Wall clock time and date at job start Wed Apr 1 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00659 * 2 1 4 4 H 1.48495 * 109.47386 * 270.00573 * 3 2 1 5 5 H 1.48505 * 109.46474 * 30.00174 * 3 2 1 6 6 H 1.48494 * 109.47102 * 149.99792 * 3 2 1 7 7 C 1.37881 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99624 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00528 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47368 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47222 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47163 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47308 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99682 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00543 * 180.02562 * 13 12 11 16 16 C 1.48054 * 122.89724 * 180.02562 * 15 13 12 17 17 C 1.44160 * 112.66448 * 89.72084 * 16 15 13 18 18 C 1.54634 * 110.01432 * 58.07780 * 17 16 15 19 19 C 1.53274 * 112.68577 * 150.99561 * 18 17 16 20 20 C 1.53874 * 86.93111 * 221.23707 * 19 18 17 21 21 C 1.53285 * 112.66847 * 53.79214 * 18 17 16 22 22 S 1.78258 * 111.40894 * 282.29503 * 18 17 16 23 23 O 1.42102 * 107.96945 * 336.14178 * 22 18 17 24 24 O 1.42096 * 107.86413 * 206.81812 * 22 18 17 25 25 C 1.83741 * 105.86690 * 91.50471 * 22 18 17 26 26 C 1.42609 * 122.89188 * 359.96464 * 15 13 12 27 27 H 0.97008 * 119.99575 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46634 * 59.99956 * 9 7 2 29 29 H 1.09003 * 109.47100 * 300.00364 * 9 7 2 30 30 H 1.09000 * 109.47517 * 60.00100 * 10 9 7 31 31 H 1.09003 * 109.47419 * 300.00305 * 10 9 7 32 32 H 1.09005 * 109.46717 * 60.00130 * 11 10 9 33 33 H 1.08994 * 109.47340 * 300.00455 * 11 10 9 34 34 H 1.09005 * 109.46915 * 60.00598 * 12 11 10 35 35 H 1.08994 * 109.47647 * 300.00613 * 12 11 10 36 36 H 1.09005 * 108.84614 * 328.90011 * 16 15 13 37 37 H 1.08997 * 108.76413 * 210.48612 * 16 15 13 38 38 H 1.09002 * 109.36433 * 178.21448 * 17 16 15 39 39 H 1.08998 * 109.36408 * 297.94766 * 17 16 15 40 40 H 1.09005 * 113.64097 * 335.74224 * 19 18 17 41 41 H 1.09001 * 113.64337 * 106.72907 * 19 18 17 42 42 H 1.09001 * 113.60355 * 270.48116 * 20 19 18 43 43 H 1.09010 * 113.67613 * 139.64100 * 20 19 18 44 44 H 1.08996 * 113.63643 * 253.29002 * 21 18 17 45 45 H 1.08999 * 113.64113 * 24.17926 * 21 18 17 46 46 H 1.08995 * 109.84406 * 202.23706 * 25 22 18 47 47 H 1.08998 * 109.89567 * 81.29034 * 25 22 18 48 48 H 1.09002 * 108.89633 * 48.23955 * 26 15 13 49 49 H 1.08998 * 108.90078 * 166.73178 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6369 -0.0009 12 6 6.0612 -4.0794 -0.0002 13 6 7.5682 -4.0796 -0.0008 14 8 8.1747 -3.0292 -0.0012 15 7 8.2420 -5.2467 -0.0008 16 6 9.7207 -5.3216 -0.0008 17 6 10.2758 -5.3432 1.3295 18 6 9.7093 -6.5455 2.1199 19 6 10.6826 -7.0649 3.1839 20 6 10.2671 -8.4825 2.7533 21 6 9.9010 -7.8778 1.3866 22 16 8.0540 -6.2227 2.6974 23 8 7.8856 -4.8142 2.7807 24 8 7.8394 -7.0042 3.8646 25 6 6.9325 -6.8493 1.3837 26 6 7.5922 -6.5161 0.0005 27 1 -0.4850 0.8402 -0.0004 28 1 3.8751 -0.6806 0.8889 29 1 3.8745 -0.6802 -0.8911 30 1 3.6577 -3.1508 -0.8907 31 1 3.6583 -3.1504 0.8892 32 1 5.9147 -2.1230 0.8891 33 1 5.9148 -2.1231 -0.8908 34 1 5.6979 -4.5936 -0.8900 35 1 5.6978 -4.5928 0.8899 36 1 10.1170 -4.4572 -0.5336 37 1 10.0259 -6.2275 -0.5243 38 1 11.3605 -5.4305 1.2671 39 1 10.0168 -4.4180 1.8443 40 1 11.7263 -6.8322 2.9725 41 1 10.3899 -6.8145 4.2036 42 1 9.4095 -8.8716 3.3021 43 1 11.0971 -9.1878 2.7102 44 1 8.9808 -8.2799 0.9631 45 1 10.7268 -7.8702 0.6751 46 1 5.9629 -6.3574 1.4593 47 1 6.8090 -7.9276 1.4846 48 1 6.8192 -6.5178 -0.7680 49 1 8.3245 -7.2879 -0.2364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451539093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:19 Heat of formation + Delta-G solvation = -108.921641 kcal Electronic energy + Delta-G solvation = -29771.959384 eV Core-core repulsion = 25826.163565 eV Total energy + Delta-G solvation = -3945.795820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73747 -40.20133 -38.29039 -37.24441 -37.02891 -36.68739 -34.72358 -33.84672 -31.81852 -31.05934 -28.06605 -27.09018 -26.31563 -25.31488 -23.92233 -22.67001 -21.83166 -21.65070 -20.17473 -19.33482 -18.88518 -18.30089 -17.86941 -17.30181 -17.14985 -16.73378 -16.63686 -16.30301 -15.98538 -15.72680 -15.41766 -15.15933 -14.87995 -14.78187 -14.65146 -14.04952 -13.83801 -13.74221 -13.57997 -13.48815 -13.38803 -13.15432 -13.03462 -12.94814 -12.83200 -12.68620 -12.34435 -12.29056 -12.20752 -12.07121 -11.77570 -11.72748 -11.53546 -11.39971 -11.33870 -11.29571 -11.28175 -10.98963 -10.77303 -10.75642 -9.94785 -8.31113 -6.33828 -1.02712 1.32470 1.34834 1.47965 1.57387 1.82623 1.92203 2.34675 2.57975 2.82000 3.04161 3.20311 3.31750 3.51090 3.61769 3.71238 3.77720 3.84284 3.94521 4.07799 4.13432 4.20252 4.39801 4.43887 4.52647 4.56821 4.59340 4.65954 4.70036 4.75446 4.77850 4.79564 4.84733 4.88778 4.97126 4.97840 5.10603 5.12376 5.15661 5.19446 5.23906 5.38746 5.46404 5.56491 5.62887 5.66627 6.27795 6.32330 6.73422 7.13396 7.30879 8.85398 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.002577 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.014280 B =10861.442395 C =11190.679251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.100 4.100 12 C -0.141 4.141 13 C 0.532 3.468 14 O -0.567 6.567 15 N -0.631 5.631 16 C 0.094 3.906 17 C -0.104 4.104 18 C -0.585 4.585 19 C -0.099 4.099 20 C -0.155 4.155 21 C -0.092 4.092 22 S 2.404 3.596 23 O -0.988 6.988 24 O -0.989 6.989 25 C -0.606 4.606 26 C 0.095 3.905 27 H 0.266 0.734 28 H 0.008 0.992 29 H 0.016 0.984 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.048 0.952 40 H 0.123 0.877 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.187 0.813 48 H 0.117 0.883 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.615 -26.451 -1.808 39.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.138 4.138 12 C -0.180 4.180 13 C 0.323 3.677 14 O -0.445 6.445 15 N -0.365 5.365 16 C -0.026 4.026 17 C -0.143 4.143 18 C -0.679 4.679 19 C -0.137 4.137 20 C -0.192 4.192 21 C -0.129 4.129 22 S 2.593 3.407 23 O -0.985 6.985 24 O -0.986 6.986 25 C -0.740 4.740 26 C -0.030 4.030 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.204 0.796 48 H 0.135 0.865 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 28.554 -25.326 -1.009 38.181 hybrid contribution -0.345 1.287 0.238 1.354 sum 28.210 -24.039 -0.772 37.071 Atomic orbital electron populations 1.70054 1.08019 1.28076 1.52846 1.25963 0.95624 1.03286 0.94287 0.85721 0.79253 0.78777 0.79318 1.18816 1.20647 1.18127 1.21520 0.91922 0.93311 1.49993 0.94259 1.19575 0.94094 0.95795 0.96014 1.21348 0.93425 0.96920 1.01436 1.21300 0.95142 0.95708 1.01640 1.21856 0.90615 0.99423 1.06088 1.20882 0.90712 0.82838 0.73300 1.90661 1.71234 1.32747 1.49843 1.47797 1.08143 1.05899 1.74677 1.20527 0.78333 1.06229 0.97541 1.20459 1.03739 0.94441 0.95668 1.31594 1.19044 1.06341 1.10885 1.22646 0.99152 0.96897 0.95009 1.23139 1.03406 0.96092 0.96611 1.23046 1.06031 0.86461 0.97376 1.08038 0.79627 0.74900 0.78139 1.93563 1.85998 1.32024 1.86875 1.93481 1.85783 1.72383 1.46918 1.31618 1.14168 1.15790 1.12450 1.21927 1.01399 0.85870 0.93788 0.92472 0.97372 0.96557 0.91556 0.92975 0.94059 0.92173 0.85197 0.88175 0.90586 0.84367 0.85270 0.93322 0.85925 0.92907 0.89987 0.87854 0.87333 0.84329 0.84290 0.79551 0.86453 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 47.27 27.47 68.60 1.88 49.16 16 4 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 7 C -0.53 -31.98 9.66 25.60 0.25 -31.73 16 8 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 9 C -0.02 -0.88 4.04 29.84 0.12 -0.76 16 10 C -0.09 -3.81 5.15 30.59 0.16 -3.66 16 11 C -0.10 -3.58 4.50 30.59 0.14 -3.45 16 12 C -0.14 -3.64 4.49 29.85 0.13 -3.50 16 13 C 0.53 14.32 6.27 87.66 0.55 14.87 16 14 O -0.57 -20.91 15.86 -3.06 -0.05 -20.96 16 15 N -0.63 -9.63 1.73 -834.74 -1.44 -11.07 16 16 C 0.09 0.97 5.02 83.42 0.42 1.39 16 17 C -0.10 -1.24 4.79 28.49 0.14 -1.11 16 18 C -0.59 -6.11 0.73 -10.05 -0.01 -6.12 16 19 C -0.10 -0.98 6.99 30.98 0.22 -0.76 16 20 C -0.16 -0.83 7.74 31.18 0.24 -0.58 16 21 C -0.09 -0.05 5.13 30.98 0.16 0.11 16 22 S 2.40 47.69 4.47 -56.49 -0.25 47.44 16 23 O -0.99 -31.38 14.90 -127.28 -1.90 -33.27 16 24 O -0.99 -25.85 16.32 -127.28 -2.08 -27.93 16 25 C -0.61 -5.57 5.85 73.32 0.43 -5.14 16 26 C 0.10 0.53 4.75 88.43 0.42 0.95 16 27 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 28 H 0.01 0.41 7.20 -2.38 -0.02 0.40 16 29 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 33 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 34 H 0.13 2.35 7.72 -2.38 -0.02 2.33 16 35 H 0.10 2.38 6.09 -2.39 -0.01 2.37 16 36 H 0.08 1.12 7.65 -2.38 -0.02 1.10 16 37 H 0.14 -0.09 6.18 -2.39 -0.01 -0.10 16 38 H 0.13 0.71 7.76 -2.39 -0.02 0.69 16 39 H 0.05 1.08 7.13 -2.39 -0.02 1.06 16 40 H 0.12 0.62 7.81 -2.38 -0.02 0.60 16 41 H 0.05 0.82 7.80 -2.39 -0.02 0.80 16 42 H 0.08 0.72 7.39 -2.39 -0.02 0.71 16 43 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 44 H 0.11 -0.48 5.12 -2.39 -0.01 -0.50 16 45 H 0.14 -0.74 7.58 -2.39 -0.02 -0.76 16 46 H 0.14 1.55 6.37 -2.39 -0.02 1.53 16 47 H 0.19 0.13 7.95 -2.39 -0.02 0.11 16 48 H 0.12 0.30 7.47 -2.39 -0.02 0.28 16 49 H 0.15 -0.61 4.54 -2.39 -0.01 -0.62 16 Total: -1.00 -96.99 372.29 1.18 -95.81 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 0.89 Total: 0.56 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 3.82 Total: -38.70 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.14 Total: -72.11 kcal Atomic # 8 Polarization: -78.14 SS G_CDS: -4.02 Total: -82.16 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.16 kcal Atomic # 16 Polarization: 47.69 SS G_CDS: -0.25 Total: 47.44 kcal Total: -96.99 1.18 -95.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451539093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.108 kcal (2) G-P(sol) polarization free energy of solvation -96.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds