Wall clock time and date at job start Wed Apr 1 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47353 * 2 1 4 4 C 1.50701 * 109.47218 * 120.00669 * 2 1 3 5 5 H 1.07996 * 119.99909 * 120.00291 * 4 2 1 6 6 C 1.37880 * 120.00063 * 299.99526 * 4 2 1 7 7 N 1.31516 * 119.99899 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47288 * 89.99914 * 8 6 4 10 10 H 1.48498 * 109.47128 * 210.00275 * 8 6 4 11 11 H 1.48500 * 109.47038 * 330.00173 * 8 6 4 12 12 N 1.46497 * 109.46866 * 240.00557 * 2 1 3 13 13 C 1.46506 * 120.00109 * 299.99914 * 12 2 1 14 14 S 1.65601 * 120.00083 * 119.99747 * 12 2 1 15 15 O 1.42097 * 106.40478 * 336.46074 * 14 12 2 16 16 O 1.42100 * 106.40216 * 203.53898 * 14 12 2 17 17 N 1.65607 * 107.21618 * 90.00364 * 14 12 2 18 18 C 1.47417 * 125.65184 * 89.97513 * 17 14 12 19 19 C 1.54905 * 104.83330 * 155.90219 * 18 17 14 20 20 C 1.55158 * 101.57963 * 37.00906 * 19 18 17 21 21 H 1.09006 * 110.71846 * 83.03835 * 20 19 18 22 22 C 1.50701 * 110.72072 * 206.12851 * 20 19 18 23 23 N 1.30524 * 126.34284 * 56.13932 * 22 20 19 24 24 N 1.28592 * 109.67571 * 180.02562 * 23 22 20 25 25 C 1.30523 * 109.67062 * 359.97438 * 24 23 22 26 26 N 1.35485 * 126.35040 * 236.17817 * 22 20 19 27 27 C 1.46500 * 126.98239 * 359.94318 * 26 22 20 28 28 C 1.47319 * 125.60968 * 270.19335 * 17 14 12 29 29 H 1.09006 * 109.46959 * 299.99104 * 1 2 3 30 30 H 1.09000 * 109.47481 * 59.99423 * 1 2 3 31 31 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 32 32 H 0.96988 * 119.99995 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47021 * 270.00007 * 13 12 2 34 34 H 1.09000 * 109.46890 * 29.99773 * 13 12 2 35 35 H 1.09004 * 109.47162 * 149.99954 * 13 12 2 36 36 H 1.09007 * 110.36819 * 37.06396 * 18 17 14 37 37 H 1.08994 * 110.46034 * 274.79158 * 18 17 14 38 38 H 1.09003 * 111.00736 * 278.93684 * 19 18 17 39 39 H 1.09003 * 111.00799 * 155.08572 * 19 18 17 40 40 H 1.07999 * 126.34611 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.47181 * 89.99970 * 27 26 22 42 42 H 1.08996 * 109.47310 * 210.00477 * 27 26 22 43 43 H 1.09006 * 109.46788 * 330.00240 * 27 26 22 44 44 H 1.09000 * 110.06246 * 61.68798 * 28 17 14 45 45 H 1.09004 * 109.85486 * 300.42328 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.6307 -0.5445 4.4117 10 1 1.3446 -0.9495 5.1122 11 1 2.4881 -2.5657 3.7119 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9702 0.1144 -2.2863 15 8 2.6902 1.4975 -2.1193 16 8 2.8225 -0.5643 -3.5260 17 7 4.5437 -0.1042 -1.8182 18 6 5.4232 -1.2059 -2.2491 19 6 6.8611 -0.6556 -2.0780 20 6 6.7195 0.1884 -0.7837 21 1 6.8089 -0.4431 0.1002 22 6 7.7439 1.2933 -0.7530 23 7 7.9170 2.2131 -1.6627 24 7 8.8784 2.9922 -1.3131 25 6 9.3621 2.6051 -0.1643 26 7 8.6563 1.5155 0.2236 27 6 8.8414 0.7366 1.4505 28 6 5.2940 0.7684 -0.8984 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7090 1.1610 3.4845 33 1 2.4156 -2.7376 -0.9720 34 1 0.6903 -2.3001 -0.9848 35 1 1.6236 -2.2850 -2.5004 36 1 5.2345 -1.4558 -3.2933 37 1 5.2744 -2.0816 -1.6174 38 1 7.1430 -0.0290 -2.9241 39 1 7.5760 -1.4667 -1.9393 40 1 10.1745 3.0675 0.3767 41 1 9.5569 -0.0650 1.2676 42 1 9.2180 1.3867 2.2402 43 1 7.8867 0.3086 1.7566 44 1 4.8172 0.7766 0.0817 45 1 5.3369 1.7806 -1.3007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364062495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:43 Heat of formation + Delta-G solvation = 17.797989 kcal Electronic energy + Delta-G solvation = -29656.045946 eV Core-core repulsion = 25644.497509 eV Total energy + Delta-G solvation = -4011.548436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.23100 -38.38393 -36.68887 -36.15224 -35.22822 -35.21069 -32.64047 -32.31858 -29.76021 -29.09273 -28.52334 -27.79472 -25.57773 -25.17880 -23.30784 -22.50827 -22.01343 -20.72575 -20.04684 -18.49344 -17.52525 -17.14961 -16.89829 -16.43778 -16.41378 -16.01495 -15.26975 -15.08880 -14.69431 -14.19278 -13.82823 -13.70776 -13.56667 -13.36721 -13.12324 -12.99250 -12.85000 -12.57711 -11.95626 -11.84171 -11.79958 -11.62531 -11.57449 -11.43923 -11.39517 -11.23267 -11.18037 -11.04430 -10.93505 -10.88702 -10.48889 -10.36833 -10.33693 -10.29181 -10.07290 -9.32526 -9.26121 -8.67866 -8.53946 -7.97443 -6.14412 -4.23085 1.17174 1.66651 2.29929 2.80762 3.14800 3.24227 3.25788 3.45076 4.03711 4.12853 4.28498 4.31383 4.42258 4.46320 4.57277 4.72290 4.85638 5.00411 5.06615 5.15405 5.21929 5.31632 5.43304 5.64996 5.67431 5.69908 5.75534 5.97031 6.01752 6.04905 6.14497 6.19631 6.27989 6.38931 6.55192 6.66372 6.69471 6.82446 6.89113 7.08492 7.48219 7.59664 7.74833 8.01054 8.22362 8.66334 8.80495 9.42916 10.90581 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.004768 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.603133 B = 5871.654142 C = 7604.800596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.058 0.942 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.990 5.990 13 C 0.100 3.900 14 S 2.795 3.205 15 O -0.973 6.973 16 O -0.993 6.993 17 N -1.016 6.016 18 C 0.120 3.880 19 C -0.114 4.114 20 C -0.014 4.014 21 H 0.102 0.898 22 C 0.191 3.809 23 N -0.285 5.285 24 N -0.297 5.297 25 C 0.144 3.856 26 N -0.476 5.476 27 C 0.069 3.931 28 C 0.137 3.863 29 H 0.093 0.907 30 H 0.013 0.987 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.217 0.783 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.118 -5.247 -1.064 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.046 4.046 14 S 2.806 3.194 15 O -0.957 6.957 16 O -0.977 6.977 17 N -0.854 5.854 18 C -0.005 4.005 19 C -0.154 4.154 20 C -0.037 4.037 21 H 0.120 0.880 22 C -0.077 4.077 23 N -0.125 5.125 24 N -0.136 5.136 25 C -0.143 4.143 26 N -0.167 5.167 27 C -0.074 4.074 28 C 0.010 3.990 29 H 0.111 0.889 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.234 0.766 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.460 -3.794 -2.956 15.239 hybrid contribution 0.764 -1.393 2.830 3.245 sum 15.224 -5.187 -0.126 16.084 Atomic orbital electron populations 1.22064 0.97996 0.99618 1.00871 1.18736 0.91903 0.92701 0.80320 0.92408 1.21373 1.31814 1.12989 0.90105 0.91980 1.24937 0.95057 0.94995 0.98928 1.69879 1.36121 1.22617 1.23786 0.86556 0.78506 0.79920 0.82689 1.20860 1.21174 1.19947 1.57795 1.63991 1.21508 1.39925 1.21246 1.01755 0.81795 0.99820 1.01460 0.71541 0.73402 0.73008 1.93588 1.83356 1.32051 1.86727 1.93519 1.85710 1.76519 1.41968 1.59209 1.29332 1.36200 1.60664 1.21932 0.88456 0.89518 1.00637 1.22828 0.96873 0.99017 0.96636 1.20663 0.90717 0.91436 1.00854 0.87989 1.24601 0.95167 1.00473 0.87455 1.74274 1.12291 1.02873 1.23032 1.74276 1.07082 1.21674 1.10589 1.26410 1.01350 0.89754 0.96830 1.46214 1.27041 1.24381 1.19064 1.22173 1.04790 0.96540 0.83912 1.21657 0.88631 0.94077 0.94628 0.88859 0.96787 0.94802 0.92626 0.93958 0.90658 0.92096 0.89820 0.91415 0.89286 0.89929 0.76630 0.89854 0.88806 0.88556 0.89831 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 2 C 0.27 6.40 2.62 -69.08 -0.18 6.22 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -12.92 8.37 -34.44 -0.29 -13.21 16 5 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 8 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 N -0.99 -20.41 3.12 -115.85 -0.36 -20.77 16 13 C 0.10 1.76 9.90 59.85 0.59 2.35 16 14 S 2.80 56.55 6.35 -107.50 -0.68 55.87 16 15 O -0.97 -23.07 16.29 -57.17 -0.93 -24.00 16 16 O -0.99 -20.61 16.06 -57.17 -0.92 -21.52 16 17 N -1.02 -16.93 3.76 -111.21 -0.42 -17.35 16 18 C 0.12 1.53 7.10 -2.54 -0.02 1.52 16 19 C -0.11 -1.25 6.52 -24.58 -0.16 -1.41 16 20 C -0.01 -0.17 3.31 -89.94 -0.30 -0.47 16 21 H 0.10 0.98 7.00 -51.93 -0.36 0.61 16 22 C 0.19 2.49 6.56 -154.99 -1.02 1.48 16 23 N -0.28 -4.61 11.89 32.79 0.39 -4.22 16 24 N -0.30 -4.47 12.21 29.69 0.36 -4.11 16 25 C 0.14 1.50 12.74 -89.94 -1.15 0.36 16 26 N -0.48 -4.76 3.15 -122.69 -0.39 -5.14 16 27 C 0.07 0.37 10.92 59.85 0.65 1.03 16 28 C 0.14 2.19 6.60 -2.90 -0.02 2.17 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 35 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 36 H 0.08 1.04 7.78 -51.92 -0.40 0.64 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.22 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.54 7.23 -51.93 -0.38 0.16 16 44 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.08 1.40 7.67 -51.93 -0.40 1.00 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -34.81 375.61 -9.91 -44.72 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.59 Total: 1.13 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.64 Total: -1.57 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: 0.21 Total: -74.72 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.85 Total: -45.53 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 56.55 SS G_CDS: -0.68 Total: 55.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.81 -9.91 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364062495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.522 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds