Wall clock time and date at job start Wed Apr 1 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47522 * 2 1 4 4 N 1.46500 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99785 * 275.30602 * 4 3 2 6 6 H 1.08000 * 119.99567 * 37.58239 * 5 4 3 7 7 C 1.38804 * 119.99957 * 217.57647 * 5 4 3 8 8 N 1.31624 * 120.00276 * 21.43221 * 7 5 4 9 9 Si 1.86805 * 119.99998 * 201.42547 * 7 5 4 10 10 H 1.48497 * 109.46656 * 90.00326 * 9 7 5 11 11 H 1.48498 * 109.46935 * 210.00431 * 9 7 5 12 12 H 1.48503 * 109.47034 * 330.00447 * 9 7 5 13 13 C 1.46499 * 120.00126 * 95.30962 * 4 3 2 14 14 C 1.53005 * 109.46742 * 269.99662 * 13 4 3 15 15 N 1.46499 * 109.46742 * 179.97438 * 14 13 4 16 16 C 1.34781 * 119.99970 * 180.02562 * 15 14 13 17 17 O 1.21276 * 119.99606 * 359.97438 * 16 15 14 18 18 C 1.50694 * 119.99885 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47095 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47514 * 179.97438 * 19 18 16 21 21 C 1.41284 * 128.01984 * 269.70941 * 20 19 18 22 22 C 1.50700 * 126.78344 * 359.97438 * 21 20 19 23 23 N 1.30209 * 106.42313 * 179.83882 * 21 20 19 24 24 O 1.20915 * 111.64879 * 0.44479 * 23 21 20 25 25 C 1.34068 * 111.55069 * 359.71258 * 24 23 21 26 26 Cl 1.73605 * 126.79519 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47607 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46353 * 300.00159 * 1 2 3 29 29 H 1.09000 * 109.47197 * 59.99599 * 1 2 3 30 30 H 1.09005 * 109.46353 * 239.99841 * 2 1 3 31 31 H 1.09000 * 109.47197 * 120.00401 * 2 1 3 32 32 H 1.08997 * 109.47144 * 59.99680 * 3 2 1 33 33 H 1.09004 * 109.46889 * 300.00011 * 3 2 1 34 34 H 0.96994 * 120.00050 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47086 * 150.00498 * 13 4 3 36 36 H 1.08999 * 109.47279 * 29.99940 * 13 4 3 37 37 H 1.08995 * 109.46673 * 60.00763 * 14 13 4 38 38 H 1.08999 * 109.47461 * 300.00167 * 14 13 4 39 39 H 0.97008 * 120.00084 * 0.02562 * 15 14 13 40 40 H 1.09000 * 109.47526 * 299.99329 * 18 16 15 41 41 H 1.09002 * 109.47477 * 59.99796 * 18 16 15 42 42 H 1.09008 * 109.47298 * 300.00045 * 19 18 16 43 43 H 1.09004 * 109.47215 * 60.00097 * 19 18 16 44 44 H 1.09003 * 109.47095 * 90.00420 * 22 21 20 45 45 H 1.09005 * 109.47307 * 210.00119 * 22 21 20 46 46 H 1.08998 * 109.47543 * 330.00103 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1903 1.3324 1.1800 6 1 3.8186 0.6868 1.9619 7 6 5.3625 2.0507 1.3716 8 7 5.6027 3.1235 0.6479 9 14 6.5990 1.4949 2.6568 10 1 7.5686 0.5562 2.0372 11 1 7.3246 2.6762 3.1890 12 1 5.8867 0.8105 3.7656 13 6 4.2371 1.5599 -1.2642 14 6 4.4918 0.1644 -1.8376 15 7 5.2233 0.2820 -3.1015 16 6 5.5594 -0.8261 -3.7912 17 8 5.2567 -1.9205 -3.3652 18 6 6.3123 -0.7052 -5.0910 19 6 6.5670 -2.1005 -5.6646 20 6 7.3194 -1.9796 -6.9646 21 6 6.7895 -1.8640 -8.2692 22 6 5.3322 -1.8364 -8.6521 23 7 7.8091 -1.7832 -9.0749 24 8 8.8574 -1.8395 -8.4749 25 6 8.6627 -1.9625 -7.1541 26 17 9.8873 -2.0765 -5.9288 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 6.4220 3.6252 0.7815 35 1 5.1897 2.0593 -1.0871 36 1 3.6478 2.1419 -1.9727 37 1 3.5393 -0.3350 -2.0147 38 1 5.0811 -0.4176 -1.1291 39 1 5.4657 1.1574 -3.4420 40 1 5.7232 -0.1228 -5.7994 41 1 7.2651 -0.2061 -4.9140 42 1 7.1564 -2.6827 -4.9560 43 1 5.6144 -2.6000 -5.8416 44 1 4.9759 -0.8062 -8.6518 45 1 5.2099 -2.2627 -9.6478 46 1 4.7566 -2.4201 -7.9338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481155339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:10 Heat of formation + Delta-G solvation = 19.885191 kcal Electronic energy + Delta-G solvation = -27312.702794 eV Core-core repulsion = 23266.908408 eV Total energy + Delta-G solvation = -4045.794386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -45.39388 -39.43816 -37.55679 -36.59776 -36.06546 -34.25568 -33.39413 -32.89992 -31.11650 -30.65716 -29.12607 -28.24238 -25.61503 -25.44657 -23.29998 -21.90760 -21.62260 -20.90765 -20.35290 -19.87218 -18.20778 -18.02775 -17.09530 -16.44618 -15.96348 -15.44911 -15.36424 -14.91892 -14.43039 -14.26838 -13.94359 -13.79756 -13.64824 -13.35033 -13.19484 -13.05259 -12.90947 -12.82188 -12.77135 -12.48666 -12.38955 -12.08048 -11.60140 -11.55248 -11.43745 -11.20775 -11.05713 -10.96106 -10.78202 -10.45620 -10.38982 -10.30519 -10.10943 -9.90434 -9.80325 -9.64159 -9.39471 -8.60356 -8.47314 -6.65697 -5.86848 -3.45903 0.75058 0.85663 1.69995 2.90929 3.23169 3.32927 3.40763 3.42624 3.53821 3.71129 4.21159 4.43234 4.45698 4.67136 4.82231 5.03591 5.07334 5.14603 5.23897 5.27068 5.33268 5.42591 5.47932 5.64510 5.65434 5.74041 5.78331 5.93726 6.00049 6.09282 6.19875 6.25726 6.39810 6.51202 6.59914 6.63650 6.85363 6.95138 6.99014 7.15681 7.50481 7.71031 7.77301 7.88965 8.44408 8.54467 9.11306 9.73065 10.30801 11.13071 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.002492 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.194472 B =11233.529329 C =12929.664519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.097 3.903 15 N -0.720 5.720 16 C 0.507 3.493 17 O -0.549 6.549 18 C -0.137 4.137 19 C -0.029 4.029 20 C -0.163 4.163 21 C 0.034 3.966 22 C -0.079 4.079 23 N -0.349 5.349 24 O 0.109 5.891 25 C -0.001 4.001 26 Cl 0.052 6.948 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.397 0.603 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -7.247 -17.256 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.010 3.990 14 C -0.028 4.028 15 N -0.370 5.370 16 C 0.293 3.707 17 O -0.427 6.427 18 C -0.177 4.177 19 C -0.067 4.067 20 C -0.167 4.167 21 C -0.125 4.125 22 C -0.136 4.136 23 N -0.055 5.055 24 O 0.041 5.959 25 C -0.091 4.091 26 Cl 0.080 6.920 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.222 -7.746 -18.093 19.806 hybrid contribution 0.920 0.064 1.315 1.606 sum 3.143 -7.682 -16.778 18.719 Atomic orbital electron populations 1.21724 0.97341 1.00406 1.00996 1.22186 0.93801 1.00936 1.01572 1.20934 0.85061 0.92967 0.98900 1.43611 0.99435 1.84820 1.02098 1.19032 1.05625 1.20371 0.93988 0.92046 1.25179 1.00824 0.94519 0.98133 1.69994 1.25609 1.14761 1.42573 0.86393 0.81648 0.77885 0.81494 1.21224 1.21695 1.20140 1.21060 1.00304 0.91231 0.86414 1.22458 0.94857 1.02718 0.82800 1.46158 1.57829 1.08525 1.24534 1.20448 0.79778 0.84734 0.85765 1.90691 1.55246 1.26586 1.70161 1.21633 1.01925 0.98535 0.95639 1.19713 1.00473 0.96914 0.89647 1.20941 0.90855 1.07500 0.97450 1.23376 0.97932 1.01909 0.89236 1.20260 0.86238 1.04018 1.03132 1.73946 0.91915 1.19947 1.19686 1.84911 1.28029 1.67608 1.15307 1.24647 0.91592 1.08170 0.84694 1.98477 1.53026 1.96209 1.44264 0.93803 0.93206 0.93477 0.92942 0.92362 0.93592 0.94785 0.93518 0.88419 0.95366 0.93015 0.91792 0.76917 0.88824 0.88828 0.89118 0.88942 0.89577 0.90178 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.15 -2.59 6.23 -26.73 -0.17 -2.76 16 3 C 0.15 3.00 5.72 -4.05 -0.02 2.97 16 4 N -0.58 -13.68 2.43 -173.24 -0.42 -14.10 16 5 C -0.26 -6.84 9.45 -15.06 -0.14 -6.98 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -24.26 11.47 55.49 0.64 -23.62 16 9 Si 0.90 21.08 29.60 -169.99 -5.03 16.05 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.14 2.94 5.45 -4.04 -0.02 2.92 16 14 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 15 N -0.72 -11.13 5.56 -60.30 -0.33 -11.46 16 16 C 0.51 7.55 7.83 -10.99 -0.09 7.47 16 17 O -0.55 -10.28 15.98 5.56 0.09 -10.19 16 18 C -0.14 -1.41 5.68 -27.89 -0.16 -1.57 16 19 C -0.03 -0.30 4.90 -27.89 -0.14 -0.43 16 20 C -0.16 -1.60 5.58 -104.38 -0.58 -2.18 16 21 C 0.03 0.33 7.32 -82.12 -0.60 -0.27 16 22 C -0.08 -0.53 10.39 36.01 0.37 -0.16 16 23 N -0.35 -3.94 12.07 33.43 0.40 -3.53 16 24 O 0.11 1.19 11.20 17.11 0.19 1.38 16 25 C 0.00 -0.01 8.12 29.82 0.24 0.23 16 26 Cl 0.05 0.47 29.23 -51.86 -1.52 -1.04 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 34 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.10 2.36 5.52 -51.93 -0.29 2.08 16 36 H 0.03 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.05 1.03 6.64 -51.93 -0.34 0.68 16 38 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.40 5.13 8.47 -40.82 -0.35 4.78 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.01 8.10 -51.92 -0.42 0.59 16 43 H 0.09 0.92 7.60 -51.93 -0.39 0.53 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.51 7.65 -51.93 -0.40 0.11 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -30.37 400.31 -8.12 -38.49 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.12 Total: 2.37 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.05 Total: -0.39 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.28 Total: -52.71 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.28 Total: -8.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.52 Total: -1.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.37 -8.12 -38.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481155339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.372 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds