Wall clock time and date at job start Wed Apr 1 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00034 * 2 1 4 4 H 1.48492 * 109.47617 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46920 * 300.00355 * 3 2 1 6 6 H 1.48503 * 109.47208 * 59.99831 * 3 2 1 7 7 C 1.37879 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99728 * 274.99866 * 10 9 7 12 12 C 1.52995 * 109.46922 * 275.00258 * 11 10 9 13 13 C 1.53004 * 117.49707 * 243.74768 * 12 11 10 14 14 C 1.53001 * 117.49976 * 175.09006 * 12 11 10 15 15 S 1.65595 * 120.00375 * 94.99982 * 10 9 7 16 16 O 1.42093 * 104.27935 * 153.92575 * 15 10 9 17 17 O 1.42105 * 104.27413 * 26.06626 * 15 10 9 18 18 C 1.81401 * 104.44822 * 270.00044 * 15 10 9 19 19 C 1.52997 * 109.47149 * 179.97438 * 18 15 10 20 20 H 1.09000 * 109.87124 * 58.98668 * 19 18 15 21 21 C 1.54409 * 109.88337 * 179.97438 * 19 18 15 22 22 C 1.53482 * 103.78073 * 122.21505 * 21 19 18 23 23 C 1.52378 * 116.30682 * 250.78612 * 22 21 19 24 24 C 1.54041 * 86.63263 * 216.51966 * 23 22 21 25 25 C 1.52378 * 116.32079 * 148.47110 * 22 21 19 26 26 C 1.53665 * 103.67485 * 19.61664 * 22 21 19 27 27 O 1.43856 * 109.87913 * 297.82947 * 19 18 15 28 28 H 0.96998 * 120.00553 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47291 * 59.99780 * 9 7 2 30 30 H 1.08997 * 109.47113 * 300.00045 * 9 7 2 31 31 H 1.08999 * 109.47243 * 34.99985 * 11 10 9 32 32 H 1.08993 * 109.46936 * 155.00434 * 11 10 9 33 33 H 1.08996 * 115.55456 * 29.41599 * 12 11 10 34 34 H 1.08999 * 117.50031 * 359.97438 * 13 12 11 35 35 H 1.09001 * 117.49970 * 145.02107 * 13 12 11 36 36 H 1.08995 * 117.50317 * 214.97847 * 14 12 11 37 37 H 1.09001 * 117.49407 * 359.97176 * 14 12 11 38 38 H 1.09002 * 109.47085 * 299.99812 * 18 15 10 39 39 H 1.09001 * 109.47417 * 59.99938 * 18 15 10 40 40 H 1.09000 * 110.56581 * 240.79449 * 21 19 18 41 41 H 1.08998 * 110.55889 * 3.64065 * 21 19 18 42 42 H 1.09001 * 113.68895 * 330.95217 * 23 22 21 43 43 H 1.09003 * 113.68476 * 102.08961 * 23 22 21 44 44 H 1.09001 * 113.56789 * 269.75739 * 24 23 22 45 45 H 1.09004 * 113.57039 * 138.99751 * 24 23 22 46 46 H 1.08993 * 113.68471 * 257.90078 * 25 22 21 47 47 H 1.08997 * 113.68546 * 28.93952 * 25 22 21 48 48 H 1.08999 * 110.64555 * 83.05674 * 26 22 21 49 49 H 1.09007 * 110.63659 * 205.95178 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.7643 -4.0980 -1.2616 12 6 1.8050 -5.1110 -1.8897 13 6 2.3005 -6.5502 -2.0461 14 6 2.1574 -5.6515 -3.2770 15 16 2.6453 -4.3226 1.4310 16 8 3.0182 -5.6440 1.0653 17 8 1.5430 -4.0851 2.2958 18 6 4.0960 -3.3793 1.9753 19 6 4.6039 -3.9455 3.3028 20 1 4.8648 -4.9969 3.1815 21 6 5.8399 -3.1494 3.7747 22 6 5.4313 -2.6265 5.1587 23 6 5.1723 -1.1287 5.2652 24 6 5.8051 -1.2111 6.6672 25 6 6.5523 -2.4662 6.1783 26 6 4.2698 -3.5464 5.5663 27 8 3.5912 -3.8035 4.3146 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 2.9041 -3.2591 -1.9432 32 1 3.7251 -4.5765 -1.0723 33 1 0.7497 -4.9643 -1.6599 34 1 3.3100 -6.7751 -1.7019 35 1 1.5711 -7.3502 -1.9196 36 1 1.3340 -5.8607 -3.9598 37 1 3.0724 -5.2850 -3.7424 38 1 4.8815 -3.4548 1.2234 39 1 3.8202 -2.3332 2.1087 40 1 6.7089 -3.8027 3.8534 41 1 6.0430 -2.3204 3.0968 42 1 5.7499 -0.5330 4.5584 43 1 4.1142 -0.8671 5.2771 44 1 5.0844 -1.4138 7.4595 45 1 6.4639 -0.3738 6.8980 46 1 6.5912 -3.2678 6.9159 47 1 7.5234 -2.2533 5.7316 48 1 4.6471 -4.4743 5.9961 49 1 3.6074 -3.0405 6.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365036442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:16 Heat of formation + Delta-G solvation = -92.635886 kcal Electronic energy + Delta-G solvation = -29786.042774 eV Core-core repulsion = 25840.953158 eV Total energy + Delta-G solvation = -3945.089616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59797 -38.85550 -38.12448 -38.02001 -36.84393 -36.38286 -34.36129 -33.46945 -30.47699 -29.63079 -27.34475 -27.00032 -26.67256 -24.43495 -23.83362 -23.10794 -22.26873 -21.54093 -19.85167 -19.58196 -18.60047 -18.50170 -17.73616 -17.44805 -17.03362 -16.67870 -16.36466 -16.29717 -16.03705 -15.81106 -15.37677 -15.01992 -14.81363 -14.40895 -14.23875 -13.93958 -13.71380 -13.63733 -13.44502 -13.21390 -13.08495 -13.01046 -12.90772 -12.87304 -12.83252 -12.56644 -12.47662 -12.35409 -12.26485 -12.10413 -11.95114 -11.78165 -11.62139 -11.35238 -11.19598 -11.12535 -11.00303 -10.75334 -10.69800 -10.58617 -9.68422 -8.17212 -6.32491 -0.57315 1.41315 1.42122 1.53583 1.85127 2.41037 2.66135 2.95511 2.99715 3.14195 3.28236 3.34069 3.53240 3.60897 3.74861 3.86963 3.91237 3.95124 3.97171 4.03457 4.11142 4.24395 4.36232 4.37143 4.44461 4.50651 4.61545 4.70242 4.74887 4.83751 4.84864 4.86911 4.89185 4.91255 5.04604 5.06185 5.10266 5.10654 5.16180 5.30400 5.34061 5.35211 5.36853 5.50896 5.51670 5.76044 5.78258 5.96826 6.09119 6.80507 7.38148 8.91419 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.004821 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.793910 B = 5806.224802 C = 8125.250606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.960 3.040 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.261 3.739 10 N -0.990 5.990 11 C 0.159 3.841 12 C -0.198 4.198 13 C -0.171 4.171 14 C -0.155 4.155 15 S 2.609 3.391 16 O -0.980 6.980 17 O -0.995 6.995 18 C -0.615 4.615 19 C 0.075 3.925 20 H 0.094 0.906 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.108 4.108 26 C 0.059 3.941 27 O -0.405 6.405 28 H 0.265 0.735 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.173 0.827 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.517 -6.540 6.324 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.096 0.904 9 C 0.137 3.863 10 N -0.827 5.827 11 C 0.033 3.967 12 C -0.218 4.218 13 C -0.208 4.208 14 C -0.193 4.193 15 S 2.706 3.294 16 O -0.970 6.970 17 O -0.985 6.985 18 C -0.747 4.747 19 C 0.016 3.984 20 H 0.112 0.888 21 C -0.162 4.162 22 C -0.122 4.122 23 C -0.179 4.179 24 C -0.173 4.173 25 C -0.145 4.145 26 C -0.016 4.016 27 O -0.325 6.325 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.190 0.810 39 H 0.154 0.846 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.106 0.894 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.666 -7.185 6.667 19.335 hybrid contribution -0.236 1.587 -0.199 1.617 sum 16.430 -5.598 6.468 18.524 Atomic orbital electron populations 1.70092 1.07917 1.27975 1.50980 1.25890 0.95585 1.03097 0.94579 0.85476 0.79578 0.78946 0.77542 1.17630 1.20460 1.21048 1.21940 0.94252 0.91148 1.51150 0.90428 1.18684 0.87771 0.83082 0.96736 1.57305 1.57091 1.48005 1.20261 1.20839 0.94756 0.96101 0.84977 1.22759 0.99846 0.96962 1.02221 1.23050 1.02902 0.92633 1.02212 1.23050 1.04047 1.02406 0.89782 1.04698 0.76878 0.74713 0.73137 1.93493 1.85588 1.35329 1.82607 1.93505 1.51131 1.86538 1.67370 1.30720 1.21112 1.15855 1.06992 1.22683 0.89692 1.00202 0.85820 0.88810 1.22853 0.96526 1.00661 0.96163 1.22524 0.97499 0.96158 0.95975 1.22879 1.00869 0.94981 0.99138 1.22918 0.99703 0.98947 0.95743 1.22672 0.96705 0.98321 0.96847 1.23462 0.93429 0.98750 0.85987 1.89098 1.31442 1.93018 1.18912 0.92599 0.96541 0.96805 0.89773 0.88988 0.90332 0.87946 0.89171 0.88035 0.86863 0.80963 0.84602 0.87021 0.89282 0.89399 0.93191 0.89919 0.90247 0.89672 0.88214 0.89442 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.96 42.20 29.54 68.60 2.03 44.23 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.55 -28.94 9.38 25.60 0.24 -28.70 16 8 H 0.08 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.26 13.82 5.41 85.63 0.46 14.28 16 10 N -0.99 -42.41 2.70 -519.85 -1.40 -43.81 16 11 C 0.16 5.56 5.54 86.38 0.48 6.03 16 12 C -0.20 -6.70 6.01 -10.79 -0.06 -6.77 16 13 C -0.17 -4.87 10.18 30.62 0.31 -4.56 16 14 C -0.16 -3.92 10.25 30.62 0.31 -3.61 16 15 S 2.61 107.64 5.20 -56.49 -0.29 107.34 16 16 O -0.98 -39.67 16.99 -127.65 -2.17 -41.83 16 17 O -0.99 -51.54 15.96 -124.48 -1.99 -53.53 16 18 C -0.62 -19.31 5.69 71.98 0.41 -18.90 16 19 C 0.08 2.09 3.48 31.07 0.11 2.20 16 20 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 21 C -0.12 -2.45 6.11 31.23 0.19 -2.26 16 22 C -0.12 -2.40 1.05 -52.23 -0.05 -2.46 16 23 C -0.14 -3.03 7.34 30.74 0.23 -2.80 16 24 C -0.14 -2.08 7.98 31.27 0.25 -1.83 16 25 C -0.11 -1.44 7.42 30.74 0.23 -1.21 16 26 C 0.06 1.42 6.95 72.21 0.50 1.92 16 27 O -0.40 -13.79 10.39 -145.86 -1.52 -15.30 16 28 H 0.27 14.87 8.31 -92.71 -0.77 14.09 16 29 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 30 H 0.01 0.84 6.81 -2.39 -0.02 0.83 16 31 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 32 H 0.09 2.65 7.34 -2.39 -0.02 2.64 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.10 2.77 8.03 -2.39 -0.02 2.75 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.17 3.95 8.14 -2.39 -0.02 3.93 16 39 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 40 H 0.11 1.53 8.10 -2.39 -0.02 1.51 16 41 H 0.09 1.73 7.47 -2.39 -0.02 1.71 16 42 H 0.09 1.80 8.04 -2.39 -0.02 1.78 16 43 H 0.05 1.32 8.12 -2.39 -0.02 1.30 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.09 2.20 8.07 -2.38 -0.02 2.18 16 Total: -1.00 -75.16 405.64 -0.09 -75.24 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.91 Total: 30.59 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 4.06 Total: -47.78 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -1.12 Total: -98.97 kcal Atomic # 8 Polarization: -104.99 SS G_CDS: -5.67 Total: -110.66 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 107.64 SS G_CDS: -0.29 Total: 107.34 kcal Total: -75.16 -0.09 -75.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365036442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.392 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds