Wall clock time and date at job start Wed Apr 1 2020 02:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46759 * 2 1 4 4 C 1.52996 * 109.47162 * 119.99861 * 2 1 3 5 5 C 1.52992 * 109.47420 * 185.00184 * 4 2 1 6 6 N 1.46903 * 109.47410 * 180.02562 * 5 4 2 7 7 C 1.46905 * 111.00084 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46955 * 180.02562 * 7 6 5 9 9 N 1.30732 * 125.53836 * 0.02562 * 8 7 6 10 10 C 1.34455 * 109.94073 * 180.02562 * 9 8 7 11 11 O 1.21724 * 125.92078 * 180.02562 * 10 9 8 12 12 N 1.34994 * 108.15253 * 0.02562 * 10 9 8 13 13 C 1.46496 * 126.86023 * 179.97438 * 12 10 9 14 14 N 1.35152 * 125.53551 * 180.02562 * 8 7 6 15 15 H 0.96997 * 126.65354 * 359.95351 * 14 8 7 16 16 N 1.46501 * 109.47418 * 240.00030 * 2 1 3 17 17 C 1.34780 * 119.99950 * 84.99685 * 16 2 1 18 18 O 1.21280 * 119.99942 * 0.02562 * 17 16 2 19 19 C 1.50697 * 119.99956 * 180.02562 * 17 16 2 20 20 S 1.80992 * 109.47028 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99965 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99860 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99983 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00502 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99862 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47310 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47227 * 120.00062 * 25 23 21 28 28 H 1.48498 * 109.47467 * 239.99808 * 25 23 21 29 29 H 1.08998 * 109.47086 * 60.00317 * 1 2 3 30 30 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47199 * 300.00178 * 1 2 3 32 32 H 1.09004 * 109.47243 * 64.99916 * 4 2 1 33 33 H 1.08998 * 109.47110 * 305.00502 * 4 2 1 34 34 H 1.09002 * 109.47472 * 60.00071 * 5 4 2 35 35 H 1.08998 * 109.47239 * 300.00239 * 5 4 2 36 36 H 1.00901 * 111.00114 * 303.95164 * 6 5 4 37 37 H 1.09003 * 109.46915 * 60.00327 * 7 6 5 38 38 H 1.08999 * 109.46937 * 300.00118 * 7 6 5 39 39 H 1.09005 * 109.46997 * 0.02562 * 13 12 10 40 40 H 1.09000 * 109.47367 * 120.02170 * 13 12 10 41 41 H 1.08999 * 109.47291 * 240.01891 * 13 12 10 42 42 H 0.96997 * 119.99718 * 265.00545 * 16 2 1 43 43 H 1.09001 * 109.47051 * 300.00382 * 19 17 16 44 44 H 1.08998 * 109.47217 * 60.00202 * 19 17 16 45 45 H 0.96992 * 120.00762 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5647 -0.6132 1.3137 6 7 4.0545 -1.3062 2.5129 7 6 5.5181 -1.2237 2.6078 8 6 5.9826 -1.9446 3.8470 9 7 5.2085 -2.5518 4.7080 10 6 5.9502 -3.0880 5.6929 11 8 5.5261 -3.7176 6.6444 12 7 7.2469 -2.8071 5.4436 13 6 8.4022 -3.1956 6.2562 14 7 7.2670 -2.0684 4.2489 15 1 8.0509 -1.7155 3.7996 16 7 2.0184 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8590 1.1586 -2.4115 19 6 2.6490 -0.7287 -3.5877 20 16 2.7106 0.4345 -4.9730 21 6 3.3138 -0.6307 -6.2403 22 1 3.5223 -1.6674 -6.0205 23 6 3.5199 -0.1378 -7.5214 24 7 3.2653 1.1255 -7.7895 25 14 4.1600 -1.2670 -8.8648 26 1 4.3660 -2.6290 -8.3102 27 1 3.1726 -1.3281 -9.9723 28 1 5.4498 -0.7416 -9.3802 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1369 34 1 3.8532 0.4370 1.3574 35 1 3.9994 -1.0727 0.4260 36 1 3.6167 -0.9414 3.3455 37 1 5.8204 -0.1777 2.6607 38 1 5.9659 -1.6873 1.7288 39 1 8.0627 -3.7641 7.1221 40 1 9.0759 -3.8105 5.6594 41 1 8.9277 -2.3015 6.5917 42 1 2.2490 -1.6317 -1.1526 43 1 3.6481 -1.1213 -3.3985 44 1 1.9761 -1.5505 -3.8326 45 1 3.4089 1.4698 -8.6848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482810551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:12 Heat of formation + Delta-G solvation = 21.762857 kcal Electronic energy + Delta-G solvation = -26148.940664 eV Core-core repulsion = 22137.564157 eV Total energy + Delta-G solvation = -4011.376507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70160 -39.46679 -37.90921 -37.17991 -35.64009 -34.36044 -32.44707 -32.11370 -31.78024 -30.04845 -28.50543 -27.63965 -25.78900 -25.49464 -22.87565 -22.26663 -21.50323 -21.25323 -20.28709 -18.95384 -17.85695 -17.25547 -16.80115 -16.56058 -16.21666 -16.01791 -15.91892 -15.14881 -14.84420 -14.81904 -14.65104 -14.32574 -14.03790 -13.73215 -13.64673 -13.40366 -13.28071 -13.18419 -12.80240 -12.66386 -12.55490 -12.06063 -11.91336 -11.52843 -11.45670 -11.32921 -11.08887 -11.03392 -10.91199 -10.76355 -10.55831 -10.24116 -9.81620 -9.36720 -9.09461 -9.00640 -8.93288 -8.85796 -8.24217 -6.51312 -6.23566 -3.93806 0.81620 0.88915 2.97473 3.04485 3.05471 3.11141 3.19800 3.27178 3.32155 3.53752 3.73614 3.74116 4.18868 4.32086 4.49242 4.53311 4.56688 4.72618 4.81175 4.82980 4.88519 4.96829 5.11769 5.18639 5.28911 5.29942 5.36569 5.41588 5.54385 5.60679 5.66458 5.74094 5.80874 5.88847 6.08842 6.14025 6.24902 6.37577 6.60411 6.71129 6.89098 7.52599 7.58341 7.75116 7.82467 8.33803 8.64138 9.22089 10.83872 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.001746 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.240867 B =16028.689710 C =17614.126859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.123 4.123 5 C 0.058 3.942 6 N -0.672 5.672 7 C 0.126 3.874 8 C 0.400 3.600 9 N -0.551 5.551 10 C 0.634 3.366 11 O -0.536 6.536 12 N -0.448 5.448 13 C 0.107 3.893 14 N -0.500 5.500 15 H 0.446 0.554 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.519 6.519 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.357 0.643 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -5.181 25.088 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.071 4.071 6 N -0.305 5.305 7 C -0.006 4.006 8 C 0.125 3.875 9 N -0.300 5.300 10 C 0.333 3.667 11 O -0.408 6.408 12 N -0.279 5.279 13 C -0.035 4.035 14 N -0.231 5.231 15 H 0.294 0.706 16 N -0.389 5.389 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.305 4.305 20 S 0.165 5.835 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.176 0.824 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.122 -4.354 25.520 27.133 hybrid contribution 2.433 -1.445 -0.719 2.920 sum 10.555 -5.799 24.801 27.571 Atomic orbital electron populations 1.22170 0.95275 1.02155 1.02601 1.20844 0.94100 0.97479 0.83659 0.89528 1.21840 0.94356 1.02375 0.97586 1.22057 0.95858 0.96393 0.92776 1.60175 1.02143 1.61405 1.06789 1.20593 0.91651 0.97642 0.90704 1.23909 0.79299 0.89859 0.94417 1.71898 1.30075 1.21505 1.06487 1.18433 0.78340 0.82781 0.87132 1.90971 1.73770 1.44438 1.31585 1.49502 1.11127 1.51685 1.15566 1.21885 0.85848 1.01057 0.94705 1.44816 1.09768 1.51159 1.17395 0.70638 1.46144 1.69253 1.13932 1.09543 1.20287 0.76847 0.87217 0.83797 1.90697 1.48380 1.15826 1.84405 1.23535 1.03614 1.04844 0.98462 1.85388 1.86343 1.12873 0.98874 1.22915 1.50790 0.98194 0.96411 0.90889 1.24990 0.95127 0.95521 0.97955 1.70021 1.45639 1.13208 1.21423 0.86128 0.78514 0.80152 0.80766 1.19616 1.20567 1.20601 0.91697 0.92470 0.91943 0.90097 0.90362 0.94485 0.90089 0.82369 0.90943 0.86765 0.87265 0.90950 0.91002 0.76804 0.89348 0.89274 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 2 C 0.14 1.47 2.57 -67.93 -0.17 1.30 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 4 C -0.12 -0.87 5.01 -26.74 -0.13 -1.01 16 5 C 0.06 0.38 5.57 -3.83 -0.02 0.36 16 6 N -0.67 -4.25 6.25 -115.05 -0.72 -4.97 16 7 C 0.13 0.51 6.31 -4.97 -0.03 0.48 16 8 C 0.40 2.61 7.97 -155.12 -1.24 1.37 16 9 N -0.55 -6.22 10.70 -13.82 -0.15 -6.37 16 10 C 0.63 8.00 8.97 -87.01 -0.78 7.22 16 11 O -0.54 -8.87 17.69 5.17 0.09 -8.77 16 12 N -0.45 -3.39 4.06 -72.07 -0.29 -3.68 16 13 C 0.11 0.40 11.57 59.84 0.69 1.09 16 14 N -0.50 -2.19 7.36 32.73 0.24 -1.95 16 15 H 0.45 0.07 8.96 -182.31 -1.63 -1.56 16 16 N -0.73 -8.69 4.53 -53.81 -0.24 -8.94 16 17 C 0.53 9.23 7.81 -10.99 -0.09 9.15 16 18 O -0.52 -11.13 15.52 5.56 0.09 -11.04 16 19 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.53 -14.94 9.50 30.94 0.29 -14.65 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 25 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.57 7.75 -51.93 -0.40 0.17 16 36 H 0.36 2.36 8.57 -39.29 -0.34 2.03 16 37 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.11 0.51 7.80 -51.93 -0.41 0.11 16 40 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.40 3.71 8.60 -40.82 -0.35 3.36 16 43 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -40.88 400.29 -10.59 -51.47 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.14 Total: -2.15 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.00 Total: 3.20 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.43 Total: -50.94 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -40.88 -10.59 -51.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482810551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.234 kcal (2) G-P(sol) polarization free energy of solvation -40.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds