Wall clock time and date at job start Wed Apr 1 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00034 * 2 1 4 4 H 1.48492 * 109.47617 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46920 * 300.00355 * 3 2 1 6 6 H 1.48503 * 109.47208 * 59.99831 * 3 2 1 7 7 C 1.37879 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99728 * 274.99866 * 10 9 7 12 12 C 1.52995 * 109.46922 * 275.00258 * 11 10 9 13 13 C 1.53004 * 117.49707 * 243.74768 * 12 11 10 14 14 C 1.53001 * 117.49976 * 175.09006 * 12 11 10 15 15 S 1.65595 * 120.00375 * 94.99982 * 10 9 7 16 16 O 1.42093 * 104.27935 * 153.92575 * 15 10 9 17 17 O 1.42105 * 104.27413 * 26.06626 * 15 10 9 18 18 C 1.81401 * 104.44822 * 270.00044 * 15 10 9 19 19 C 1.52997 * 109.47149 * 179.97438 * 18 15 10 20 20 H 1.09000 * 109.87124 * 58.98668 * 19 18 15 21 21 C 1.54409 * 109.88337 * 179.97438 * 19 18 15 22 22 C 1.53482 * 103.78073 * 122.21505 * 21 19 18 23 23 C 1.52378 * 116.30682 * 250.78612 * 22 21 19 24 24 C 1.54041 * 86.63263 * 216.51966 * 23 22 21 25 25 C 1.52378 * 116.32079 * 148.47110 * 22 21 19 26 26 C 1.53665 * 103.67485 * 19.61664 * 22 21 19 27 27 O 1.43856 * 109.87913 * 297.82947 * 19 18 15 28 28 H 0.96998 * 120.00553 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47291 * 59.99780 * 9 7 2 30 30 H 1.08997 * 109.47113 * 300.00045 * 9 7 2 31 31 H 1.08999 * 109.47243 * 34.99985 * 11 10 9 32 32 H 1.08993 * 109.46936 * 155.00434 * 11 10 9 33 33 H 1.08996 * 115.55456 * 29.41599 * 12 11 10 34 34 H 1.08999 * 117.50031 * 359.97438 * 13 12 11 35 35 H 1.09001 * 117.49970 * 145.02107 * 13 12 11 36 36 H 1.08995 * 117.50317 * 214.97847 * 14 12 11 37 37 H 1.09001 * 117.49407 * 359.97176 * 14 12 11 38 38 H 1.09002 * 109.47085 * 299.99812 * 18 15 10 39 39 H 1.09001 * 109.47417 * 59.99938 * 18 15 10 40 40 H 1.09000 * 110.56581 * 240.79449 * 21 19 18 41 41 H 1.08998 * 110.55889 * 3.64065 * 21 19 18 42 42 H 1.09001 * 113.68895 * 330.95217 * 23 22 21 43 43 H 1.09003 * 113.68476 * 102.08961 * 23 22 21 44 44 H 1.09001 * 113.56789 * 269.75739 * 24 23 22 45 45 H 1.09004 * 113.57039 * 138.99751 * 24 23 22 46 46 H 1.08993 * 113.68471 * 257.90078 * 25 22 21 47 47 H 1.08997 * 113.68546 * 28.93952 * 25 22 21 48 48 H 1.08999 * 110.64555 * 83.05674 * 26 22 21 49 49 H 1.09007 * 110.63659 * 205.95178 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7643 -4.0980 -1.2616 12 6 1.8050 -5.1110 -1.8897 13 6 2.3005 -6.5502 -2.0461 14 6 2.1574 -5.6515 -3.2770 15 16 2.6453 -4.3226 1.4310 16 8 3.0182 -5.6440 1.0653 17 8 1.5430 -4.0851 2.2958 18 6 4.0960 -3.3793 1.9753 19 6 4.6039 -3.9455 3.3028 20 1 4.8648 -4.9969 3.1815 21 6 5.8399 -3.1494 3.7747 22 6 5.4313 -2.6265 5.1587 23 6 5.1723 -1.1287 5.2652 24 6 5.8051 -1.2111 6.6672 25 6 6.5523 -2.4662 6.1783 26 6 4.2698 -3.5464 5.5663 27 8 3.5912 -3.8035 4.3146 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 2.9041 -3.2591 -1.9432 32 1 3.7251 -4.5765 -1.0723 33 1 0.7497 -4.9643 -1.6599 34 1 3.3100 -6.7751 -1.7019 35 1 1.5711 -7.3502 -1.9196 36 1 1.3340 -5.8607 -3.9598 37 1 3.0724 -5.2850 -3.7424 38 1 4.8815 -3.4548 1.2234 39 1 3.8202 -2.3332 2.1087 40 1 6.7089 -3.8027 3.8534 41 1 6.0430 -2.3204 3.0968 42 1 5.7499 -0.5330 4.5584 43 1 4.1142 -0.8671 5.2771 44 1 5.0844 -1.4138 7.4595 45 1 6.4639 -0.3738 6.8980 46 1 6.5912 -3.2678 6.9159 47 1 7.5234 -2.2533 5.7316 48 1 4.6471 -4.4743 5.9961 49 1 3.6074 -3.0405 6.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365036442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:17 Heat of formation + Delta-G solvation = -72.214665 kcal Electronic energy + Delta-G solvation = -29785.157244 eV Core-core repulsion = 25840.953158 eV Total energy + Delta-G solvation = -3944.204086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.68687 -37.50126 -37.15952 -36.32887 -35.15446 -34.71622 -32.39597 -32.29044 -29.51935 -27.78875 -26.24079 -25.93139 -25.35195 -23.05600 -22.47317 -21.96209 -21.20311 -20.17553 -18.84849 -18.11379 -17.01979 -16.61721 -16.28466 -16.15160 -15.80878 -15.45878 -15.27415 -14.81360 -14.74153 -14.42097 -13.98911 -13.84307 -13.45653 -13.37442 -12.78218 -12.55809 -12.50263 -12.30264 -12.19511 -11.79822 -11.72094 -11.70682 -11.43585 -11.30307 -11.25680 -11.19987 -11.12786 -11.07328 -10.78327 -10.71426 -10.49164 -10.46154 -10.31228 -10.15174 -10.06108 -9.91325 -9.69923 -9.62346 -9.41944 -8.48942 -7.97107 -6.10330 -4.17545 1.00683 3.23154 3.30594 3.32374 3.45653 3.68130 4.16902 4.21581 4.33858 4.35729 4.43306 4.55733 4.65744 4.73418 4.86324 4.90412 5.08853 5.13358 5.16314 5.23322 5.28051 5.35224 5.37495 5.45561 5.50586 5.56923 5.60892 5.64348 5.68134 5.70900 5.74952 5.83487 5.90477 5.94716 6.00793 6.13259 6.16185 6.21699 6.24211 6.24665 6.44127 6.58763 6.75336 6.80105 7.40600 7.47095 7.70982 7.86656 8.16194 8.86814 9.48458 10.97595 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.004821 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.793910 B = 5806.224802 C = 8125.250606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.243 3.757 10 N -0.984 5.984 11 C 0.164 3.836 12 C -0.162 4.162 13 C -0.173 4.173 14 C -0.183 4.183 15 S 2.615 3.385 16 O -0.974 6.974 17 O -0.940 6.940 18 C -0.639 4.639 19 C 0.088 3.912 20 H 0.079 0.921 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.124 4.124 26 C 0.070 3.930 27 O -0.361 6.361 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.207 -6.573 6.410 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.121 3.879 10 N -0.821 5.821 11 C 0.037 3.963 12 C -0.182 4.182 13 C -0.210 4.210 14 C -0.221 4.221 15 S 2.706 3.294 16 O -0.965 6.965 17 O -0.930 6.930 18 C -0.766 4.766 19 C 0.029 3.971 20 H 0.097 0.903 21 C -0.168 4.168 22 C -0.119 4.119 23 C -0.164 4.164 24 C -0.179 4.179 25 C -0.161 4.161 26 C -0.006 4.006 27 O -0.280 6.280 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.375 -7.168 6.783 15.828 hybrid contribution 1.133 1.673 -0.256 2.036 sum 13.507 -5.495 6.527 15.977 Atomic orbital electron populations 1.69939 1.05993 1.27000 1.49498 1.24942 0.94799 0.99116 0.94902 0.86564 0.79978 0.83813 0.77781 1.19779 1.20874 1.20834 1.21598 0.93446 0.90988 1.52286 0.92117 1.19231 0.87455 0.81452 0.99778 1.57465 1.57032 1.49152 1.18498 1.20596 0.93597 0.95742 0.86334 1.22832 1.01357 0.95369 0.98600 1.22971 1.02668 0.93832 1.01514 1.22928 1.02973 1.05127 0.91079 1.04761 0.76211 0.74436 0.73952 1.93518 1.85471 1.34780 1.82717 1.93571 1.47476 1.85810 1.66164 1.30934 1.23045 1.18022 1.04550 1.22366 0.88808 0.98783 0.87181 0.90346 1.22807 0.97273 1.00487 0.96257 1.22499 0.97002 0.97081 0.95311 1.22783 1.02300 0.94303 0.97007 1.22931 0.99664 0.98022 0.97287 1.22696 0.97226 0.98462 0.97738 1.23188 0.92902 0.97197 0.87340 1.89125 1.29251 1.92709 1.16922 0.92616 0.94233 0.92702 0.89765 0.91755 0.87473 0.88635 0.89449 0.89246 0.89039 0.84886 0.83312 0.90169 0.89539 0.89673 0.90387 0.90090 0.91406 0.91164 0.89775 0.91680 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.17 9.38 -34.44 -0.32 -14.49 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.24 6.08 5.41 -5.19 -0.03 6.05 16 10 N -0.98 -20.46 2.70 -115.66 -0.31 -20.78 16 11 C 0.16 2.90 5.54 -4.04 -0.02 2.88 16 12 C -0.16 -2.72 6.01 -90.62 -0.54 -3.26 16 13 C -0.17 -2.57 10.18 -26.69 -0.27 -2.84 16 14 C -0.18 -2.49 10.25 -26.69 -0.27 -2.76 16 15 S 2.61 52.77 5.20 -107.50 -0.56 52.21 16 16 O -0.97 -19.78 16.99 -57.54 -0.98 -20.76 16 17 O -0.94 -22.85 15.96 -60.85 -0.97 -23.82 16 18 C -0.64 -10.43 5.69 37.16 0.21 -10.22 16 19 C 0.09 1.30 3.48 -25.99 -0.09 1.21 16 20 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 21 C -0.13 -1.50 6.11 -25.74 -0.16 -1.66 16 22 C -0.12 -1.31 1.05 -154.59 -0.16 -1.47 16 23 C -0.13 -1.43 7.34 -26.51 -0.19 -1.63 16 24 C -0.14 -1.25 7.98 -25.68 -0.20 -1.46 16 25 C -0.12 -1.05 7.42 -26.51 -0.20 -1.25 16 26 C 0.07 0.87 6.95 37.50 0.26 1.13 16 27 O -0.36 -6.12 10.39 -38.49 -0.40 -6.52 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.06 1.53 6.81 -51.93 -0.35 1.17 16 31 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.06 0.99 7.34 -51.93 -0.38 0.61 16 33 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 34 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.15 2.63 8.14 -51.92 -0.42 2.21 16 40 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.09 0.99 7.47 -51.93 -0.39 0.61 16 42 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 43 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.10 1.11 8.07 -51.93 -0.42 0.70 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -32.66 405.64 -12.16 -44.82 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.68 Total: 5.96 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.09 Total: -28.09 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.42 Total: -45.48 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -2.35 Total: -51.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 52.77 SS G_CDS: -0.56 Total: 52.21 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.66 -12.16 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365036442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.391 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds