Wall clock time and date at job start Wed Apr 1 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.47017 * 125.65296 * 90.02413 * 16 13 3 18 18 C 1.54323 * 107.27256 * 181.02323 * 17 16 13 19 19 C 1.55156 * 102.94432 * 22.19107 * 18 17 16 20 20 H 1.09005 * 111.00413 * 82.57018 * 19 18 17 21 21 C 1.50694 * 111.00519 * 206.38564 * 19 18 17 22 22 N 1.30521 * 126.34730 * 58.57320 * 21 19 18 23 23 N 1.28595 * 109.67312 * 179.97438 * 22 21 19 24 24 C 1.30520 * 109.67604 * 359.97438 * 23 22 21 25 25 N 1.35495 * 107.30443 * 359.77271 * 24 23 22 26 26 C 1.46502 * 126.98022 * 180.22753 * 25 24 23 27 27 C 1.47431 * 125.64354 * 269.71640 * 16 13 3 28 28 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 30 30 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 31 31 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 32 32 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 33 33 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 34 34 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 35 35 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.88273 * 300.43721 * 17 16 13 37 37 H 1.08993 * 109.88406 * 61.60082 * 17 16 13 38 38 H 1.09001 * 110.72063 * 140.55271 * 18 17 16 39 39 H 1.08996 * 110.72203 * 263.65030 * 18 17 16 40 40 H 1.07994 * 126.34903 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.46867 * 270.15275 * 26 25 24 42 42 H 1.08991 * 109.47338 * 30.15372 * 26 25 24 43 43 H 1.09000 * 109.47250 * 150.16092 * 26 25 24 44 44 H 1.09002 * 110.36861 * 274.74326 * 27 16 13 45 45 H 1.08994 * 110.36726 * 37.06905 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 -0.4316 4.0082 3.1189 9 14 2.2076 3.6998 3.9031 10 1 2.9462 4.9208 3.4919 11 1 1.7567 3.8446 5.3105 12 1 3.1006 2.5189 3.7884 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 4.5476 0.6625 -2.4568 18 6 6.0861 0.7818 -2.4441 19 6 6.3544 1.6872 -1.2130 20 1 6.3510 1.1048 -0.2915 21 6 7.6506 2.4398 -1.3681 22 7 7.9570 3.2616 -2.3348 23 7 9.1425 3.7245 -2.1500 24 6 9.6460 3.2195 -1.0569 25 7 8.7116 2.3939 -0.5266 26 6 8.8265 1.6084 0.7046 27 6 5.1420 2.6533 -1.2700 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.9080 2.8919 1.1512 34 1 2.4690 1.4183 2.0480 35 1 -0.5115 4.5281 3.9339 36 1 4.2437 -0.2650 -1.9714 37 1 4.1827 0.6828 -3.4836 38 1 6.5477 -0.1967 -2.3110 39 1 6.4439 1.2542 -3.3588 40 1 10.6244 3.4249 -0.6484 41 1 9.2463 0.6295 0.4732 42 1 9.4793 2.1268 1.4068 43 1 7.8393 1.4843 1.1499 44 1 5.3249 3.4531 -1.9877 45 1 4.9407 3.0675 -0.2822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364915438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:00 Heat of formation + Delta-G solvation = 19.109477 kcal Electronic energy + Delta-G solvation = -29391.655718 eV Core-core repulsion = 25380.164152 eV Total energy + Delta-G solvation = -4011.491566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.38578 -38.62316 -36.72850 -36.21285 -35.36762 -35.22683 -32.54850 -32.51542 -30.14804 -29.94194 -28.71504 -27.95383 -27.26346 -23.59349 -22.60521 -22.59226 -22.17283 -21.70032 -20.29056 -18.73420 -17.67115 -17.28158 -17.14125 -16.68433 -16.55888 -16.12736 -15.51419 -15.30719 -14.57732 -14.18165 -13.97695 -13.85698 -13.73877 -13.55083 -13.43020 -13.21942 -12.91419 -12.84515 -12.60798 -12.10993 -11.97611 -11.75152 -11.68135 -11.61627 -11.52082 -11.37055 -11.30033 -11.14117 -11.10748 -11.05452 -10.53443 -10.50258 -10.49357 -10.28737 -10.23896 -9.47971 -9.40462 -8.97370 -8.61931 -8.18959 -6.10646 -4.09401 1.00024 1.50180 2.14010 2.64829 3.20832 3.24764 3.28287 3.35945 3.85027 4.00872 4.15843 4.27644 4.28305 4.34104 4.44064 4.56068 4.64448 4.85245 4.92092 4.98386 5.12912 5.17200 5.20427 5.30176 5.42361 5.51376 5.57029 5.69228 5.77766 5.82730 5.83831 5.88552 6.00711 6.06059 6.16162 6.31444 6.38831 6.51980 6.60532 6.67760 6.98189 7.10179 7.38463 7.55003 8.46717 8.50387 8.95582 9.48223 11.02752 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.004194 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.063852 B = 6674.502961 C = 8127.284435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.136 3.864 3 N -0.987 5.987 4 C 0.228 3.772 5 C -0.529 4.529 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 S 2.791 3.209 14 O -0.982 6.982 15 O -0.954 6.954 16 N -1.024 6.024 17 C 0.123 3.877 18 C -0.113 4.113 19 C -0.018 4.018 20 H 0.103 0.897 21 C 0.189 3.811 22 N -0.284 5.284 23 N -0.296 5.296 24 C 0.147 3.853 25 N -0.476 5.476 26 C 0.069 3.931 27 C 0.138 3.862 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.218 0.782 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.195 -11.482 -4.091 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 N -0.829 5.829 4 C 0.105 3.895 5 C -0.568 4.568 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.696 3.304 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 S 2.800 3.200 14 O -0.967 6.967 15 O -0.938 6.938 16 N -0.862 5.862 17 C -0.003 4.003 18 C -0.152 4.152 19 C -0.041 4.041 20 H 0.121 0.879 21 C -0.079 4.079 22 N -0.124 5.124 23 N -0.135 5.135 24 C -0.141 4.141 25 N -0.167 5.167 26 C -0.074 4.074 27 C 0.011 3.989 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.235 0.765 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.328 -10.021 -5.731 22.513 hybrid contribution 1.226 -0.703 2.397 2.782 sum 20.553 -10.724 -3.334 23.422 Atomic orbital electron populations 1.22264 0.95865 1.00946 1.04195 1.20988 0.95289 0.81745 1.00994 1.57682 1.78203 1.23259 1.23708 1.19427 0.98147 0.91058 0.80864 1.21418 0.95806 1.31757 1.07844 0.89956 1.24867 0.95619 0.94960 0.97454 1.69888 1.23985 1.34268 1.25050 0.86970 0.83740 0.79167 0.80517 1.19888 1.20976 1.19123 1.01824 0.71560 0.73643 0.72956 1.93548 1.69299 1.76467 1.57345 1.93644 1.84705 1.29890 1.85516 1.59502 1.23882 1.34384 1.68460 1.21647 0.93174 0.88415 0.97038 1.22686 0.95295 0.99537 0.97726 1.20839 0.86708 0.95664 1.00880 0.87919 1.24498 0.92129 1.01209 0.90041 1.74266 1.07412 1.10041 1.20724 1.74286 1.03358 1.21368 1.14493 1.26441 0.97855 0.94782 0.94994 1.46219 1.13623 1.35506 1.21372 1.22176 1.05385 0.96080 0.83772 1.21924 0.83329 0.92541 1.01136 0.93032 0.89848 0.92687 0.92016 0.91181 0.95707 0.95014 0.92533 0.91505 0.90662 0.89920 0.89214 0.76535 0.89755 0.88719 0.88705 0.89781 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.83 37.15 0.37 -2.70 16 2 C 0.14 2.22 6.09 -4.04 -0.02 2.19 16 3 N -0.99 -19.26 2.86 -115.67 -0.33 -19.59 16 4 C 0.23 5.13 4.19 -5.19 -0.02 5.11 16 5 C -0.53 -14.57 8.97 -34.44 -0.31 -14.88 16 6 H 0.08 2.49 7.13 -52.49 -0.37 2.11 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 13 S 2.79 54.80 6.26 -107.50 -0.67 54.13 16 14 O -0.98 -20.28 16.69 -57.17 -0.95 -21.23 16 15 O -0.95 -22.84 16.69 -57.17 -0.95 -23.80 16 16 N -1.02 -15.06 3.75 -111.29 -0.42 -15.48 16 17 C 0.12 1.35 6.99 -3.07 -0.02 1.33 16 18 C -0.11 -1.01 6.40 -24.90 -0.16 -1.17 16 19 C -0.02 -0.18 3.43 -89.51 -0.31 -0.49 16 20 H 0.10 0.78 6.99 -51.93 -0.36 0.42 16 21 C 0.19 2.10 6.69 -154.98 -1.04 1.06 16 22 N -0.28 -4.04 11.94 32.80 0.39 -3.65 16 23 N -0.30 -3.96 12.21 29.69 0.36 -3.60 16 24 C 0.15 1.30 12.74 -89.95 -1.15 0.15 16 25 N -0.48 -3.93 3.15 -122.69 -0.39 -4.31 16 26 C 0.07 0.26 10.94 59.85 0.65 0.91 16 27 C 0.14 1.87 6.44 -2.41 -0.02 1.86 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.71 6.59 -51.93 -0.34 1.36 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.85 7.61 -51.93 -0.40 0.46 16 32 H 0.07 1.00 8.00 -51.93 -0.42 0.59 16 33 H 0.03 0.56 7.04 -51.93 -0.37 0.20 16 34 H 0.03 0.67 7.06 -51.93 -0.37 0.30 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.89 7.98 -51.93 -0.41 0.48 16 40 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 0.34 7.19 -51.93 -0.37 -0.03 16 44 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -38.27 378.87 -10.06 -48.33 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.79 Total: -1.41 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.12 Total: -4.64 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: 0.39 Total: -72.84 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.91 Total: -45.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.67 Total: 54.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.27 -10.06 -48.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364915438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.440 kcal (2) G-P(sol) polarization free energy of solvation -38.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds