Wall clock time and date at job start Wed Apr 1 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47522 * 2 1 4 4 N 1.46500 * 109.47214 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99785 * 275.30602 * 4 3 2 6 6 H 1.08000 * 119.99567 * 37.58239 * 5 4 3 7 7 C 1.38804 * 119.99957 * 217.57647 * 5 4 3 8 8 N 1.31624 * 120.00276 * 21.43221 * 7 5 4 9 9 Si 1.86805 * 119.99998 * 201.42547 * 7 5 4 10 10 H 1.48497 * 109.46656 * 90.00326 * 9 7 5 11 11 H 1.48498 * 109.46935 * 210.00431 * 9 7 5 12 12 H 1.48503 * 109.47034 * 330.00447 * 9 7 5 13 13 C 1.46499 * 120.00126 * 95.30962 * 4 3 2 14 14 C 1.53005 * 109.46742 * 269.99662 * 13 4 3 15 15 N 1.46499 * 109.46742 * 179.97438 * 14 13 4 16 16 C 1.34781 * 119.99970 * 180.02562 * 15 14 13 17 17 O 1.21276 * 119.99606 * 359.97438 * 16 15 14 18 18 C 1.50694 * 119.99885 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47095 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47514 * 179.97438 * 19 18 16 21 21 C 1.41284 * 128.01984 * 269.70941 * 20 19 18 22 22 C 1.50700 * 126.78344 * 359.97438 * 21 20 19 23 23 N 1.30209 * 106.42313 * 179.83882 * 21 20 19 24 24 O 1.20915 * 111.64879 * 0.44479 * 23 21 20 25 25 C 1.34068 * 111.55069 * 359.71258 * 24 23 21 26 26 Cl 1.73605 * 126.79519 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47607 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46353 * 300.00159 * 1 2 3 29 29 H 1.09000 * 109.47197 * 59.99599 * 1 2 3 30 30 H 1.09005 * 109.46353 * 239.99841 * 2 1 3 31 31 H 1.09000 * 109.47197 * 120.00401 * 2 1 3 32 32 H 1.08997 * 109.47144 * 59.99680 * 3 2 1 33 33 H 1.09004 * 109.46889 * 300.00011 * 3 2 1 34 34 H 0.96994 * 120.00050 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47086 * 150.00498 * 13 4 3 36 36 H 1.08999 * 109.47279 * 29.99940 * 13 4 3 37 37 H 1.08995 * 109.46673 * 60.00763 * 14 13 4 38 38 H 1.08999 * 109.47461 * 300.00167 * 14 13 4 39 39 H 0.97008 * 120.00084 * 0.02562 * 15 14 13 40 40 H 1.09000 * 109.47526 * 299.99329 * 18 16 15 41 41 H 1.09002 * 109.47477 * 59.99796 * 18 16 15 42 42 H 1.09008 * 109.47298 * 300.00045 * 19 18 16 43 43 H 1.09004 * 109.47215 * 60.00097 * 19 18 16 44 44 H 1.09003 * 109.47095 * 90.00420 * 22 21 20 45 45 H 1.09005 * 109.47307 * 210.00119 * 22 21 20 46 46 H 1.08998 * 109.47543 * 330.00103 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1903 1.3324 1.1800 6 1 3.8186 0.6868 1.9619 7 6 5.3625 2.0507 1.3716 8 7 5.6027 3.1235 0.6479 9 14 6.5990 1.4949 2.6568 10 1 7.5686 0.5562 2.0372 11 1 7.3246 2.6762 3.1890 12 1 5.8867 0.8105 3.7656 13 6 4.2371 1.5599 -1.2642 14 6 4.4918 0.1644 -1.8376 15 7 5.2233 0.2820 -3.1015 16 6 5.5594 -0.8261 -3.7912 17 8 5.2567 -1.9205 -3.3652 18 6 6.3123 -0.7052 -5.0910 19 6 6.5670 -2.1005 -5.6646 20 6 7.3194 -1.9796 -6.9646 21 6 6.7895 -1.8640 -8.2692 22 6 5.3322 -1.8364 -8.6521 23 7 7.8091 -1.7832 -9.0749 24 8 8.8574 -1.8395 -8.4749 25 6 8.6627 -1.9625 -7.1541 26 17 9.8873 -2.0765 -5.9288 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 6.4220 3.6252 0.7815 35 1 5.1897 2.0593 -1.0871 36 1 3.6478 2.1419 -1.9727 37 1 3.5393 -0.3350 -2.0147 38 1 5.0811 -0.4176 -1.1291 39 1 5.4657 1.1574 -3.4420 40 1 5.7232 -0.1228 -5.7994 41 1 7.2651 -0.2061 -4.9140 42 1 7.1564 -2.6827 -4.9560 43 1 5.6144 -2.6000 -5.8416 44 1 4.9759 -0.8062 -8.6518 45 1 5.2099 -2.2627 -9.6478 46 1 4.7566 -2.4201 -7.9338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481155339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:09 Heat of formation + Delta-G solvation = 2.798244 kcal Electronic energy + Delta-G solvation = -27313.443739 eV Core-core repulsion = 23266.908408 eV Total energy + Delta-G solvation = -4046.535332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.16459 -40.70498 -38.33910 -38.22879 -36.91319 -35.67279 -34.58991 -34.21049 -32.64407 -31.77392 -29.86875 -29.59833 -27.33179 -26.53657 -24.80990 -22.79156 -22.54810 -22.31730 -21.86794 -21.19092 -19.03884 -18.81409 -18.67471 -17.83421 -17.06512 -16.89963 -16.72457 -16.27008 -15.94385 -15.68391 -15.21926 -14.85005 -14.70124 -14.40980 -14.30695 -14.24929 -13.93628 -13.77424 -13.64008 -13.54482 -13.32018 -13.24387 -13.05454 -12.90616 -12.86497 -12.61986 -12.51629 -12.23517 -12.19391 -12.01314 -11.85741 -11.83373 -11.64852 -11.31332 -11.05990 -10.85982 -10.52697 -10.29639 -9.96136 -8.58100 -7.85045 -5.48106 -0.00692 0.07479 0.96263 1.43789 1.47939 1.54449 1.71135 2.25114 2.49053 2.54878 2.99228 3.22148 3.45801 3.67656 3.72182 3.83541 4.01880 4.20678 4.25741 4.27384 4.37358 4.42510 4.51879 4.61069 4.66468 4.68934 4.71102 4.76760 4.77686 4.88167 4.98693 5.01042 5.03167 5.19011 5.23852 5.26197 5.28824 5.45325 5.48753 5.64373 5.67444 5.77112 6.45654 6.67004 6.94825 7.15783 7.34005 7.84006 8.35638 9.10202 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.002492 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.194472 B =11233.529329 C =12929.664519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.268 4.268 6 H 0.050 0.950 7 C -0.027 4.027 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.273 1.273 13 C 0.145 3.855 14 C 0.120 3.880 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.588 6.588 18 C -0.125 4.125 19 C -0.024 4.024 20 C -0.164 4.164 21 C 0.039 3.961 22 C -0.082 4.082 23 N -0.370 5.370 24 O 0.096 5.904 25 C -0.002 4.002 26 Cl 0.057 6.943 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.027 0.973 39 H 0.412 0.588 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -7.283 -18.517 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.319 5.319 5 C -0.399 4.399 6 H 0.068 0.932 7 C -0.225 4.225 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.198 1.198 13 C 0.017 3.983 14 C -0.007 4.007 15 N -0.367 5.367 16 C 0.296 3.704 17 O -0.469 6.469 18 C -0.164 4.164 19 C -0.062 4.062 20 C -0.168 4.168 21 C -0.119 4.119 22 C -0.139 4.139 23 N -0.079 5.079 24 O 0.032 5.968 25 C -0.092 4.092 26 Cl 0.086 6.914 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.248 0.752 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.451 -7.772 -19.371 20.923 hybrid contribution 1.127 0.055 1.692 2.034 sum 2.579 -7.718 -17.679 19.462 Atomic orbital electron populations 1.21657 0.94279 1.01776 1.01987 1.22010 0.96386 0.98744 1.00264 1.21044 0.83371 0.94540 0.99026 1.43855 1.00861 1.85096 1.02049 1.19141 1.06176 1.19791 0.94773 0.93206 1.25721 1.02082 0.94730 0.99983 1.70079 1.25852 1.15487 1.43861 0.85571 0.79690 0.77270 0.79750 1.21559 1.21577 1.19768 1.20932 0.99121 0.92103 0.86096 1.21872 0.94403 1.00631 0.83761 1.46018 1.57613 1.09827 1.23270 1.21205 0.78962 0.83593 0.86676 1.90678 1.56781 1.28071 1.71402 1.21614 1.02204 0.99289 0.93327 1.19621 1.00494 0.96652 0.89447 1.20887 0.90663 1.07886 0.97398 1.23848 0.98929 1.00345 0.88822 1.20439 0.84383 1.05247 1.03801 1.73954 0.92324 1.21319 1.20337 1.84894 1.28216 1.68102 1.15573 1.24804 0.91997 1.07752 0.84669 1.98481 1.52890 1.96147 1.43902 0.92268 0.92717 0.91997 0.93470 0.94437 0.94808 0.93173 0.93718 0.90941 0.93725 0.93338 0.95488 0.75186 0.85790 0.87465 0.90341 0.88565 0.88077 0.89542 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.00 16 2 C -0.13 -4.71 6.23 30.59 0.19 -4.52 16 3 C 0.15 5.84 5.72 86.38 0.49 6.33 16 4 N -0.60 -28.39 2.43 -702.00 -1.71 -30.10 16 5 C -0.27 -14.32 9.45 84.03 0.79 -13.52 16 6 H 0.05 2.72 7.92 -2.91 -0.02 2.70 16 7 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 8 N -0.91 -50.12 11.47 21.65 0.25 -49.88 16 9 Si 0.95 43.78 29.60 68.60 2.03 45.81 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.14 6.18 5.45 86.38 0.47 6.65 16 14 C 0.12 4.66 6.00 86.38 0.52 5.18 16 15 N -0.72 -21.32 5.56 -463.07 -2.57 -23.89 16 16 C 0.51 14.43 7.83 87.65 0.69 15.11 16 17 O -0.59 -21.78 15.98 -3.02 -0.05 -21.83 16 18 C -0.12 -2.25 5.68 29.85 0.17 -2.08 16 19 C -0.02 -0.44 4.90 29.85 0.15 -0.30 16 20 C -0.16 -2.93 5.58 -19.71 -0.11 -3.04 16 21 C 0.04 0.68 7.32 43.55 0.32 1.00 16 22 C -0.08 -0.88 10.39 71.24 0.74 -0.14 16 23 N -0.37 -7.90 12.07 -49.44 -0.60 -8.49 16 24 O 0.10 2.03 11.20 71.38 0.80 2.83 16 25 C 0.00 -0.04 8.12 67.23 0.55 0.50 16 26 Cl 0.06 0.99 29.23 -2.72 -0.08 0.91 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.69 6.64 -2.38 -0.02 1.67 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.41 8.08 -2.39 -0.02 1.40 16 33 H 0.05 1.83 7.83 -2.39 -0.02 1.81 16 34 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.07 3.54 5.52 -2.38 -0.01 3.52 16 36 H 0.04 1.73 7.86 -2.39 -0.02 1.72 16 37 H 0.05 1.91 6.64 -2.39 -0.02 1.90 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 9.90 8.47 -92.70 -0.79 9.12 16 40 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.66 8.10 -2.38 -0.02 1.65 16 43 H 0.10 1.72 7.60 -2.38 -0.02 1.71 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.10 0.87 7.65 -2.39 -0.02 0.85 16 Total: -1.00 -66.10 400.31 4.38 -61.72 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.21 Total: 15.76 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.10 Total: 7.15 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.63 Total: -112.36 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.75 Total: -18.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: 0.99 SS G_CDS: -0.08 Total: 0.91 kcal Total: -66.10 4.38 -61.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481155339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.519 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds