Wall clock time and date at job start Wed Apr 1 2020 02:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00659 * 2 1 4 4 H 1.48495 * 109.47386 * 270.00573 * 3 2 1 5 5 H 1.48505 * 109.46474 * 30.00174 * 3 2 1 6 6 H 1.48494 * 109.47102 * 149.99792 * 3 2 1 7 7 C 1.37881 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99624 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00528 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47368 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47222 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47163 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47308 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99682 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00543 * 180.02562 * 13 12 11 16 16 C 1.48054 * 122.89724 * 180.02562 * 15 13 12 17 17 C 1.44160 * 112.66448 * 89.72084 * 16 15 13 18 18 C 1.54634 * 110.01432 * 58.07780 * 17 16 15 19 19 C 1.53274 * 112.68577 * 150.99561 * 18 17 16 20 20 C 1.53874 * 86.93111 * 221.23707 * 19 18 17 21 21 C 1.53285 * 112.66847 * 53.79214 * 18 17 16 22 22 S 1.78258 * 111.40894 * 282.29503 * 18 17 16 23 23 O 1.42102 * 107.96945 * 336.14178 * 22 18 17 24 24 O 1.42096 * 107.86413 * 206.81812 * 22 18 17 25 25 C 1.83741 * 105.86690 * 91.50471 * 22 18 17 26 26 C 1.42609 * 122.89188 * 359.96464 * 15 13 12 27 27 H 0.97008 * 119.99575 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46634 * 59.99956 * 9 7 2 29 29 H 1.09003 * 109.47100 * 300.00364 * 9 7 2 30 30 H 1.09000 * 109.47517 * 60.00100 * 10 9 7 31 31 H 1.09003 * 109.47419 * 300.00305 * 10 9 7 32 32 H 1.09005 * 109.46717 * 60.00130 * 11 10 9 33 33 H 1.08994 * 109.47340 * 300.00455 * 11 10 9 34 34 H 1.09005 * 109.46915 * 60.00598 * 12 11 10 35 35 H 1.08994 * 109.47647 * 300.00613 * 12 11 10 36 36 H 1.09005 * 108.84614 * 328.90011 * 16 15 13 37 37 H 1.08997 * 108.76413 * 210.48612 * 16 15 13 38 38 H 1.09002 * 109.36433 * 178.21448 * 17 16 15 39 39 H 1.08998 * 109.36408 * 297.94766 * 17 16 15 40 40 H 1.09005 * 113.64097 * 335.74224 * 19 18 17 41 41 H 1.09001 * 113.64337 * 106.72907 * 19 18 17 42 42 H 1.09001 * 113.60355 * 270.48116 * 20 19 18 43 43 H 1.09010 * 113.67613 * 139.64100 * 20 19 18 44 44 H 1.08996 * 113.63643 * 253.29002 * 21 18 17 45 45 H 1.08999 * 113.64113 * 24.17926 * 21 18 17 46 46 H 1.08995 * 109.84406 * 202.23706 * 25 22 18 47 47 H 1.08998 * 109.89567 * 81.29034 * 25 22 18 48 48 H 1.09002 * 108.89633 * 48.23955 * 26 15 13 49 49 H 1.08998 * 108.90078 * 166.73178 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6369 -0.0009 12 6 6.0612 -4.0794 -0.0002 13 6 7.5682 -4.0796 -0.0008 14 8 8.1747 -3.0292 -0.0012 15 7 8.2420 -5.2467 -0.0008 16 6 9.7207 -5.3216 -0.0008 17 6 10.2758 -5.3432 1.3295 18 6 9.7093 -6.5455 2.1199 19 6 10.6826 -7.0649 3.1839 20 6 10.2671 -8.4825 2.7533 21 6 9.9010 -7.8778 1.3866 22 16 8.0540 -6.2227 2.6974 23 8 7.8856 -4.8142 2.7807 24 8 7.8394 -7.0042 3.8646 25 6 6.9325 -6.8493 1.3837 26 6 7.5922 -6.5161 0.0005 27 1 -0.4850 0.8402 -0.0004 28 1 3.8751 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8911 30 1 3.6577 -3.1508 -0.8907 31 1 3.6583 -3.1504 0.8892 32 1 5.9147 -2.1230 0.8891 33 1 5.9148 -2.1231 -0.8908 34 1 5.6979 -4.5936 -0.8900 35 1 5.6978 -4.5928 0.8899 36 1 10.1170 -4.4572 -0.5336 37 1 10.0259 -6.2275 -0.5243 38 1 11.3605 -5.4305 1.2671 39 1 10.0168 -4.4180 1.8443 40 1 11.7263 -6.8322 2.9725 41 1 10.3899 -6.8145 4.2036 42 1 9.4095 -8.8716 3.3021 43 1 11.0971 -9.1878 2.7102 44 1 8.9808 -8.2799 0.9631 45 1 10.7268 -7.8702 0.6751 46 1 5.9629 -6.3574 1.4593 47 1 6.8090 -7.9276 1.4846 48 1 6.8192 -6.5178 -0.7680 49 1 8.3245 -7.2879 -0.2364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451539093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:20 Heat of formation + Delta-G solvation = -79.588011 kcal Electronic energy + Delta-G solvation = -29770.687382 eV Core-core repulsion = 25826.163565 eV Total energy + Delta-G solvation = -3944.523818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08573 -39.54276 -37.43841 -36.43884 -36.22917 -35.07185 -33.46577 -32.41393 -30.58272 -29.98014 -27.07562 -26.18181 -25.77715 -24.45238 -22.85778 -21.62241 -21.16794 -19.99555 -19.37110 -18.62598 -17.50103 -17.38528 -16.67100 -16.54044 -16.36668 -15.87474 -15.80440 -15.28108 -14.94679 -14.78618 -14.32261 -14.24060 -14.02675 -13.75560 -13.43005 -13.16315 -12.88613 -12.66905 -12.60469 -12.43484 -12.31571 -12.23877 -12.10386 -11.95891 -11.82204 -11.72695 -11.69737 -11.21300 -11.07760 -10.86760 -10.83598 -10.69100 -10.57382 -10.45729 -9.96329 -9.78335 -9.60125 -9.39923 -9.23219 -9.07956 -8.45754 -5.97189 -3.94318 -0.37172 2.42520 2.49905 2.64255 3.15013 3.36348 3.38512 3.45495 3.52716 3.67945 3.84451 3.97575 4.07027 4.13723 4.28577 4.39069 4.53800 4.59733 4.67496 4.81856 4.84456 4.99954 5.01384 5.04684 5.11054 5.14758 5.22566 5.24735 5.33619 5.35945 5.38472 5.38886 5.43088 5.66512 5.68635 5.78113 6.01019 6.07195 6.19424 6.45722 6.73308 6.86931 7.02788 7.12485 7.42523 7.55824 7.88519 8.06760 8.61888 9.07774 9.66465 11.16321 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.002577 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.014280 B =10861.442395 C =11190.679251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.108 4.108 12 C -0.140 4.140 13 C 0.536 3.464 14 O -0.511 6.511 15 N -0.638 5.638 16 C 0.101 3.899 17 C -0.107 4.107 18 C -0.601 4.601 19 C -0.087 4.087 20 C -0.154 4.154 21 C -0.105 4.105 22 S 2.441 3.559 23 O -0.920 6.920 24 O -0.944 6.944 25 C -0.626 4.626 26 C 0.111 3.889 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.094 0.906 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.085 -23.373 0.786 35.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.179 4.179 13 C 0.326 3.674 14 O -0.384 6.384 15 N -0.375 5.375 16 C -0.020 4.020 17 C -0.146 4.146 18 C -0.690 4.690 19 C -0.125 4.125 20 C -0.192 4.192 21 C -0.142 4.142 22 S 2.621 3.379 23 O -0.917 6.917 24 O -0.941 6.941 25 C -0.757 4.757 26 C -0.016 4.016 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.121 0.879 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.112 0.888 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 26.032 -22.208 1.536 34.253 hybrid contribution 0.453 0.448 -0.605 0.879 sum 26.485 -21.760 0.931 34.290 Atomic orbital electron populations 1.69923 1.06306 1.26790 1.51584 1.25040 0.94733 0.99226 0.94631 0.86775 0.80521 0.83541 0.78497 1.20353 1.21476 1.18814 1.21185 0.89668 0.94362 1.50411 0.91122 1.19579 0.96883 0.92475 0.96385 1.21480 0.91662 1.00015 1.00875 1.21515 0.97254 0.92631 1.03186 1.21885 0.89984 1.02194 1.03851 1.20918 0.90674 0.82048 0.73723 1.90689 1.70366 1.30435 1.46915 1.47874 1.06868 1.06008 1.76719 1.20206 0.79974 1.04337 0.97482 1.20463 1.01843 0.96284 0.96000 1.31912 1.22639 1.04584 1.09847 1.22451 0.98152 0.95357 0.96520 1.23143 1.03220 0.96857 0.95941 1.22810 1.03503 0.90328 0.97593 1.07502 0.77333 0.76182 0.76898 1.93626 1.84406 1.28381 1.85266 1.93539 1.84548 1.72499 1.43483 1.31724 1.16055 1.13422 1.14478 1.21362 0.99299 0.86651 0.94268 0.92850 0.96507 0.97038 0.92890 0.92822 0.91313 0.91716 0.88852 0.89146 0.88827 0.89915 0.88429 0.88572 0.88227 0.90046 0.88393 0.89949 0.90001 0.87880 0.83792 0.83783 0.88813 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.74 13.96 55.43 0.77 -27.96 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.02 -0.40 4.04 -27.89 -0.11 -0.51 16 10 C -0.10 -2.08 5.15 -26.73 -0.14 -2.22 16 11 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.14 -1.88 4.49 -27.89 -0.13 -2.01 16 13 C 0.54 7.36 6.27 -10.99 -0.07 7.29 16 14 O -0.51 -9.06 15.86 5.55 0.09 -8.97 16 15 N -0.64 -5.74 1.73 -177.77 -0.31 -6.04 16 16 C 0.10 0.69 5.02 -7.29 -0.04 0.65 16 17 C -0.11 -0.73 4.79 -29.98 -0.14 -0.88 16 18 C -0.60 -3.80 0.73 -89.47 -0.07 -3.86 16 19 C -0.09 -0.49 6.99 -26.13 -0.18 -0.67 16 20 C -0.15 -0.67 7.74 -25.82 -0.20 -0.87 16 21 C -0.10 -0.33 5.13 -26.13 -0.13 -0.46 16 22 S 2.44 24.07 4.47 -107.50 -0.48 23.59 16 23 O -0.92 -13.39 14.90 -57.92 -0.86 -14.25 16 24 O -0.94 -11.68 16.32 -57.92 -0.95 -12.62 16 25 C -0.63 -3.90 5.85 39.23 0.23 -3.67 16 26 C 0.11 0.60 4.75 -4.02 -0.02 0.58 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.09 1.00 7.72 -51.93 -0.40 0.60 16 35 H 0.09 1.11 6.09 -51.93 -0.32 0.79 16 36 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 37 H 0.08 0.26 6.18 -51.93 -0.32 -0.06 16 38 H 0.10 0.43 7.76 -51.93 -0.40 0.03 16 39 H 0.10 0.99 7.13 -51.93 -0.37 0.62 16 40 H 0.10 0.39 7.81 -51.93 -0.41 -0.02 16 41 H 0.08 0.57 7.80 -51.93 -0.41 0.17 16 42 H 0.10 0.52 7.39 -51.93 -0.38 0.14 16 43 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 44 H 0.08 0.12 5.12 -51.93 -0.27 -0.15 16 45 H 0.10 0.15 7.58 -51.93 -0.39 -0.24 16 46 H 0.14 0.96 6.37 -51.93 -0.33 0.63 16 47 H 0.14 0.43 7.95 -51.93 -0.41 0.01 16 48 H 0.09 0.42 7.47 -51.93 -0.39 0.03 16 49 H 0.10 0.21 4.54 -51.93 -0.24 -0.03 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -39.89 372.29 -10.23 -50.12 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -7.89 Total: -5.10 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -1.55 Total: -22.45 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.47 Total: -34.01 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.72 Total: -35.84 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Atomic # 16 Polarization: 24.07 SS G_CDS: -0.48 Total: 23.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.89 -10.23 -50.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451539093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.465 kcal (2) G-P(sol) polarization free energy of solvation -39.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds