Wall clock time and date at job start Wed Apr 1 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 13 13 S 1.81409 * 109.46814 * 60.00042 * 12 2 1 14 14 O 1.42096 * 110.54119 * 291.62426 * 13 12 2 15 15 O 1.42093 * 110.54080 * 68.37991 * 13 12 2 16 16 N 1.65601 * 104.44942 * 180.02562 * 13 12 2 17 17 C 1.46501 * 120.00164 * 64.99540 * 16 13 12 18 18 H 1.09003 * 107.91437 * 331.61664 * 17 16 13 19 19 C 1.51005 * 108.05829 * 215.00040 * 17 16 13 20 20 C 1.53682 * 110.87672 * 166.12652 * 19 17 16 21 21 C 1.51811 * 106.94340 * 79.02521 * 20 19 17 22 22 N 1.30301 * 127.91908 * 114.42013 * 21 20 19 23 23 N 1.29267 * 107.46606 * 180.02562 * 22 21 20 24 24 N 1.29151 * 109.43034 * 359.97438 * 23 22 21 25 25 N 1.28391 * 108.35485 * 359.97438 * 24 23 22 26 26 C 1.47661 * 127.74506 * 180.02562 * 25 24 23 27 27 C 1.50885 * 108.04946 * 88.18778 * 17 16 13 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 37 37 H 0.97004 * 120.00069 * 245.00516 * 16 13 12 38 38 H 1.09003 * 109.20087 * 286.48437 * 19 17 16 39 39 H 1.09004 * 109.19911 * 45.76754 * 19 17 16 40 40 H 1.08995 * 109.96344 * 198.38424 * 20 19 17 41 41 H 1.09004 * 109.95726 * 319.66902 * 20 19 17 42 42 H 1.09001 * 109.91461 * 5.14668 * 26 25 24 43 43 H 1.08997 * 109.91821 * 126.23762 * 26 25 24 44 44 H 1.08998 * 109.13132 * 314.72047 * 27 17 16 45 45 H 1.09003 * 109.12901 * 73.82212 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8165 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1339 -2.7304 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4100 -2.8544 16 7 2.0530 -0.7407 -3.9936 17 6 1.6233 -2.1252 -4.2054 18 1 1.3444 -2.5415 -3.2374 19 6 2.8045 -2.9072 -4.7284 20 6 2.5387 -4.4188 -4.6499 21 6 1.6524 -4.7740 -5.8301 22 7 1.9435 -5.5288 -6.8515 23 7 0.9032 -5.5624 -7.6181 24 7 -0.0364 -4.8444 -7.0989 25 7 0.3964 -4.3475 -5.9970 26 6 -0.3246 -3.4640 -5.0590 27 6 0.3917 -2.1044 -5.0769 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.7082 1.1608 3.4844 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2493 37 1 2.6994 -0.3364 -4.5933 38 1 2.9875 -2.6289 -5.7663 39 1 3.6854 -2.6668 -4.1331 40 1 3.4794 -4.9658 -4.7131 41 1 2.0295 -4.6590 -3.7165 42 1 -1.3581 -3.3424 -5.3835 43 1 -0.2984 -3.8879 -4.0551 44 1 -0.2907 -1.3364 -4.7127 45 1 0.6823 -1.8664 -6.1002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475403232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:39 Heat of formation + Delta-G solvation = 43.000643 kcal Electronic energy + Delta-G solvation = -29431.682727 eV Core-core repulsion = 25421.227159 eV Total energy + Delta-G solvation = -4010.455567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.54606 -38.91800 -36.70626 -36.41846 -35.63385 -35.48794 -34.21575 -31.79100 -31.73423 -30.97631 -26.85032 -26.33266 -25.84582 -25.41053 -25.32337 -23.81818 -21.46256 -21.42012 -19.81033 -18.97819 -18.08264 -17.54817 -17.01445 -16.79245 -16.05494 -15.80896 -15.48861 -15.02718 -14.91395 -14.81024 -14.15523 -13.96553 -13.51539 -13.45439 -13.16560 -13.08789 -12.64515 -12.48697 -12.42817 -12.22564 -12.20687 -11.96877 -11.84167 -11.61311 -11.35747 -11.29782 -11.19078 -11.14429 -11.05289 -10.94845 -10.84358 -10.48366 -10.40348 -10.26303 -10.21463 -9.90161 -9.78289 -9.50923 -8.80605 -8.51038 -6.14255 -4.26839 0.63939 1.06949 1.73427 2.02084 2.89749 3.17350 3.26667 3.27929 3.54013 3.90964 3.93058 4.08989 4.14442 4.27502 4.34370 4.53524 4.61504 4.64609 4.66650 4.78635 4.86477 5.11482 5.14498 5.23649 5.31332 5.40397 5.42348 5.49602 5.51303 5.59205 5.73364 5.79894 5.97542 6.21764 6.56169 6.66293 6.76438 6.82593 6.92585 7.18631 7.37340 7.57237 7.86439 7.97575 8.20973 8.40179 8.72088 9.39546 10.87031 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.003145 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.917432 B = 8901.407967 C = 9659.124289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.165 4.165 4 C -0.504 4.504 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.581 4.581 13 S 2.590 3.410 14 O -0.963 6.963 15 O -0.961 6.961 16 N -1.129 6.129 17 C 0.150 3.850 18 H 0.084 0.916 19 C -0.129 4.129 20 C -0.037 4.037 21 C 0.180 3.820 22 N -0.302 5.302 23 N -0.087 5.087 24 N -0.093 5.093 25 N -0.301 5.301 26 C 0.115 3.885 27 C -0.162 4.162 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.414 0.586 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -7.133 -11.939 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.223 4.223 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.715 4.715 13 S 2.688 3.312 14 O -0.953 6.953 15 O -0.951 6.951 16 N -0.884 5.884 17 C 0.043 3.957 18 H 0.102 0.898 19 C -0.169 4.169 20 C -0.078 4.078 21 C -0.099 4.099 22 N -0.152 5.152 23 N -0.081 5.081 24 N -0.079 5.079 25 N -0.104 5.104 26 C -0.006 4.006 27 C -0.202 4.202 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.247 0.753 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.439 -6.944 -13.052 14.791 hybrid contribution 0.990 -0.333 1.677 1.975 sum 1.429 -7.277 -11.376 13.579 Atomic orbital electron populations 1.22278 0.96834 1.00571 1.02447 1.17931 0.92846 0.92183 0.88995 1.22287 0.99795 0.97835 1.02367 1.20963 1.31868 1.12175 0.89335 0.92211 1.24940 0.94824 0.94948 0.98996 1.69801 1.36170 1.22547 1.23506 0.86487 0.78679 0.79630 0.82888 1.19807 1.20912 1.20920 1.30530 1.11514 1.12613 1.16809 1.05803 0.75003 0.74788 0.75583 1.93522 1.29836 1.86398 1.85521 1.93571 1.78012 1.37931 1.85634 1.56132 1.61058 1.23492 1.47768 1.20141 0.93269 0.82348 0.99986 0.89759 1.21737 0.98892 0.92454 1.03784 1.20715 0.98834 0.96706 0.91527 1.26029 0.86797 0.96827 1.00217 1.74949 1.20513 1.17648 1.02041 1.78866 0.94061 1.14360 1.20797 1.78861 1.22802 1.10019 0.96222 1.48746 1.11461 1.33657 1.16548 1.22894 0.97874 0.88089 0.91740 1.22464 0.98516 0.96457 1.02789 0.95302 0.88634 0.94496 0.88588 0.94413 0.95425 0.92708 0.86079 0.86534 0.75312 0.90420 0.87998 0.86471 0.87831 0.85735 0.86448 0.85630 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 7.78 37.16 0.29 -3.35 16 2 C 0.08 1.81 0.52 -155.66 -0.08 1.73 16 3 C -0.17 -3.78 7.77 37.15 0.29 -3.49 16 4 C -0.50 -12.22 8.01 -34.44 -0.28 -12.49 16 5 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 6 C 0.07 1.63 5.15 -17.82 -0.09 1.54 16 7 N -0.88 -22.84 9.35 55.43 0.52 -22.32 16 8 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C -0.58 -9.49 4.87 37.16 0.18 -9.31 16 13 S 2.59 39.40 4.41 -107.50 -0.47 38.93 16 14 O -0.96 -16.31 13.80 -57.54 -0.79 -17.11 16 15 O -0.96 -17.90 15.70 -57.54 -0.90 -18.81 16 16 N -1.13 -11.11 5.22 -6.67 -0.03 -11.14 16 17 C 0.15 1.16 2.05 -69.99 -0.14 1.01 16 18 H 0.08 0.56 6.53 -51.93 -0.34 0.22 16 19 C -0.13 -0.76 5.05 -27.38 -0.14 -0.90 16 20 C -0.04 -0.21 6.00 -26.98 -0.16 -0.37 16 21 C 0.18 1.73 7.10 -156.74 -1.11 0.62 16 22 N -0.30 -3.88 12.37 32.63 0.40 -3.47 16 23 N -0.09 -1.24 13.45 60.31 0.81 -0.43 16 24 N -0.09 -1.17 13.36 60.35 0.81 -0.37 16 25 N -0.30 -2.91 3.36 -57.20 -0.19 -3.10 16 26 C 0.11 0.77 6.73 -3.05 -0.02 0.75 16 27 C -0.16 -1.28 5.18 -27.43 -0.14 -1.42 16 28 H 0.03 0.60 5.46 -51.93 -0.28 0.32 16 29 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.60 5.46 -51.93 -0.28 0.31 16 34 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.12 1.79 8.14 -51.92 -0.42 1.36 16 36 H 0.12 1.60 7.35 -51.92 -0.38 1.22 16 37 H 0.41 3.39 8.75 -34.47 -0.30 3.09 16 38 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 39 H 0.10 0.48 8.13 -51.93 -0.42 0.06 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.41 7.89 -51.93 -0.41 0.00 16 42 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.12 0.53 7.88 -51.93 -0.41 0.12 16 44 H 0.13 1.17 6.42 -51.93 -0.33 0.84 16 45 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -33.21 356.88 -7.19 -40.40 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.28 Total: 3.23 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -1.41 Total: -25.69 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 2.31 Total: -40.83 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.70 Total: -35.91 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 39.40 SS G_CDS: -0.47 Total: 38.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.21 -7.19 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475403232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.401 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds