Wall clock time and date at job start Wed Apr 1 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47515 * 2 1 4 4 C 1.53001 * 109.47249 * 120.00334 * 2 1 3 5 5 N 1.46497 * 109.47009 * 174.99737 * 4 2 1 6 6 C 1.34778 * 119.99664 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00324 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00098 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99622 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00280 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99572 * 180.02562 * 10 9 8 13 13 N 1.31630 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99681 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47436 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47287 * 119.99803 * 14 12 10 17 17 H 1.48503 * 109.46965 * 239.99470 * 14 12 10 18 18 N 1.46908 * 109.47193 * 240.00377 * 2 1 3 19 19 C 1.46893 * 111.00053 * 85.00051 * 18 2 1 20 20 C 1.50697 * 109.47200 * 180.02562 * 19 18 2 21 21 N 1.31043 * 126.46366 * 89.99569 * 20 19 18 22 22 C 1.35030 * 105.58935 * 179.97438 * 21 20 19 23 23 N 1.38838 * 126.38745 * 180.02562 * 22 21 20 24 24 C 1.46498 * 120.00479 * 180.02562 * 23 22 21 25 25 C 1.46504 * 119.99919 * 0.02562 * 23 22 21 26 26 N 1.30635 * 107.22449 * 0.02562 * 22 21 20 27 27 O 1.21293 * 110.12605 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.46965 * 299.99676 * 1 2 3 30 30 H 1.09007 * 109.46973 * 59.99866 * 1 2 3 31 31 H 1.08997 * 109.46944 * 295.00340 * 4 2 1 32 32 H 1.09003 * 109.47180 * 54.99929 * 4 2 1 33 33 H 0.96995 * 120.00232 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46960 * 300.00095 * 8 6 5 35 35 H 1.09003 * 109.46849 * 59.99873 * 8 6 5 36 36 H 0.97001 * 119.99781 * 179.97438 * 13 12 10 37 37 H 1.00894 * 110.99822 * 208.95668 * 18 2 1 38 38 H 1.08998 * 109.47130 * 59.99949 * 19 18 2 39 39 H 1.09009 * 109.46968 * 299.99969 * 19 18 2 40 40 H 1.09002 * 109.47162 * 59.99826 * 24 23 22 41 41 H 1.09000 * 109.47555 * 180.02562 * 24 23 22 42 42 H 1.09009 * 109.46624 * 300.00570 * 24 23 22 43 43 H 1.09001 * 109.47245 * 89.99748 * 25 23 22 44 44 H 1.09004 * 109.47007 * 209.99961 * 25 23 22 45 45 H 1.09004 * 109.47260 * 329.99522 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1730 -1.4293 2.1905 7 8 3.5699 -1.8852 3.1389 8 6 5.6750 -1.5371 2.1305 9 16 6.2783 -2.3905 3.6082 10 6 8.0101 -2.3763 3.2840 11 1 8.3864 -1.9232 2.3788 12 6 8.8907 -2.9485 4.1917 13 7 8.4320 -3.5012 5.2948 14 14 10.7267 -2.9341 3.8477 15 1 10.9820 -2.2582 2.5503 16 1 11.4280 -2.2032 4.9335 17 1 11.2296 -4.3300 3.7856 18 7 2.0197 -0.6925 -1.1995 19 6 2.0825 0.2227 -2.3469 20 6 2.5874 -0.5216 -3.5560 21 7 1.8583 -1.1605 -4.4378 22 6 2.7329 -1.6671 -5.3332 23 7 2.4188 -2.4245 -6.4536 24 6 3.4854 -2.9058 -7.3351 25 6 1.0207 -2.7422 -6.7545 26 7 3.9297 -1.3118 -4.9486 27 8 3.8632 -0.6544 -3.9314 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2951 33 1 3.9824 -0.4622 0.4318 34 1 5.9637 -2.0993 1.2424 35 1 6.1093 -0.5383 2.0853 36 1 9.0474 -3.9013 5.9289 37 1 2.9173 -1.1205 -1.0288 38 1 2.7589 1.0462 -2.1181 39 1 1.0871 0.6164 -2.5525 40 1 4.1650 -3.5428 -6.7688 41 1 3.0494 -3.4772 -8.1546 42 1 4.0354 -2.0552 -7.7378 43 1 0.5991 -1.9623 -7.3886 44 1 0.9692 -3.6996 -7.2733 45 1 0.4534 -2.8014 -5.8256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480425144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:13 Heat of formation + Delta-G solvation = 54.784915 kcal Electronic energy + Delta-G solvation = -26697.209616 eV Core-core repulsion = 22687.265053 eV Total energy + Delta-G solvation = -4009.944563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.56714 -39.52300 -37.87391 -37.81297 -35.29924 -34.12575 -32.66502 -32.42570 -30.95925 -29.38969 -28.68692 -26.79043 -26.21177 -25.72461 -25.27053 -23.27200 -21.38878 -21.06419 -20.46901 -18.28784 -18.20309 -17.87452 -16.94489 -16.41174 -16.25842 -16.24546 -15.68135 -15.35026 -15.25980 -14.86937 -14.80255 -14.48082 -13.98128 -13.70506 -13.34588 -13.08779 -13.04027 -12.97233 -12.90608 -12.66401 -12.45433 -12.34656 -12.26825 -12.11990 -12.04873 -11.75890 -11.29290 -11.14178 -11.06674 -11.01890 -10.75366 -10.65660 -9.80852 -9.46045 -9.08308 -9.07498 -8.98315 -8.42673 -8.23866 -6.50220 -6.21783 -3.92260 0.93856 2.12977 2.21248 2.55191 2.97992 3.05095 3.22052 3.28051 3.32621 3.52074 3.62417 3.75403 4.20348 4.27978 4.36808 4.55440 4.61545 4.79669 4.85180 4.89568 4.93009 4.97119 5.11096 5.13602 5.14156 5.17481 5.29116 5.35593 5.41965 5.46569 5.50899 5.60864 5.68516 5.80641 5.87444 5.96341 6.12499 6.35317 6.43057 6.48356 6.71053 6.74042 7.56757 7.60572 8.13608 8.35663 8.54775 9.23866 10.85686 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.002225 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.784838 B =12578.522597 C =14754.423535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.059 0.941 4 C 0.118 3.882 5 N -0.744 5.744 6 C 0.534 3.466 7 O -0.513 6.513 8 C -0.155 4.155 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.680 5.680 19 C 0.153 3.847 20 C 0.200 3.800 21 N -0.489 5.489 22 C 0.422 3.578 23 N -0.591 5.591 24 C 0.108 3.892 25 C 0.108 3.892 26 N -0.430 5.430 27 O 0.063 5.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.393 0.607 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.351 0.649 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 8.465 -24.046 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.077 0.923 4 C -0.007 4.007 5 N -0.400 5.400 6 C 0.320 3.680 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.317 5.317 19 C 0.022 3.978 20 C -0.022 4.022 21 N -0.230 5.230 22 C 0.062 3.938 23 N -0.319 5.319 24 C -0.035 4.035 25 C -0.035 4.035 26 N -0.158 5.158 27 O 0.018 5.982 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.172 0.828 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.252 6.958 -23.103 30.253 hybrid contribution 2.884 1.184 -1.494 3.457 sum -15.367 8.142 -24.597 30.124 Atomic orbital electron populations 1.21760 0.92836 1.03315 1.01899 1.21835 0.97196 0.96249 0.87916 0.92276 1.21526 0.80480 1.01858 0.96804 1.46058 1.07103 1.62291 1.24583 1.20301 0.89508 0.76615 0.81559 1.90714 1.69867 1.45636 1.32445 1.23542 0.93441 1.05733 1.07805 1.85402 1.04673 1.73139 1.20101 1.22907 0.91470 1.44212 1.09695 0.90855 1.24999 0.99622 0.94547 0.94470 1.70028 1.35311 1.35501 1.09438 0.86113 0.82963 0.78004 0.78399 1.19599 1.20566 1.20570 1.60457 1.34748 1.32551 1.03915 1.20414 1.02517 0.91601 0.83233 1.28228 0.80670 0.95918 0.97393 1.71798 1.30861 1.15584 1.04735 1.22018 0.85132 0.95358 0.91278 1.45074 1.07767 1.56185 1.22912 1.21640 0.89610 0.99352 0.92908 1.21665 0.79520 1.00201 1.02077 1.74853 1.19561 1.18612 1.02739 1.85277 1.29477 1.52649 1.30840 0.91280 0.91725 0.92162 0.90427 0.90403 0.77322 0.89157 0.89190 0.92236 0.82777 0.90857 0.86285 0.92298 0.89903 0.92458 0.93082 0.90896 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.42 37.16 0.35 -0.51 16 2 C 0.08 0.53 2.81 -67.71 -0.19 0.34 16 3 H 0.06 0.33 7.80 -51.93 -0.40 -0.08 16 4 C 0.12 1.21 5.31 -4.04 -0.02 1.19 16 5 N -0.74 -9.04 4.99 -60.29 -0.30 -9.34 16 6 C 0.53 9.60 7.85 -10.98 -0.09 9.52 16 7 O -0.51 -11.40 15.86 5.55 0.09 -11.31 16 8 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 N -0.68 -5.15 6.29 -107.99 -0.68 -5.83 16 19 C 0.15 0.95 6.11 -4.98 -0.03 0.92 16 20 C 0.20 1.93 8.01 -12.99 -0.10 1.83 16 21 N -0.49 -5.54 10.96 -12.67 -0.14 -5.67 16 22 C 0.42 5.02 8.35 -321.18 -2.68 2.34 16 23 N -0.59 -5.49 3.39 -193.14 -0.65 -6.15 16 24 C 0.11 0.74 10.51 59.85 0.63 1.37 16 25 C 0.11 0.70 10.56 59.85 0.63 1.33 16 26 N -0.43 -5.53 11.84 28.63 0.34 -5.19 16 27 O 0.06 0.72 11.29 18.08 0.20 0.92 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.31 7.45 -51.92 -0.39 -0.07 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.39 3.64 7.37 -40.82 -0.30 3.34 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.35 2.96 6.70 -39.30 -0.26 2.69 16 38 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.12 0.60 7.44 -51.92 -0.39 0.22 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.32 7.79 -51.93 -0.40 -0.08 16 42 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 45 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -37.29 396.98 -9.47 -46.76 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.72 Total: 0.10 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.08 Total: 2.54 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.70 Total: -57.64 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.29 Total: -10.38 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.29 -9.47 -46.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480425144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.543 kcal (2) G-P(sol) polarization free energy of solvation -37.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds