Wall clock time and date at job start Wed Apr 1 2020 01:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 13 13 S 1.81409 * 109.46814 * 60.00042 * 12 2 1 14 14 O 1.42096 * 110.54119 * 291.62426 * 13 12 2 15 15 O 1.42093 * 110.54080 * 68.37991 * 13 12 2 16 16 N 1.65601 * 104.44942 * 180.02562 * 13 12 2 17 17 C 1.46501 * 120.00164 * 64.99540 * 16 13 12 18 18 H 1.09003 * 107.91437 * 331.61664 * 17 16 13 19 19 C 1.51005 * 108.05829 * 215.00040 * 17 16 13 20 20 C 1.53682 * 110.87672 * 166.12652 * 19 17 16 21 21 C 1.51811 * 106.94340 * 79.02521 * 20 19 17 22 22 N 1.30301 * 127.91908 * 114.42013 * 21 20 19 23 23 N 1.29267 * 107.46606 * 180.02562 * 22 21 20 24 24 N 1.29151 * 109.43034 * 359.97438 * 23 22 21 25 25 N 1.28391 * 108.35485 * 359.97438 * 24 23 22 26 26 C 1.47661 * 127.74506 * 180.02562 * 25 24 23 27 27 C 1.50885 * 108.04946 * 88.18778 * 17 16 13 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 37 37 H 0.97004 * 120.00069 * 245.00516 * 16 13 12 38 38 H 1.09003 * 109.20087 * 286.48437 * 19 17 16 39 39 H 1.09004 * 109.19911 * 45.76754 * 19 17 16 40 40 H 1.08995 * 109.96344 * 198.38424 * 20 19 17 41 41 H 1.09004 * 109.95726 * 319.66902 * 20 19 17 42 42 H 1.09001 * 109.91461 * 5.14668 * 26 25 24 43 43 H 1.08997 * 109.91821 * 126.23762 * 26 25 24 44 44 H 1.08998 * 109.13132 * 314.72047 * 27 17 16 45 45 H 1.09003 * 109.12901 * 73.82212 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8165 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1339 -2.7304 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4100 -2.8544 16 7 2.0530 -0.7407 -3.9936 17 6 1.6233 -2.1252 -4.2054 18 1 1.3444 -2.5415 -3.2374 19 6 2.8045 -2.9072 -4.7284 20 6 2.5387 -4.4188 -4.6499 21 6 1.6524 -4.7740 -5.8301 22 7 1.9435 -5.5288 -6.8515 23 7 0.9032 -5.5624 -7.6181 24 7 -0.0364 -4.8444 -7.0989 25 7 0.3964 -4.3475 -5.9970 26 6 -0.3246 -3.4640 -5.0590 27 6 0.3917 -2.1044 -5.0769 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.7082 1.1608 3.4844 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2493 37 1 2.6994 -0.3364 -4.5933 38 1 2.9875 -2.6289 -5.7663 39 1 3.6854 -2.6668 -4.1331 40 1 3.4794 -4.9658 -4.7131 41 1 2.0295 -4.6590 -3.7165 42 1 -1.3581 -3.3424 -5.3835 43 1 -0.2984 -3.8879 -4.0551 44 1 -0.2907 -1.3364 -4.7127 45 1 0.6823 -1.8664 -6.1002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475403232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:38 Heat of formation + Delta-G solvation = 18.500088 kcal Electronic energy + Delta-G solvation = -29432.745150 eV Core-core repulsion = 25421.227159 eV Total energy + Delta-G solvation = -4011.517991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.35092 -39.57246 -38.06406 -37.98983 -36.82204 -36.36873 -34.93898 -33.58201 -32.38836 -31.75701 -28.27095 -27.62756 -27.21767 -26.97527 -26.04376 -24.62146 -22.14608 -22.03405 -21.31023 -20.19878 -18.94138 -18.55161 -17.91348 -17.74956 -17.56323 -16.83574 -16.57426 -16.36295 -16.15166 -15.50145 -14.99910 -14.81387 -14.72282 -14.47232 -14.37870 -14.22353 -13.94267 -13.74915 -13.30407 -13.14450 -13.04223 -12.94636 -12.90674 -12.84956 -12.72716 -12.63485 -12.47535 -12.40176 -12.14276 -12.09649 -12.05915 -11.85871 -11.84203 -11.66300 -11.48447 -11.32831 -11.00082 -10.68250 -10.37942 -10.34815 -7.99109 -6.16980 -0.55799 0.29630 1.08792 1.17096 1.45804 1.50541 1.58215 1.90689 2.47547 2.92078 2.96209 3.24203 3.30043 3.31775 3.44100 3.59871 3.78874 3.99573 4.09770 4.10399 4.13837 4.24603 4.27231 4.34554 4.47223 4.65227 4.67408 4.79297 4.84958 4.90761 4.93158 4.95432 4.98161 5.06375 5.13961 5.15121 5.20897 5.36067 5.46892 5.57094 5.70672 6.04309 6.12344 6.18770 6.39493 6.89735 7.52024 7.55561 9.00418 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.003145 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.917432 B = 8901.407967 C = 9659.124289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.070 3.930 3 C -0.164 4.164 4 C -0.511 4.511 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.261 1.261 10 H -0.290 1.290 11 H -0.287 1.287 12 C -0.586 4.586 13 S 2.610 3.390 14 O -0.982 6.982 15 O -0.999 6.999 16 N -1.111 6.111 17 C 0.140 3.860 18 H 0.105 0.895 19 C -0.123 4.123 20 C -0.034 4.034 21 C 0.188 3.812 22 N -0.332 5.332 23 N -0.121 5.121 24 N -0.110 5.110 25 N -0.295 5.295 26 C 0.109 3.891 27 C -0.160 4.160 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.259 0.741 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.424 0.576 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.148 0.852 44 H 0.113 0.887 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 -8.835 -11.822 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 C -0.222 4.222 4 C -0.550 4.550 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.776 3.224 9 H -0.185 1.185 10 H -0.216 1.216 11 H -0.213 1.213 12 C -0.719 4.719 13 S 2.708 3.292 14 O -0.972 6.972 15 O -0.990 6.990 16 N -0.870 5.870 17 C 0.033 3.967 18 H 0.123 0.877 19 C -0.163 4.163 20 C -0.075 4.075 21 C -0.091 4.091 22 N -0.181 5.181 23 N -0.115 5.115 24 N -0.097 5.097 25 N -0.099 5.099 26 C -0.010 4.010 27 C -0.201 4.201 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.260 0.740 38 H 0.089 0.911 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.131 0.869 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.518 -8.644 -12.932 15.629 hybrid contribution 0.642 0.230 1.607 1.746 sum 2.160 -8.414 -11.325 14.273 Atomic orbital electron populations 1.22202 0.97516 1.00822 1.01248 1.17893 0.92470 0.91708 0.91132 1.22243 0.99792 0.98970 1.01156 1.21379 1.31213 1.12220 0.90215 0.91302 1.25648 0.95320 0.95624 1.01650 1.69957 1.37444 1.23847 1.23570 0.85646 0.77966 0.78848 0.79980 1.18489 1.21629 1.21309 1.30454 1.12817 1.13801 1.14798 1.04890 0.74359 0.74135 0.75844 1.93498 1.31196 1.86592 1.85879 1.93517 1.78569 1.40596 1.86278 1.55625 1.61048 1.24336 1.46008 1.20505 0.93892 0.81059 1.01206 0.87716 1.21711 0.98680 0.92111 1.03780 1.21026 0.99133 0.96471 0.90869 1.26716 0.86917 0.95226 1.00192 1.74868 1.20736 1.19298 1.03222 1.78832 0.94852 1.15712 1.22060 1.78782 1.23046 1.10425 0.97408 1.48949 1.11699 1.33256 1.15972 1.23223 0.97975 0.87182 0.92616 1.22390 0.98544 0.96719 1.02408 0.94646 0.91720 0.93417 0.91461 0.94236 0.94990 0.93182 0.84206 0.83355 0.74030 0.91075 0.85832 0.84902 0.85016 0.84772 0.83405 0.86910 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.99 7.78 71.98 0.56 -6.43 16 2 C 0.07 2.96 0.52 -52.93 -0.03 2.93 16 3 C -0.16 -7.49 7.77 71.98 0.56 -6.93 16 4 C -0.51 -23.89 8.01 25.60 0.21 -23.68 16 5 H 0.07 3.02 7.74 -2.91 -0.02 3.00 16 6 C 0.02 0.83 5.15 84.66 0.44 1.26 16 7 N -0.91 -47.74 9.35 21.45 0.20 -47.54 16 8 Si 0.95 39.39 29.54 68.60 2.03 41.41 16 9 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 12 C -0.59 -17.18 4.87 71.98 0.35 -16.83 16 13 S 2.61 73.21 4.41 -56.49 -0.25 72.96 16 14 O -0.98 -31.28 13.80 -127.65 -1.76 -33.04 16 15 O -1.00 -35.94 15.70 -127.65 -2.00 -37.94 16 16 N -1.11 -18.20 5.22 -175.02 -0.91 -19.11 16 17 C 0.14 1.60 2.05 43.65 0.09 1.69 16 18 H 0.10 0.82 6.53 -2.39 -0.02 0.80 16 19 C -0.12 -0.93 5.05 30.17 0.15 -0.77 16 20 C -0.03 -0.25 6.00 30.43 0.18 -0.06 16 21 C 0.19 3.15 7.10 139.14 0.99 4.13 16 22 N -0.33 -8.14 12.37 -50.67 -0.63 -8.76 16 23 N -0.12 -3.40 13.45 36.91 0.50 -2.91 16 24 N -0.11 -2.69 13.36 37.02 0.49 -2.19 16 25 N -0.30 -5.08 3.36 -334.89 -1.13 -6.20 16 26 C 0.11 1.14 6.73 86.39 0.58 1.73 16 27 C -0.16 -2.09 5.18 30.14 0.16 -1.94 16 28 H 0.03 1.46 5.46 -2.39 -0.01 1.44 16 29 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 30 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 3.45 6.07 -2.39 -0.01 3.43 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.39 5.46 -2.39 -0.01 1.38 16 34 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 35 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.15 3.33 7.35 -2.39 -0.02 3.31 16 37 H 0.42 5.65 8.75 -96.74 -0.85 4.80 16 38 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 39 H 0.12 0.50 8.13 -2.38 -0.02 0.48 16 40 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.13 0.28 7.89 -2.38 -0.02 0.26 16 42 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.15 0.67 7.88 -2.39 -0.02 0.65 16 44 H 0.11 1.86 6.42 -2.39 -0.02 1.84 16 45 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 Total: -1.00 -73.89 356.88 0.96 -72.93 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.19 Total: 15.30 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 4.23 Total: -44.91 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -1.47 Total: -86.72 kcal Atomic # 8 Polarization: -67.21 SS G_CDS: -3.77 Total: -70.98 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: 73.21 SS G_CDS: -0.25 Total: 72.96 kcal Total: -73.89 0.96 -72.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475403232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.429 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds