Wall clock time and date at job start Wed Apr 1 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47576 * 2 1 4 4 C 1.46499 * 120.00117 * 275.00135 * 3 2 1 5 5 C 1.50697 * 109.47343 * 274.99777 * 4 3 2 6 6 H 1.08007 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00114 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99852 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47032 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46894 * 119.99709 * 9 7 5 12 12 H 1.48495 * 109.46965 * 239.99561 * 9 7 5 13 13 S 1.65608 * 120.00164 * 94.99746 * 3 2 1 14 14 O 1.42104 * 106.39724 * 23.54333 * 13 3 2 15 15 O 1.42097 * 106.40199 * 156.46245 * 13 3 2 16 16 N 1.65601 * 107.21642 * 270.00708 * 13 3 2 17 17 C 1.47417 * 125.65236 * 90.02509 * 16 13 3 18 18 C 1.54911 * 104.83420 * 204.09044 * 17 16 13 19 19 C 1.55160 * 101.57801 * 322.98696 * 18 17 16 20 20 H 1.08998 * 110.72102 * 276.96219 * 19 18 17 21 21 C 1.50704 * 110.71608 * 153.86430 * 19 18 17 22 22 N 1.30520 * 126.35104 * 301.47964 * 21 19 18 23 23 N 1.28590 * 109.67672 * 179.97438 * 22 21 19 24 24 C 1.30527 * 109.67138 * 359.97438 * 23 22 21 25 25 N 1.35490 * 107.30411 * 359.77896 * 24 23 22 26 26 C 1.46500 * 126.97778 * 180.22504 * 25 24 23 27 27 C 1.47022 * 125.64349 * 269.70953 * 16 13 3 28 28 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47042 * 300.00192 * 1 2 3 30 30 H 1.09003 * 109.47051 * 59.99643 * 1 2 3 31 31 H 1.09006 * 109.47477 * 239.99894 * 2 1 3 32 32 H 1.09009 * 109.47079 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.47068 * 34.99758 * 4 3 2 34 34 H 1.09001 * 109.47179 * 154.99399 * 4 3 2 35 35 H 0.97002 * 119.99991 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.36409 * 322.92717 * 17 16 13 37 37 H 1.09005 * 110.37081 * 85.13850 * 17 16 13 38 38 H 1.08998 * 111.00705 * 81.05995 * 18 17 16 39 39 H 1.09000 * 111.00601 * 204.87754 * 18 17 16 40 40 H 1.07998 * 126.34573 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.47387 * 270.15316 * 26 25 24 42 42 H 1.09005 * 109.47286 * 30.15243 * 26 25 24 43 43 H 1.09003 * 109.47476 * 150.15164 * 26 25 24 44 44 H 1.08995 * 109.88774 * 298.39711 * 27 16 13 45 45 H 1.09004 * 109.88353 * 59.56518 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1116 -1.3835 7 6 3.8530 2.3613 -3.0843 8 7 3.0281 3.1863 -3.6914 9 14 5.5100 1.9653 -3.8505 10 1 6.2463 1.0181 -2.9754 11 1 5.3033 1.3481 -5.1854 12 1 6.2977 3.2152 -3.9997 13 16 2.4122 2.1202 1.4287 14 8 2.7095 1.0798 2.3499 15 8 3.3284 3.1570 1.1050 16 7 1.0431 2.8642 1.9895 17 6 0.0365 2.2549 2.8775 18 6 -1.2645 3.0513 2.6076 19 6 -0.7136 4.4872 2.4019 20 1 -0.5579 4.9816 3.3607 21 6 -1.6422 5.2949 1.5322 22 7 -2.0115 5.0031 0.3148 23 7 -2.8087 5.9110 -0.1252 24 6 -2.9846 6.8232 0.7916 25 7 -2.2536 6.4555 1.8715 26 6 -2.1437 7.1696 3.1459 27 6 0.6336 4.2439 1.6893 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.3618 1.8097 -1.9453 34 1 2.0922 3.1802 -1.0756 35 1 3.2800 3.5888 -4.5373 36 1 -0.1036 1.2033 2.6269 37 1 0.3375 2.3588 3.9200 38 1 -1.7633 2.6916 1.7077 39 1 -1.9342 3.0086 3.4666 40 1 -3.6020 7.7053 0.7068 41 1 -1.3147 7.8756 3.0966 42 1 -3.0701 7.7101 3.3407 43 1 -1.9647 6.4546 3.9489 44 1 1.3832 4.9424 2.0611 45 1 0.5096 4.3681 0.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364915440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:02 Heat of formation + Delta-G solvation = 16.040360 kcal Electronic energy + Delta-G solvation = -29590.097834 eV Core-core repulsion = 25578.473181 eV Total energy + Delta-G solvation = -4011.624653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.25082 -38.52939 -36.62877 -35.94157 -35.25994 -35.13915 -32.59639 -32.37994 -29.98336 -29.77798 -28.59640 -27.86300 -26.51494 -23.40027 -23.04635 -22.54676 -22.11215 -21.54609 -20.14173 -18.48500 -17.58436 -17.37446 -16.70882 -16.47334 -16.20111 -16.12150 -15.38937 -15.13545 -14.51197 -14.23872 -13.99265 -13.78274 -13.76596 -13.46429 -13.23541 -13.19875 -12.80408 -12.67288 -12.05457 -11.99489 -11.82001 -11.66787 -11.60155 -11.50806 -11.43613 -11.30896 -11.16977 -11.06732 -10.94201 -10.80375 -10.40858 -10.37452 -10.34991 -10.31501 -9.91503 -9.66333 -9.29366 -8.81444 -8.35781 -7.98043 -5.96981 -4.01273 1.17618 1.63504 2.24470 2.82287 3.36492 3.43660 3.47208 3.50598 3.93671 4.16105 4.19110 4.34938 4.39566 4.48393 4.52004 4.61759 4.74619 4.92349 4.99523 5.13832 5.21233 5.33945 5.36716 5.40569 5.56957 5.60165 5.66893 5.77895 5.79944 5.83104 5.92058 5.98517 6.09178 6.10550 6.27643 6.38725 6.51270 6.65050 6.71381 6.76883 7.37846 7.51581 7.72623 7.99951 8.30220 8.67534 9.01228 9.63382 11.11331 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.004037 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.672310 B = 6933.554902 C = 8055.139666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.987 5.987 4 C 0.259 3.741 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.791 3.209 14 O -0.993 6.993 15 O -0.959 6.959 16 N -1.021 6.021 17 C 0.123 3.877 18 C -0.117 4.117 19 C -0.012 4.012 20 H 0.099 0.901 21 C 0.184 3.816 22 N -0.275 5.275 23 N -0.292 5.292 24 C 0.144 3.856 25 N -0.479 5.479 26 C 0.071 3.929 27 C 0.136 3.864 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.217 0.783 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 5.738 17.633 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.829 5.829 4 C 0.137 3.863 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.801 3.199 14 O -0.977 6.977 15 O -0.943 6.943 16 N -0.859 5.859 17 C -0.003 4.003 18 C -0.157 4.157 19 C -0.034 4.034 20 H 0.117 0.883 21 C -0.083 4.083 22 N -0.114 5.114 23 N -0.131 5.131 24 C -0.143 4.143 25 N -0.171 5.171 26 C -0.072 4.072 27 C 0.009 3.991 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.234 0.766 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.805 5.104 16.539 22.140 hybrid contribution 0.478 0.902 0.457 1.118 sum -13.327 6.006 16.996 22.417 Atomic orbital electron populations 1.22295 0.97149 1.01275 1.02339 1.21150 0.93177 0.83214 1.03400 1.57769 1.80658 1.21288 1.23162 1.19024 0.97304 0.91041 0.78883 1.21530 1.02070 1.27612 1.05537 0.92198 1.24927 0.97257 0.94895 0.96911 1.69946 1.35925 1.30210 1.17105 0.86492 0.84042 0.78274 0.78930 1.19672 1.20991 1.20894 1.01706 0.72578 0.72934 0.72698 1.93518 1.83049 1.57480 1.63676 1.93622 1.58791 1.57852 1.84050 1.59439 1.41897 1.22047 1.62491 1.21930 0.86761 0.97639 0.93953 1.22882 0.97250 0.92071 1.03451 1.20607 0.92183 0.94775 0.95867 0.88333 1.24565 1.00437 0.87956 0.95355 1.74359 1.10418 1.20236 1.06409 1.74345 1.13537 1.00690 1.24513 1.26448 1.00557 1.03092 0.84221 1.46216 1.36241 1.19794 1.14802 1.22121 1.04483 0.97879 0.82721 1.21586 0.93210 0.83077 1.01216 0.92340 0.93317 0.91699 0.89696 0.90771 0.94545 0.94636 0.92800 0.90220 0.91371 0.88993 0.89952 0.76614 0.89767 0.88943 0.89051 0.90829 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.15 0.38 -2.19 16 2 C 0.12 2.12 6.40 -4.05 -0.03 2.09 16 3 N -0.99 -21.31 2.83 -115.67 -0.33 -21.64 16 4 C 0.26 6.77 5.10 -5.20 -0.03 6.74 16 5 C -0.53 -15.27 9.38 -34.44 -0.32 -15.59 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 13 S 2.79 57.59 6.31 -107.50 -0.68 56.92 16 14 O -0.99 -20.93 16.28 -57.17 -0.93 -21.86 16 15 O -0.96 -23.62 16.69 -57.17 -0.95 -24.58 16 16 N -1.02 -16.05 3.75 -111.41 -0.42 -16.47 16 17 C 0.12 1.43 6.76 -2.53 -0.02 1.41 16 18 C -0.12 -1.15 6.52 -24.58 -0.16 -1.31 16 19 C -0.01 -0.13 3.31 -89.93 -0.30 -0.42 16 20 H 0.10 0.69 7.01 -51.93 -0.36 0.33 16 21 C 0.18 2.25 6.58 -154.99 -1.02 1.24 16 22 N -0.27 -4.48 11.89 32.80 0.39 -4.09 16 23 N -0.29 -4.48 12.21 29.69 0.36 -4.11 16 24 C 0.14 1.45 12.74 -89.94 -1.15 0.30 16 25 N -0.48 -4.27 3.15 -122.68 -0.39 -4.66 16 26 C 0.07 0.25 10.91 59.85 0.65 0.91 16 27 C 0.14 1.99 6.59 -3.06 -0.02 1.97 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.66 6.06 -51.93 -0.31 0.35 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 32 H 0.07 1.26 6.91 -51.92 -0.36 0.90 16 33 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 0.91 6.34 -51.93 -0.33 0.58 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.08 7.97 -51.93 -0.41 0.67 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.22 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 43 H 0.09 0.21 7.24 -51.93 -0.38 -0.17 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.46 7.61 -51.93 -0.40 1.07 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -39.28 381.39 -10.30 -49.58 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -6.72 Total: -2.87 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.10 Total: -3.13 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: 0.36 Total: -77.21 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -1.88 Total: -46.44 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 57.59 SS G_CDS: -0.68 Total: 56.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.28 -10.30 -49.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364915440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.616 kcal (2) G-P(sol) polarization free energy of solvation -39.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds