Wall clock time and date at job start Wed Apr 1 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.47017 * 125.65296 * 90.02413 * 16 13 3 18 18 C 1.54323 * 107.27256 * 181.02323 * 17 16 13 19 19 C 1.55156 * 102.94432 * 22.19107 * 18 17 16 20 20 H 1.09005 * 111.00413 * 82.57018 * 19 18 17 21 21 C 1.50694 * 111.00519 * 206.38564 * 19 18 17 22 22 N 1.30521 * 126.34730 * 58.57320 * 21 19 18 23 23 N 1.28595 * 109.67312 * 179.97438 * 22 21 19 24 24 C 1.30520 * 109.67604 * 359.97438 * 23 22 21 25 25 N 1.35495 * 107.30443 * 359.77271 * 24 23 22 26 26 C 1.46502 * 126.98022 * 180.22753 * 25 24 23 27 27 C 1.47431 * 125.64354 * 269.71640 * 16 13 3 28 28 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 30 30 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 31 31 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 32 32 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 33 33 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 34 34 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 35 35 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.88273 * 300.43721 * 17 16 13 37 37 H 1.08993 * 109.88406 * 61.60082 * 17 16 13 38 38 H 1.09001 * 110.72063 * 140.55271 * 18 17 16 39 39 H 1.08996 * 110.72203 * 263.65030 * 18 17 16 40 40 H 1.07994 * 126.34903 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.46867 * 270.15275 * 26 25 24 42 42 H 1.08991 * 109.47338 * 30.15372 * 26 25 24 43 43 H 1.09000 * 109.47250 * 150.16092 * 26 25 24 44 44 H 1.09002 * 110.36861 * 274.74326 * 27 16 13 45 45 H 1.08994 * 110.36726 * 37.06905 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 -0.4316 4.0082 3.1189 9 14 2.2076 3.6998 3.9031 10 1 2.9462 4.9208 3.4919 11 1 1.7567 3.8446 5.3105 12 1 3.1006 2.5189 3.7884 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 4.5476 0.6625 -2.4568 18 6 6.0861 0.7818 -2.4441 19 6 6.3544 1.6872 -1.2130 20 1 6.3510 1.1048 -0.2915 21 6 7.6506 2.4398 -1.3681 22 7 7.9570 3.2616 -2.3348 23 7 9.1425 3.7245 -2.1500 24 6 9.6460 3.2195 -1.0569 25 7 8.7116 2.3939 -0.5266 26 6 8.8265 1.6084 0.7046 27 6 5.1420 2.6533 -1.2700 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.9080 2.8919 1.1512 34 1 2.4690 1.4183 2.0480 35 1 -0.5115 4.5281 3.9339 36 1 4.2437 -0.2650 -1.9714 37 1 4.1827 0.6828 -3.4836 38 1 6.5477 -0.1967 -2.3110 39 1 6.4439 1.2542 -3.3588 40 1 10.6244 3.4249 -0.6484 41 1 9.2463 0.6295 0.4732 42 1 9.4793 2.1268 1.4068 43 1 7.8393 1.4843 1.1499 44 1 5.3249 3.4531 -1.9877 45 1 4.9407 3.0675 -0.2822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364915438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:59 Heat of formation + Delta-G solvation = -9.532955 kcal Electronic energy + Delta-G solvation = -29392.897747 eV Core-core repulsion = 25380.164152 eV Total energy + Delta-G solvation = -4012.733595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.09877 -39.55880 -38.38598 -37.78309 -36.90664 -35.96472 -34.59373 -33.41317 -31.73264 -30.84000 -29.57948 -29.09758 -28.35715 -24.57618 -24.28382 -23.47916 -23.23697 -22.90427 -21.04085 -20.06651 -19.10420 -18.79692 -18.39020 -18.06683 -17.31305 -17.18383 -16.80358 -16.28940 -16.00043 -15.51179 -15.14886 -14.84896 -14.66725 -14.58186 -14.54372 -14.30231 -14.23304 -14.19398 -13.82460 -13.42912 -13.25061 -13.21330 -13.09302 -12.89774 -12.87355 -12.73307 -12.68683 -12.51584 -12.38470 -12.18596 -11.95458 -11.86908 -11.72523 -11.47297 -11.26466 -11.05603 -10.74741 -10.23139 -10.09351 -9.80512 -8.24574 -6.29322 -0.50917 0.83728 1.35232 1.41167 1.48551 1.60102 1.87264 2.00856 2.37638 2.52837 3.04660 3.09056 3.24770 3.58052 3.61712 3.79379 3.90636 3.93174 4.01057 4.24683 4.30299 4.35888 4.44744 4.46545 4.50176 4.55344 4.69657 4.73123 4.77204 4.81888 4.85287 4.89318 4.96102 4.97202 5.05447 5.06767 5.18526 5.28462 5.34745 5.41596 5.52469 5.57373 5.86275 5.98163 6.35505 6.74920 7.32653 7.75779 8.92802 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.004194 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.063852 B = 6674.502961 C = 8127.284435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.127 3.873 3 N -0.990 5.990 4 C 0.235 3.765 5 C -0.536 4.536 6 H 0.033 0.967 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.939 3.061 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.218 1.218 13 S 2.803 3.197 14 O -1.000 7.000 15 O -1.010 7.010 16 N -1.017 6.017 17 C 0.112 3.888 18 C -0.101 4.101 19 C -0.005 4.005 20 H 0.139 0.861 21 C 0.183 3.817 22 N -0.334 5.334 23 N -0.353 5.353 24 C 0.164 3.836 25 N -0.471 5.471 26 C 0.058 3.942 27 C 0.129 3.871 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.261 0.739 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.297 -14.793 -2.354 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.003 3.997 3 N -0.831 5.831 4 C 0.111 3.889 5 C -0.575 4.575 6 H 0.051 0.949 7 C -0.193 4.193 8 N -0.592 5.592 9 Si 0.761 3.239 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.140 1.140 13 S 2.813 3.187 14 O -0.984 6.984 15 O -0.994 6.994 16 N -0.859 5.859 17 C -0.012 4.012 18 C -0.141 4.141 19 C -0.028 4.028 20 H 0.156 0.844 21 C -0.087 4.087 22 N -0.174 5.174 23 N -0.191 5.191 24 C -0.125 4.125 25 N -0.160 5.160 26 C -0.082 4.082 27 C 0.003 3.997 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.277 0.723 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.429 -13.384 -4.014 27.279 hybrid contribution -0.087 0.304 1.765 1.793 sum 23.342 -13.081 -2.249 26.852 Atomic orbital electron populations 1.22244 0.97666 1.02341 1.00997 1.21342 0.93859 0.80432 1.04112 1.57581 1.78872 1.24338 1.22304 1.19246 0.95064 0.91838 0.82778 1.21763 0.96849 1.31857 1.07037 0.94886 1.25939 0.99237 0.94563 0.99557 1.70083 1.27122 1.35960 1.26040 0.85860 0.79797 0.80687 0.77574 1.20168 1.20815 1.14017 1.01072 0.72448 0.72344 0.72810 1.93511 1.70673 1.76354 1.57864 1.93567 1.86104 1.33502 1.86203 1.58986 1.22356 1.35885 1.68632 1.22034 0.94579 0.87952 0.96681 1.22662 0.93582 1.01144 0.96687 1.20839 0.84352 0.94654 1.02908 0.84363 1.24558 0.93086 1.00896 0.90134 1.74151 1.08388 1.11823 1.23029 1.74173 1.03853 1.23741 1.17381 1.27231 0.98873 0.92913 0.93464 1.46460 1.12370 1.35221 1.21976 1.22595 1.06547 0.96841 0.82233 1.22003 0.84617 0.93091 1.00019 0.89322 0.93624 0.95279 0.88753 0.87994 0.95373 0.91880 0.92602 0.88472 0.91205 0.85990 0.90825 0.72323 0.87560 0.86481 0.88132 0.92136 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.09 9.83 71.98 0.71 -5.38 16 2 C 0.13 3.81 6.09 86.38 0.53 4.34 16 3 N -0.99 -37.41 2.86 -519.85 -1.48 -38.90 16 4 C 0.24 10.22 4.19 85.63 0.36 10.58 16 5 C -0.54 -30.29 8.97 25.60 0.23 -30.06 16 6 H 0.03 2.13 7.13 -2.91 -0.02 2.11 16 7 C 0.00 0.24 5.47 84.66 0.46 0.70 16 8 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 9 Si 0.94 41.24 27.47 68.60 1.88 43.13 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.22 -7.84 6.54 99.48 0.65 -7.18 16 13 S 2.80 110.46 6.26 -56.49 -0.35 110.11 16 14 O -1.00 -41.49 16.69 -128.00 -2.14 -43.63 16 15 O -1.01 -50.44 16.69 -128.00 -2.14 -52.57 16 16 N -1.02 -28.55 3.75 -506.01 -1.90 -30.45 16 17 C 0.11 2.14 6.99 86.73 0.61 2.74 16 18 C -0.10 -1.47 6.40 31.78 0.20 -1.27 16 19 C -0.01 -0.09 3.43 -10.07 -0.03 -0.12 16 20 H 0.14 1.34 6.99 -2.38 -0.02 1.32 16 21 C 0.18 3.66 6.69 137.97 0.92 4.58 16 22 N -0.33 -9.41 11.94 -50.16 -0.60 -10.01 16 23 N -0.35 -9.23 12.21 -59.99 -0.73 -9.97 16 24 C 0.16 2.46 12.74 180.11 2.30 4.76 16 25 N -0.47 -6.09 3.15 -542.09 -1.71 -7.80 16 26 C 0.06 0.13 10.94 127.77 1.40 1.53 16 27 C 0.13 3.40 6.44 86.93 0.56 3.96 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.04 1.93 6.59 -2.39 -0.02 1.91 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 2.24 7.61 -2.39 -0.02 2.22 16 32 H 0.10 2.45 8.00 -2.39 -0.02 2.43 16 33 H 0.03 1.22 7.04 -2.39 -0.02 1.21 16 34 H 0.06 2.38 7.06 -2.39 -0.02 2.36 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.35 7.98 -2.39 -0.02 1.33 16 40 H 0.26 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.10 0.17 7.19 -2.39 -0.02 0.15 16 44 H 0.06 1.86 7.86 -2.39 -0.02 1.84 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -92.56 378.87 0.31 -92.25 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.94 Total: 11.13 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 8.24 Total: -3.64 kcal Atomic # 7 Polarization: -150.66 SS G_CDS: -6.12 Total: -156.78 kcal Atomic # 8 Polarization: -91.93 SS G_CDS: -4.27 Total: -96.20 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.13 kcal Atomic # 16 Polarization: 110.46 SS G_CDS: -0.35 Total: 110.11 kcal Total: -92.56 0.31 -92.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364915438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.722 kcal (2) G-P(sol) polarization free energy of solvation -92.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds