86308 1.76390 1.42575 1.58889 1.28130 1.37362 1.61238 1.21815 0.92324 0.93469 0.93194 1.22611 0.95162 0.92275 1.03985 1.20774 0.86854 0.97066 0.98211 0.85459 1.24439 0.98816 0.90091 0.95094 1.74156 1.03242 1.23554 1.16009 1.74172 1.15795 1.05766 1.23173 1.27241 0.92704 1.02366 0.90047 1.46442 1.19982 1.23306 1.26267 1.22563 1.03736 0.96761 0.85099 1.21989 0.90680 0.89379 0.96898 0.93645 0.96640 0.91122 0.92894 0.93246 0.90915 0.89909 0.91086 0.91551 0.87530 0.90123 0.72180 0.88291 0.85907 0.88382 0.91385 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.59 8.97 71.98 0.65 -5.95 16 2 C 0.27 12.87 2.62 44.25 0.12 12.99 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -24.63 7.99 25.60 0.20 -24.43 16 5 H 0.08 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.02 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -49.17 11.32 21.45 0.24 -48.92 16 8 Si 0.96 38.08 29.54 68.60 2.03 40.11 16 9 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 10 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 12 N -0.99 -39.64 3.12 -520.44 -1.62 -41.26 16 13 C 0.10 3.27 9.28 127.77 1.19 4.45 16 14 S 2.81 112.20 6.30 -56.49 -0.36 111.84 16 15 O -1.01 -47.92 16.28 -128.00 -2.08 -50.01 16 16 O -1.00 -41.64 16.79 -128.00 -2.15 -43.79 16 17 N -1.02 -32.98 3.75 -506.04 -1.90 -34.88 16 18 C 0.12 3.46 6.99 86.73 0.61 4.06 16 19 C -0.10 -2.25 6.40 31.79 0.20 -2.05 16 20 C -0.01 -0.14 3.43 -10.07 -0.03 -0.18 16 21 H 0.13 2.14 6.99 -2.39 -0.02 2.12 16 22 C 0.19 4.08 6.69 137.98 0.92 5.01 16 23 N -0.33 -9.53 11.94 -50.15 -0.60 -10.13 16 24 N -0.35 -9.27 12.21 -59.99 -0.73 -10.00 16 25 C 0.16 2.59 12.74 180.11 2.30 4.89 16 26 N -0.47 -6.95 3.15 -542.09 -1.71 -8.66 16 27 C 0.06 0.31 10.94 127.77 1.40 1.70 16 28 C 0.14 3.67 6.44 86.93 0.56 4.23 16 29 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 30 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 32 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.98 7.79 -2.39 -0.02 1.96 16 35 H 0.08 2.64 7.02 -2.38 -0.02 2.62 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 40 H 0.26 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.10 0.52 7.19 -2.39 -0.02 0.50 16 44 H 0.07 2.00 7.86 -2.39 -0.02 1.98 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.11 377.86 0.66 -74.45 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.99 Total: 15.31 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 8.55 Total: 5.95 kcal Atomic # 7 Polarization: -147.54 SS G_CDS: -6.32 Total: -153.86 kcal Atomic # 8 Polarization: -89.57 SS G_CDS: -4.23 Total: -93.80 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: 112.20 SS G_CDS: -0.36 Total: 111.84 kcal Total: -75.11 0.66 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364062457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.370 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds