Wall clock time and date at job start Wed Apr 1 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47515 * 2 1 4 4 C 1.53001 * 109.47249 * 120.00334 * 2 1 3 5 5 N 1.46497 * 109.47009 * 174.99737 * 4 2 1 6 6 C 1.34778 * 119.99664 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00324 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00098 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99622 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00280 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99572 * 180.02562 * 10 9 8 13 13 N 1.31630 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99681 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47436 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47287 * 119.99803 * 14 12 10 17 17 H 1.48503 * 109.46965 * 239.99470 * 14 12 10 18 18 N 1.46908 * 109.47193 * 240.00377 * 2 1 3 19 19 C 1.46893 * 111.00053 * 85.00051 * 18 2 1 20 20 C 1.50697 * 109.47200 * 180.02562 * 19 18 2 21 21 N 1.31043 * 126.46366 * 89.99569 * 20 19 18 22 22 C 1.35030 * 105.58935 * 179.97438 * 21 20 19 23 23 N 1.38838 * 126.38745 * 180.02562 * 22 21 20 24 24 C 1.46498 * 120.00479 * 180.02562 * 23 22 21 25 25 C 1.46504 * 119.99919 * 0.02562 * 23 22 21 26 26 N 1.30635 * 107.22449 * 0.02562 * 22 21 20 27 27 O 1.21293 * 110.12605 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.46965 * 299.99676 * 1 2 3 30 30 H 1.09007 * 109.46973 * 59.99866 * 1 2 3 31 31 H 1.08997 * 109.46944 * 295.00340 * 4 2 1 32 32 H 1.09003 * 109.47180 * 54.99929 * 4 2 1 33 33 H 0.96995 * 120.00232 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46960 * 300.00095 * 8 6 5 35 35 H 1.09003 * 109.46849 * 59.99873 * 8 6 5 36 36 H 0.97001 * 119.99781 * 179.97438 * 13 12 10 37 37 H 1.00894 * 110.99822 * 208.95668 * 18 2 1 38 38 H 1.08998 * 109.47130 * 59.99949 * 19 18 2 39 39 H 1.09009 * 109.46968 * 299.99969 * 19 18 2 40 40 H 1.09002 * 109.47162 * 59.99826 * 24 23 22 41 41 H 1.09000 * 109.47555 * 180.02562 * 24 23 22 42 42 H 1.09009 * 109.46624 * 300.00570 * 24 23 22 43 43 H 1.09001 * 109.47245 * 89.99748 * 25 23 22 44 44 H 1.09004 * 109.47007 * 209.99961 * 25 23 22 45 45 H 1.09004 * 109.47260 * 329.99522 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1730 -1.4293 2.1905 7 8 3.5699 -1.8852 3.1389 8 6 5.6750 -1.5371 2.1305 9 16 6.2783 -2.3905 3.6082 10 6 8.0101 -2.3763 3.2840 11 1 8.3864 -1.9232 2.3788 12 6 8.8907 -2.9485 4.1917 13 7 8.4320 -3.5012 5.2948 14 14 10.7267 -2.9341 3.8477 15 1 10.9820 -2.2582 2.5503 16 1 11.4280 -2.2032 4.9335 17 1 11.2296 -4.3300 3.7856 18 7 2.0197 -0.6925 -1.1995 19 6 2.0825 0.2227 -2.3469 20 6 2.5874 -0.5216 -3.5560 21 7 1.8583 -1.1605 -4.4378 22 6 2.7329 -1.6671 -5.3332 23 7 2.4188 -2.4245 -6.4536 24 6 3.4854 -2.9058 -7.3351 25 6 1.0207 -2.7422 -6.7545 26 7 3.9297 -1.3118 -4.9486 27 8 3.8632 -0.6544 -3.9314 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2951 33 1 3.9824 -0.4622 0.4318 34 1 5.9637 -2.0993 1.2424 35 1 6.1093 -0.5383 2.0853 36 1 9.0474 -3.9013 5.9289 37 1 2.9173 -1.1205 -1.0288 38 1 2.7589 1.0462 -2.1181 39 1 1.0871 0.6164 -2.5525 40 1 4.1650 -3.5428 -6.7688 41 1 3.0494 -3.4772 -8.1546 42 1 4.0354 -2.0552 -7.7378 43 1 0.5991 -1.9623 -7.3886 44 1 0.9692 -3.6996 -7.2733 45 1 0.4534 -2.8014 -5.8256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480425144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:12 Heat of formation + Delta-G solvation = 26.203720 kcal Electronic energy + Delta-G solvation = -26698.448990 eV Core-core repulsion = 22687.265053 eV Total energy + Delta-G solvation = -4011.183936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.36805 -40.76886 -38.68612 -38.53278 -36.10474 -35.11612 -34.58318 -33.51569 -31.78811 -30.71155 -29.22196 -27.75363 -27.37784 -26.87902 -26.37258 -24.01161 -22.08079 -21.81874 -21.69894 -19.88040 -19.09253 -18.84517 -18.04914 -17.53750 -17.15411 -17.05657 -16.88446 -16.66128 -16.18434 -15.94960 -15.84904 -15.78262 -15.07067 -14.73825 -14.47771 -14.30934 -14.05706 -13.65178 -13.58501 -13.50820 -13.24799 -13.15953 -13.03976 -12.95141 -12.92167 -12.89080 -12.84861 -12.63451 -12.55028 -11.94987 -11.90877 -11.69839 -11.42219 -11.15959 -10.97431 -10.27091 -10.16069 -9.60174 -9.12030 -8.66199 -8.35001 -6.12502 0.18845 1.27097 1.39764 1.41018 1.46958 1.50180 1.58160 1.60815 1.89709 2.23728 2.28477 2.84885 2.99246 3.09986 3.32338 3.60428 3.68995 3.96551 4.01413 4.17542 4.24069 4.30665 4.32699 4.38998 4.40441 4.44558 4.51724 4.62463 4.66555 4.66864 4.76831 4.83494 4.88927 4.95929 4.97378 5.07864 5.35074 5.42402 5.50895 5.81610 5.85283 6.01148 6.10170 6.20103 6.42519 7.06694 7.21571 7.36530 8.74401 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.002225 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.784838 B =12578.522597 C =14754.423535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 H 0.087 0.913 4 C 0.117 3.883 5 N -0.715 5.715 6 C 0.536 3.464 7 O -0.563 6.563 8 C -0.131 4.131 9 S -0.151 6.151 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.275 1.275 18 N -0.693 5.693 19 C 0.155 3.845 20 C 0.208 3.792 21 N -0.508 5.508 22 C 0.409 3.591 23 N -0.596 5.596 24 C 0.105 3.895 25 C 0.106 3.894 26 N -0.461 5.461 27 O 0.052 5.948 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.411 0.589 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.345 0.655 38 H 0.104 0.896 39 H 0.136 0.864 40 H 0.047 0.953 41 H 0.116 0.884 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.055 10.064 -26.368 32.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 H 0.104 0.896 4 C -0.007 4.007 5 N -0.371 5.371 6 C 0.322 3.678 7 O -0.441 6.441 8 C -0.283 4.283 9 S 0.076 5.924 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.200 1.200 18 N -0.329 5.329 19 C 0.025 3.975 20 C -0.014 4.014 21 N -0.249 5.249 22 C 0.048 3.952 23 N -0.324 5.324 24 C -0.037 4.037 25 C -0.036 4.036 26 N -0.191 5.191 27 O 0.009 5.991 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.248 0.752 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.065 0.935 41 H 0.134 0.866 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.348 8.595 -25.483 32.556 hybrid contribution 2.754 0.720 -0.866 2.975 sum -15.594 9.315 -26.348 32.003 Atomic orbital electron populations 1.21762 0.92074 1.02692 1.03110 1.21770 0.97545 0.96758 0.85714 0.89554 1.21674 0.78651 1.01478 0.98919 1.45750 1.08051 1.59966 1.23293 1.20005 0.88789 0.76894 0.82117 1.90704 1.70406 1.48209 1.34735 1.23389 0.94882 1.05882 1.04119 1.85569 1.05810 1.75202 1.25797 1.23231 0.91693 1.44242 1.10079 0.89963 1.26125 1.05186 0.93859 0.94066 1.70188 1.37297 1.36584 1.10676 0.84912 0.75982 0.78261 0.78839 1.18092 1.19833 1.20038 1.60443 1.34515 1.33479 1.04497 1.20690 1.04088 0.91394 0.81291 1.28937 0.79979 0.94815 0.97628 1.71813 1.31271 1.16483 1.05360 1.22466 0.85125 0.95524 0.92052 1.45524 1.09224 1.55363 1.22305 1.21771 0.89379 0.99272 0.93246 1.21814 0.78073 1.01915 1.01781 1.74817 1.20422 1.20113 1.03793 1.85221 1.30254 1.52862 1.30737 0.92869 0.90866 0.90598 0.90513 0.92223 0.75156 0.87439 0.87002 0.92007 0.83473 0.87780 0.84652 0.93466 0.86567 0.92963 0.92170 0.88233 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.42 71.98 0.68 -0.66 16 2 C 0.09 0.98 2.81 44.91 0.13 1.10 16 3 H 0.09 0.54 7.80 -2.39 -0.02 0.52 16 4 C 0.12 2.21 5.31 86.38 0.46 2.67 16 5 N -0.72 -16.04 4.99 -463.05 -2.31 -18.35 16 6 C 0.54 18.98 7.85 87.66 0.69 19.67 16 7 O -0.56 -25.51 15.86 -3.04 -0.05 -25.56 16 8 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.54 -31.14 9.50 67.96 0.65 -30.50 16 11 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 12 C 0.01 0.71 5.49 84.86 0.47 1.17 16 13 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 14 Si 1.00 43.89 29.55 68.60 2.03 45.91 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 N -0.69 -8.72 6.29 -495.56 -3.12 -11.84 16 19 C 0.16 1.44 6.11 85.56 0.52 1.96 16 20 C 0.21 3.72 8.01 88.36 0.71 4.42 16 21 N -0.51 -11.08 10.96 -311.41 -3.41 -14.49 16 22 C 0.41 9.56 8.35 260.92 2.18 11.74 16 23 N -0.60 -10.55 3.39 -767.76 -2.60 -13.15 16 24 C 0.11 1.34 10.51 127.77 1.34 2.69 16 25 C 0.11 1.21 10.56 127.77 1.35 2.56 16 26 N -0.46 -11.79 11.84 -66.66 -0.79 -12.58 16 27 O 0.05 1.16 11.29 74.77 0.84 2.00 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.53 7.45 -2.38 -0.02 0.51 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.41 6.40 7.37 -92.71 -0.68 5.72 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 35 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.35 5.03 6.70 -89.70 -0.60 4.43 16 38 H 0.10 0.38 8.05 -2.39 -0.02 0.37 16 39 H 0.14 0.87 7.44 -2.38 -0.02 0.85 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.12 0.64 7.79 -2.39 -0.02 0.62 16 42 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.10 0.58 7.92 -2.39 -0.02 0.56 16 45 H 0.06 0.91 7.69 -2.38 -0.02 0.89 16 Total: -1.00 -84.95 396.98 -0.94 -85.89 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.26 Total: 15.37 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 9.60 Total: 12.17 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -11.94 Total: -126.26 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.80 Total: -23.56 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -84.95 -0.94 -85.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480425144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.090 kcal (2) G-P(sol) polarization free energy of solvation -84.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds