Wall clock time and date at job start Wed Apr 1 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47576 * 2 1 4 4 C 1.46499 * 120.00117 * 275.00135 * 3 2 1 5 5 C 1.50697 * 109.47343 * 274.99777 * 4 3 2 6 6 H 1.08007 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00114 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99852 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47032 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46894 * 119.99709 * 9 7 5 12 12 H 1.48495 * 109.46965 * 239.99561 * 9 7 5 13 13 S 1.65608 * 120.00164 * 94.99746 * 3 2 1 14 14 O 1.42104 * 106.39724 * 23.54333 * 13 3 2 15 15 O 1.42097 * 106.40199 * 156.46245 * 13 3 2 16 16 N 1.65601 * 107.21642 * 270.00708 * 13 3 2 17 17 C 1.47417 * 125.65236 * 90.02509 * 16 13 3 18 18 C 1.54911 * 104.83420 * 204.09044 * 17 16 13 19 19 C 1.55160 * 101.57801 * 322.98696 * 18 17 16 20 20 H 1.08998 * 110.72102 * 276.96219 * 19 18 17 21 21 C 1.50704 * 110.71608 * 153.86430 * 19 18 17 22 22 N 1.30520 * 126.35104 * 301.47964 * 21 19 18 23 23 N 1.28590 * 109.67672 * 179.97438 * 22 21 19 24 24 C 1.30527 * 109.67138 * 359.97438 * 23 22 21 25 25 N 1.35490 * 107.30411 * 359.77896 * 24 23 22 26 26 C 1.46500 * 126.97778 * 180.22504 * 25 24 23 27 27 C 1.47022 * 125.64349 * 269.70953 * 16 13 3 28 28 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47042 * 300.00192 * 1 2 3 30 30 H 1.09003 * 109.47051 * 59.99643 * 1 2 3 31 31 H 1.09006 * 109.47477 * 239.99894 * 2 1 3 32 32 H 1.09009 * 109.47079 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.47068 * 34.99758 * 4 3 2 34 34 H 1.09001 * 109.47179 * 154.99399 * 4 3 2 35 35 H 0.97002 * 119.99991 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.36409 * 322.92717 * 17 16 13 37 37 H 1.09005 * 110.37081 * 85.13850 * 17 16 13 38 38 H 1.08998 * 111.00705 * 81.05995 * 18 17 16 39 39 H 1.09000 * 111.00601 * 204.87754 * 18 17 16 40 40 H 1.07998 * 126.34573 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.47387 * 270.15316 * 26 25 24 42 42 H 1.09005 * 109.47286 * 30.15243 * 26 25 24 43 43 H 1.09003 * 109.47476 * 150.15164 * 26 25 24 44 44 H 1.08995 * 109.88774 * 298.39711 * 27 16 13 45 45 H 1.09004 * 109.88353 * 59.56518 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1116 -1.3835 7 6 3.8530 2.3613 -3.0843 8 7 3.0281 3.1863 -3.6914 9 14 5.5100 1.9653 -3.8505 10 1 6.2463 1.0181 -2.9754 11 1 5.3033 1.3481 -5.1854 12 1 6.2977 3.2152 -3.9997 13 16 2.4122 2.1202 1.4287 14 8 2.7095 1.0798 2.3499 15 8 3.3284 3.1570 1.1050 16 7 1.0431 2.8642 1.9895 17 6 0.0365 2.2549 2.8775 18 6 -1.2645 3.0513 2.6076 19 6 -0.7136 4.4872 2.4019 20 1 -0.5579 4.9816 3.3607 21 6 -1.6422 5.2949 1.5322 22 7 -2.0115 5.0031 0.3148 23 7 -2.8087 5.9110 -0.1252 24 6 -2.9846 6.8232 0.7916 25 7 -2.2536 6.4555 1.8715 26 6 -2.1437 7.1696 3.1459 27 6 0.6336 4.2439 1.6893 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.3618 1.8097 -1.9453 34 1 2.0922 3.1802 -1.0756 35 1 3.2800 3.5888 -4.5373 36 1 -0.1036 1.2033 2.6269 37 1 0.3375 2.3588 3.9200 38 1 -1.7633 2.6916 1.7077 39 1 -1.9342 3.0086 3.4666 40 1 -3.6020 7.7053 0.7068 41 1 -1.3147 7.8756 3.0966 42 1 -3.0701 7.7101 3.3407 43 1 -1.9647 6.4546 3.9489 44 1 1.3832 4.9424 2.0611 45 1 0.5096 4.3681 0.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364915440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:02 Heat of formation + Delta-G solvation = -12.764513 kcal Electronic energy + Delta-G solvation = -29591.346907 eV Core-core repulsion = 25578.473181 eV Total energy + Delta-G solvation = -4012.873726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.08594 -39.55993 -38.36186 -37.69190 -36.90577 -35.95673 -34.74398 -33.39345 -31.58951 -30.81573 -29.57187 -28.53356 -28.33098 -24.98075 -24.47116 -23.51185 -23.15293 -22.91385 -20.99937 -19.95068 -19.11664 -18.51850 -18.36827 -17.96670 -17.43766 -17.18518 -16.81977 -16.33378 -15.98368 -15.64005 -15.22042 -14.98121 -14.71890 -14.69291 -14.45693 -14.23683 -13.97386 -13.82563 -13.60061 -13.44428 -13.40019 -13.23100 -13.08785 -12.82729 -12.79240 -12.76742 -12.63605 -12.49284 -12.33536 -12.25826 -12.17572 -11.89608 -11.74314 -11.62054 -11.21202 -11.03090 -10.63381 -10.27638 -10.02404 -9.79969 -8.21268 -6.35026 -0.42797 0.85817 1.36268 1.38372 1.50966 1.62274 1.90922 1.98421 2.37894 2.54264 3.07930 3.09885 3.26986 3.52361 3.68700 3.76950 3.93224 3.96338 4.02788 4.25907 4.29299 4.42088 4.44672 4.45517 4.48331 4.54763 4.64349 4.75701 4.79316 4.84525 4.88733 4.95665 4.99367 5.05409 5.11448 5.16166 5.20885 5.26772 5.38999 5.42401 5.55210 5.69755 5.95822 6.01902 6.08392 6.74236 7.34197 7.80014 8.86616 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.004037 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.672310 B = 6933.554902 C = 8055.139666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.998 5.998 4 C 0.282 3.718 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.278 1.278 13 S 2.805 3.195 14 O -0.997 6.997 15 O -1.008 7.008 16 N -1.017 6.017 17 C 0.111 3.889 18 C -0.106 4.106 19 C 0.000 4.000 20 H 0.147 0.853 21 C 0.181 3.819 22 N -0.337 5.337 23 N -0.357 5.357 24 C 0.162 3.838 25 N -0.471 5.471 26 C 0.059 3.941 27 C 0.130 3.870 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.019 0.981 34 H 0.005 0.995 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.262 0.738 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 6.073 20.663 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.838 5.838 4 C 0.158 3.842 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.204 1.204 13 S 2.816 3.184 14 O -0.981 6.981 15 O -0.992 6.992 16 N -0.858 5.858 17 C -0.013 4.013 18 C -0.146 4.146 19 C -0.022 4.022 20 H 0.165 0.835 21 C -0.089 4.089 22 N -0.177 5.177 23 N -0.196 5.196 24 C -0.126 4.126 25 N -0.161 5.161 26 C -0.081 4.081 27 C 0.003 3.997 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.146 0.854 40 H 0.278 0.722 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.899 5.411 19.597 25.206 hybrid contribution 0.729 0.874 -0.383 1.201 sum -14.169 6.285 19.215 24.688 Atomic orbital electron populations 1.22214 0.94655 1.03285 1.01962 1.21394 0.95314 0.81386 1.03565 1.57713 1.81419 1.22700 1.21973 1.18433 0.95701 0.89724 0.80370 1.21859 1.03091 1.27711 1.06121 0.92751 1.25827 1.01143 0.94594 0.97401 1.70064 1.37879 1.31035 1.17605 0.85472 0.79253 0.78278 0.78498 1.19077 1.19382 1.20412 1.00962 0.72955 0.72235 0.72281 1.93498 1.83705 1.57649 1.63276 1.93552 1.61631 1.59292 1.84718 1.58977 1.41678 1.22630 1.62530 1.22386 0.86382 0.97915 0.94591 1.22863 0.96689 0.90831 1.04173 1.20695 0.89085 0.95663 0.96716 0.83508 1.24703 1.00467 0.89139 0.94584 1.74220 1.12232 1.22255 1.08982 1.74200 1.15550 1.02546 1.27307 1.27250 0.99349 1.02693 0.83316 1.46468 1.34775 1.18708 1.16126 1.22607 1.06557 0.98411 0.80537 1.21658 0.96177 0.82408 0.99407 0.89031 0.91876 0.93931 0.90841 0.89224 0.96266 0.97674 0.92428 0.89938 0.88142 0.91540 0.85426 0.72219 0.88869 0.86017 0.87024 0.90364 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.11 4.00 6.40 86.38 0.55 4.55 16 3 N -1.00 -44.98 2.83 -519.85 -1.47 -46.44 16 4 C 0.28 15.65 5.10 85.63 0.44 16.09 16 5 C -0.55 -33.06 9.38 25.60 0.24 -32.82 16 6 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 9 Si 0.96 46.82 29.54 68.60 2.03 48.84 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 S 2.81 118.54 6.31 -56.49 -0.36 118.18 16 14 O -1.00 -41.56 16.28 -128.00 -2.08 -43.64 16 15 O -1.01 -51.94 16.69 -128.00 -2.14 -54.08 16 16 N -1.02 -31.81 3.75 -506.40 -1.90 -33.72 16 17 C 0.11 2.30 6.76 86.86 0.59 2.89 16 18 C -0.11 -1.79 6.52 31.99 0.21 -1.59 16 19 C 0.00 0.01 3.31 -10.34 -0.03 -0.03 16 20 H 0.15 1.34 7.01 -2.39 -0.02 1.33 16 21 C 0.18 4.27 6.58 137.98 0.91 5.17 16 22 N -0.34 -11.52 11.89 -50.15 -0.60 -12.11 16 23 N -0.36 -11.32 12.21 -59.99 -0.73 -12.05 16 24 C 0.16 3.04 12.74 180.11 2.30 5.33 16 25 N -0.47 -7.25 3.15 -542.06 -1.71 -8.95 16 26 C 0.06 0.16 10.91 127.77 1.39 1.56 16 27 C 0.13 3.87 6.59 86.73 0.57 4.45 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.67 6.06 -2.39 -0.01 1.66 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 2.83 8.11 -2.38 -0.02 2.81 16 32 H 0.09 3.00 6.91 -2.38 -0.02 2.99 16 33 H 0.02 1.11 8.11 -2.39 -0.02 1.10 16 34 H 0.01 0.32 7.61 -2.39 -0.02 0.30 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.08 1.67 6.34 -2.38 -0.02 1.66 16 37 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.07 1.51 7.97 -2.39 -0.02 1.49 16 39 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.26 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 42 H 0.12 -0.32 8.14 -2.38 -0.02 -0.34 16 43 H 0.11 -0.10 7.24 -2.39 -0.02 -0.11 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.04 1.52 7.61 -2.38 -0.02 1.50 16 Total: -1.00 -93.30 381.39 0.68 -92.61 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.99 Total: 6.57 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 8.36 Total: 2.54 kcal Atomic # 7 Polarization: -164.91 SS G_CDS: -6.12 Total: -171.02 kcal Atomic # 8 Polarization: -93.50 SS G_CDS: -4.22 Total: -97.72 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 118.54 SS G_CDS: -0.36 Total: 118.18 kcal Total: -93.30 0.68 -92.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364915440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.848 kcal (2) G-P(sol) polarization free energy of solvation -93.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds