Wall clock time and date at job start Wed Apr 1 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30007 * 127.33562 * 2 1 4 4 O 1.20660 * 112.29727 * 179.83518 * 3 2 1 5 5 C 1.33493 * 113.15803 * 0.45693 * 4 3 2 6 6 C 1.50700 * 126.82918 * 179.70628 * 5 4 3 7 7 F 1.39896 * 109.47061 * 120.02423 * 6 5 4 8 8 F 1.39895 * 109.47283 * 240.02907 * 6 5 4 9 9 C 1.37359 * 106.34006 * 359.73252 * 5 4 3 10 10 C 1.47392 * 128.56062 * 179.97438 * 9 5 4 11 11 O 1.21611 * 120.00359 * 270.03756 * 10 9 5 12 12 N 1.34789 * 120.00062 * 90.04575 * 10 9 5 13 13 C 1.46499 * 120.00080 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.01372 * 325.06074 * 13 12 10 15 15 C 1.54266 * 110.03057 * 86.44793 * 13 12 10 16 16 C 1.54897 * 104.19374 * 142.89506 * 15 13 12 17 17 C 1.54897 * 102.74813 * 322.06030 * 16 15 13 18 18 C 1.53866 * 110.03074 * 203.61818 * 13 12 10 19 19 H 1.09007 * 110.03223 * 121.43223 * 18 13 12 20 20 C 1.52995 * 110.03394 * 359.97438 * 18 13 12 21 21 N 1.46507 * 109.47337 * 175.00050 * 20 18 13 22 22 C 1.36934 * 119.99978 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00421 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99909 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00034 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00269 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47220 * 89.99720 * 26 24 22 28 28 H 1.48503 * 109.47099 * 210.00106 * 26 24 22 29 29 H 1.48502 * 109.46988 * 329.99937 * 26 24 22 30 30 H 1.08999 * 109.47015 * 269.68510 * 1 2 3 31 31 H 1.09000 * 109.46646 * 29.67663 * 1 2 3 32 32 H 1.09000 * 109.47248 * 149.68380 * 1 2 3 33 33 H 1.09003 * 109.46988 * 0.03085 * 6 5 4 34 34 H 0.96993 * 119.99515 * 359.97438 * 12 10 9 35 35 H 1.08995 * 110.49089 * 261.56856 * 15 13 12 36 36 H 1.09005 * 110.48652 * 24.08895 * 15 13 12 37 37 H 1.08996 * 110.75712 * 80.37257 * 16 15 13 38 38 H 1.09001 * 110.75606 * 203.74738 * 16 15 13 39 39 H 1.08991 * 110.48763 * 156.61997 * 17 16 15 40 40 H 1.09002 * 110.48084 * 279.13479 * 17 16 15 41 41 H 1.09001 * 109.47100 * 295.00036 * 20 18 13 42 42 H 1.08999 * 109.47204 * 55.00237 * 20 18 13 43 43 H 0.96998 * 119.99873 * 359.97438 * 21 20 18 44 44 H 0.96996 * 120.00001 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0032 5 6 3.6494 -0.6009 -0.0038 6 6 4.9711 -1.3248 -0.0086 7 9 5.0639 -2.1336 1.1291 8 9 5.0629 -2.1207 -1.1554 9 6 2.3991 -1.1697 -0.0065 10 6 2.0400 -2.5992 -0.0145 11 8 1.8921 -3.1831 -1.0709 12 7 1.8755 -3.2592 1.1491 13 6 1.5180 -4.6799 1.1412 14 1 0.8583 -4.8939 0.3003 15 6 2.7920 -5.5448 1.0467 16 6 2.4884 -6.7679 1.9474 17 6 1.7060 -6.1381 3.1267 18 6 0.8277 -5.0571 2.4635 19 1 -0.1676 -5.4549 2.2649 20 6 0.7312 -3.8305 3.3729 21 7 -0.0321 -4.1730 4.5756 22 6 -0.2501 -3.2264 5.5408 23 1 0.1410 -2.2275 5.4157 24 6 -0.9728 -3.5511 6.6806 25 7 -1.4490 -4.7686 6.8333 26 14 -1.2696 -2.2601 7.9976 27 1 -2.5322 -1.5354 7.7048 28 1 -1.3739 -2.9206 9.3236 29 1 -0.1385 -1.2980 8.0115 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3632 0.8929 -0.5088 32 1 -0.3634 -0.8871 -0.5187 33 1 5.7834 -0.5979 -0.0048 34 1 1.9937 -2.7936 1.9917 35 1 2.9625 -5.8618 0.0179 36 1 3.6547 -4.9956 1.4238 37 1 1.8710 -7.4936 1.4181 38 1 3.4121 -7.2279 2.2985 39 1 1.0842 -6.8879 3.6156 40 1 2.3932 -5.6876 3.8429 41 1 1.7332 -3.5096 3.6576 42 1 0.2283 -3.0227 2.8412 43 1 -0.3836 -5.0700 4.6878 44 1 -1.9537 -4.9956 7.6299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482681908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:49 Heat of formation + Delta-G solvation = -63.313476 kcal Electronic energy + Delta-G solvation = -31271.849512 eV Core-core repulsion = 26670.650681 eV Total energy + Delta-G solvation = -4601.198831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.54063 -47.54445 -45.34637 -40.16957 -38.08423 -34.98692 -34.42425 -33.76026 -33.18002 -31.46221 -29.19491 -28.63702 -28.10518 -27.02577 -24.78891 -24.38170 -22.55163 -21.53498 -20.84829 -20.43428 -19.13242 -18.73386 -18.44709 -17.86696 -17.60093 -17.39610 -17.09895 -16.22523 -15.76684 -15.24653 -14.88096 -14.58589 -14.38605 -14.27337 -13.90567 -13.86993 -13.80116 -13.65464 -13.61220 -13.37566 -13.06806 -13.00061 -12.95430 -12.24176 -11.95508 -11.75639 -11.59940 -11.39950 -10.91375 -10.89900 -10.83535 -10.53742 -10.47472 -10.41856 -10.31291 -10.29236 -10.11833 -10.00672 -9.74538 -9.10544 -8.91592 -6.99510 -5.82532 -3.11770 0.59821 1.50141 1.86379 2.20448 2.96915 3.39138 3.41087 3.44556 3.46100 3.52498 3.73693 4.06147 4.23214 4.34576 4.48489 4.61513 4.71076 4.77044 4.79544 5.06863 5.15561 5.26217 5.35036 5.41468 5.48860 5.56857 5.62873 5.70478 5.76040 5.82197 5.88610 6.03888 6.09795 6.17177 6.24279 6.40403 6.49906 6.55205 6.63300 6.75661 7.36375 7.62639 7.69272 7.99355 8.35865 9.47605 10.04133 10.39068 11.40070 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.003750 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.628456 B = 7464.552408 C = 8932.259187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.059 3.941 3 N -0.336 5.336 4 O 0.124 5.876 5 C -0.085 4.085 6 C 0.361 3.639 7 F -0.175 7.175 8 F -0.175 7.175 9 C -0.184 4.184 10 C 0.589 3.411 11 O -0.520 6.520 12 N -0.701 5.701 13 C 0.149 3.851 14 H 0.092 0.908 15 C -0.132 4.132 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.107 4.107 19 H 0.084 0.916 20 C 0.157 3.843 21 N -0.727 5.727 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 5.044 -15.598 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.038 5.038 4 O 0.057 5.943 5 C -0.149 4.149 6 C 0.306 3.694 7 F -0.156 7.156 8 F -0.155 7.155 9 C -0.191 4.191 10 C 0.372 3.628 11 O -0.396 6.396 12 N -0.354 5.354 13 C 0.044 3.956 14 H 0.110 0.890 15 C -0.171 4.171 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.126 4.126 19 H 0.103 0.897 20 C 0.029 3.971 21 N -0.372 5.372 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.163 0.837 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.899 6.041 -16.239 21.018 hybrid contribution -0.414 -0.144 1.243 1.318 sum 11.484 5.897 -14.996 19.787 Atomic orbital electron populations 1.20350 0.84197 1.04679 1.04815 1.24897 0.99085 0.85683 1.00525 1.73618 0.88822 1.22930 1.18457 1.84554 1.21849 1.20700 1.67233 1.24935 0.97128 0.85808 1.07071 1.19212 0.92227 0.85379 0.72591 1.93127 1.96595 1.75308 1.50575 1.93133 1.96579 1.75987 1.49848 1.22295 0.92340 0.96405 1.08085 1.16848 0.77712 0.83445 0.84799 1.90842 1.50134 1.67750 1.30836 1.46371 1.68906 1.11853 1.08296 1.21776 0.96387 0.78358 0.99070 0.89011 1.22772 0.97518 0.96557 1.00247 1.22488 1.00179 0.96853 0.96647 1.22362 0.98218 0.97385 0.96949 1.22222 0.99598 0.97521 0.93281 0.89714 1.20680 0.94662 0.93696 0.88106 1.42302 1.63755 1.12929 1.18169 1.19185 1.28268 0.92529 0.97417 0.91322 1.24726 1.00827 0.96601 0.98527 1.69655 1.41225 1.18130 1.28913 0.86215 0.77981 0.80620 0.81511 1.21694 1.21700 1.20778 0.88632 0.89499 0.89289 0.83725 0.75029 0.91349 0.91071 0.91489 0.91511 0.91092 0.90933 0.96497 0.96298 0.78083 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.49 36.01 0.38 -0.45 16 2 C 0.06 0.73 7.59 -79.77 -0.61 0.12 16 3 N -0.34 -4.14 12.01 34.78 0.42 -3.72 16 4 O 0.12 1.34 11.06 18.65 0.21 1.55 16 5 C -0.08 -0.91 6.98 -34.63 -0.24 -1.16 16 6 C 0.36 3.05 5.67 36.01 0.20 3.25 16 7 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 8 F -0.17 -1.88 17.32 2.25 0.04 -1.84 16 9 C -0.18 -2.37 6.24 -102.90 -0.64 -3.01 16 10 C 0.59 8.49 7.62 -12.53 -0.10 8.39 16 11 O -0.52 -8.90 16.78 5.27 0.09 -8.81 16 12 N -0.70 -9.56 4.42 -53.81 -0.24 -9.80 16 13 C 0.15 2.03 3.21 -66.82 -0.21 1.81 16 14 H 0.09 1.30 7.61 -51.93 -0.39 0.90 16 15 C -0.13 -1.65 6.53 -25.07 -0.16 -1.81 16 16 C -0.12 -1.46 6.91 -24.73 -0.17 -1.64 16 17 C -0.11 -1.61 6.08 -25.07 -0.15 -1.76 16 18 C -0.11 -1.63 2.96 -89.51 -0.27 -1.89 16 19 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 20 C 0.16 2.90 4.18 -4.04 -0.02 2.88 16 21 N -0.73 -17.48 5.45 -59.91 -0.33 -17.80 16 22 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 26 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.41 5.57 5.82 -40.82 -0.24 5.34 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 41 H 0.02 0.32 7.12 -51.93 -0.37 -0.05 16 42 H 0.02 0.36 7.40 -51.93 -0.38 -0.03 16 43 H 0.39 9.79 7.55 -40.82 -0.31 9.48 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -32.53 378.99 -6.46 -38.99 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.87 Total: 9.65 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.23 Total: -2.36 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.58 Total: -58.05 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.29 Total: -7.26 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.53 -6.46 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482681908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.322 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds