Wall clock time and date at job start Wed Apr 1 2020 02:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46759 * 2 1 4 4 C 1.52996 * 109.47162 * 119.99861 * 2 1 3 5 5 C 1.52992 * 109.47420 * 185.00184 * 4 2 1 6 6 N 1.46903 * 109.47410 * 180.02562 * 5 4 2 7 7 C 1.46905 * 111.00084 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46955 * 180.02562 * 7 6 5 9 9 N 1.30732 * 125.53836 * 0.02562 * 8 7 6 10 10 C 1.34455 * 109.94073 * 180.02562 * 9 8 7 11 11 O 1.21724 * 125.92078 * 180.02562 * 10 9 8 12 12 N 1.34994 * 108.15253 * 0.02562 * 10 9 8 13 13 C 1.46496 * 126.86023 * 179.97438 * 12 10 9 14 14 N 1.35152 * 125.53551 * 180.02562 * 8 7 6 15 15 H 0.96997 * 126.65354 * 359.95351 * 14 8 7 16 16 N 1.46501 * 109.47418 * 240.00030 * 2 1 3 17 17 C 1.34780 * 119.99950 * 84.99685 * 16 2 1 18 18 O 1.21280 * 119.99942 * 0.02562 * 17 16 2 19 19 C 1.50697 * 119.99956 * 180.02562 * 17 16 2 20 20 S 1.80992 * 109.47028 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99965 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99860 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99983 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00502 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99862 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47310 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47227 * 120.00062 * 25 23 21 28 28 H 1.48498 * 109.47467 * 239.99808 * 25 23 21 29 29 H 1.08998 * 109.47086 * 60.00317 * 1 2 3 30 30 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47199 * 300.00178 * 1 2 3 32 32 H 1.09004 * 109.47243 * 64.99916 * 4 2 1 33 33 H 1.08998 * 109.47110 * 305.00502 * 4 2 1 34 34 H 1.09002 * 109.47472 * 60.00071 * 5 4 2 35 35 H 1.08998 * 109.47239 * 300.00239 * 5 4 2 36 36 H 1.00901 * 111.00114 * 303.95164 * 6 5 4 37 37 H 1.09003 * 109.46915 * 60.00327 * 7 6 5 38 38 H 1.08999 * 109.46937 * 300.00118 * 7 6 5 39 39 H 1.09005 * 109.46997 * 0.02562 * 13 12 10 40 40 H 1.09000 * 109.47367 * 120.02170 * 13 12 10 41 41 H 1.08999 * 109.47291 * 240.01891 * 13 12 10 42 42 H 0.96997 * 119.99718 * 265.00545 * 16 2 1 43 43 H 1.09001 * 109.47051 * 300.00382 * 19 17 16 44 44 H 1.08998 * 109.47217 * 60.00202 * 19 17 16 45 45 H 0.96992 * 120.00762 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5647 -0.6132 1.3137 6 7 4.0545 -1.3062 2.5129 7 6 5.5181 -1.2237 2.6078 8 6 5.9826 -1.9446 3.8470 9 7 5.2085 -2.5518 4.7080 10 6 5.9502 -3.0880 5.6929 11 8 5.5261 -3.7176 6.6444 12 7 7.2469 -2.8071 5.4436 13 6 8.4022 -3.1956 6.2562 14 7 7.2670 -2.0684 4.2489 15 1 8.0509 -1.7155 3.7996 16 7 2.0184 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8590 1.1586 -2.4115 19 6 2.6490 -0.7287 -3.5877 20 16 2.7106 0.4345 -4.9730 21 6 3.3138 -0.6307 -6.2403 22 1 3.5223 -1.6674 -6.0205 23 6 3.5199 -0.1378 -7.5214 24 7 3.2653 1.1255 -7.7895 25 14 4.1600 -1.2670 -8.8648 26 1 4.3660 -2.6290 -8.3102 27 1 3.1726 -1.3281 -9.9723 28 1 5.4498 -0.7416 -9.3802 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1369 34 1 3.8532 0.4370 1.3574 35 1 3.9994 -1.0727 0.4260 36 1 3.6167 -0.9414 3.3455 37 1 5.8204 -0.1777 2.6607 38 1 5.9659 -1.6873 1.7288 39 1 8.0627 -3.7641 7.1221 40 1 9.0759 -3.8105 5.6594 41 1 8.9277 -2.3015 6.5917 42 1 2.2490 -1.6317 -1.1526 43 1 3.6481 -1.1213 -3.3985 44 1 1.9761 -1.5505 -3.8326 45 1 3.4089 1.4698 -8.6848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482810551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:12 Heat of formation + Delta-G solvation = -12.859891 kcal Electronic energy + Delta-G solvation = -26150.442019 eV Core-core repulsion = 22137.564157 eV Total energy + Delta-G solvation = -4012.877862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.33568 -40.71171 -38.68657 -37.97330 -36.47169 -34.97792 -34.55716 -33.05173 -32.57134 -30.77820 -29.78480 -28.17201 -27.62635 -26.29791 -23.55382 -22.89010 -22.18617 -22.07386 -21.44347 -19.80068 -19.45249 -17.93254 -17.77479 -17.40624 -17.22312 -16.85485 -16.72152 -16.64134 -16.32821 -15.92281 -15.54425 -15.27814 -14.75365 -14.61612 -14.50264 -14.38742 -14.32649 -13.98648 -13.76583 -13.59902 -13.29436 -13.12883 -13.08575 -12.89654 -12.82229 -12.54864 -12.28887 -12.13105 -12.02127 -11.70207 -11.64752 -11.13478 -11.13336 -11.01528 -10.81553 -10.22041 -10.01157 -9.67878 -9.33677 -8.62183 -8.32247 -6.09161 0.31259 0.35033 1.31188 1.42761 1.50658 1.61600 1.72424 2.27475 2.29137 2.41261 2.46448 3.02018 3.05301 3.36236 3.37533 3.93301 3.98723 4.05814 4.08006 4.21350 4.24285 4.35344 4.35816 4.38991 4.55019 4.57965 4.58857 4.61983 4.64439 4.79707 4.82012 4.91672 4.94836 4.99676 5.20244 5.30779 5.40362 5.45157 5.67395 5.94248 6.22826 6.23795 6.42521 6.64011 6.91325 7.05061 7.09609 7.37293 8.77025 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.001746 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.240867 B =16028.689710 C =17614.126859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.069 0.931 4 C -0.112 4.112 5 C 0.063 3.937 6 N -0.685 5.685 7 C 0.127 3.873 8 C 0.409 3.591 9 N -0.596 5.596 10 C 0.613 3.387 11 O -0.599 6.599 12 N -0.445 5.445 13 C 0.099 3.901 14 N -0.470 5.470 15 H 0.469 0.531 16 N -0.706 5.706 17 C 0.536 3.464 18 O -0.566 6.566 19 C -0.130 4.130 20 S -0.152 6.152 21 C -0.544 4.544 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.274 1.274 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.354 0.646 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.415 0.585 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.498 -6.551 25.161 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.065 4.065 6 N -0.318 5.318 7 C -0.004 4.004 8 C 0.135 3.865 9 N -0.347 5.347 10 C 0.312 3.688 11 O -0.475 6.475 12 N -0.273 5.273 13 C -0.041 4.041 14 N -0.203 5.203 15 H 0.321 0.679 16 N -0.361 5.361 17 C 0.322 3.678 18 O -0.445 6.445 19 C -0.282 4.282 20 S 0.076 5.924 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.199 1.199 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.173 0.827 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.252 0.748 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.171 -5.732 25.593 28.130 hybrid contribution 1.865 -0.993 -0.656 2.213 sum 12.036 -6.725 24.936 28.494 Atomic orbital electron populations 1.22148 0.95184 1.02706 1.01933 1.20976 0.94136 0.96941 0.83898 0.91276 1.21736 0.95019 1.02176 0.96065 1.21952 0.95209 0.96521 0.92838 1.60132 1.03596 1.61559 1.06480 1.20852 0.90469 0.99111 0.89977 1.24336 0.79410 0.88640 0.94136 1.71782 1.31684 1.23593 1.07628 1.18630 0.79883 0.83213 0.87120 1.90896 1.75270 1.47423 1.33928 1.49526 1.10761 1.50675 1.16303 1.22194 0.84838 1.02678 0.94373 1.44838 1.10258 1.49334 1.15841 0.67855 1.45907 1.67267 1.14515 1.08362 1.19985 0.76702 0.86535 0.84612 1.90689 1.50808 1.17831 1.85156 1.23388 1.05571 1.03056 0.96159 1.85564 1.86724 1.17264 1.02896 1.23247 1.50583 0.98496 0.96911 0.89947 1.26096 0.95173 0.97136 1.00721 1.70182 1.46999 1.15440 1.22166 0.84934 0.77816 0.78315 0.77063 1.18019 1.20175 1.19912 0.95087 0.91261 0.89934 0.89604 0.88967 0.94309 0.90306 0.82672 0.87907 0.84681 0.88757 0.88409 0.88251 0.74821 0.87040 0.87679 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.48 71.98 0.68 -2.43 16 2 C 0.15 2.71 2.57 44.99 0.12 2.82 16 3 H 0.07 1.60 7.58 -2.39 -0.02 1.58 16 4 C -0.11 -1.29 5.01 30.59 0.15 -1.13 16 5 C 0.06 0.64 5.57 86.30 0.48 1.13 16 6 N -0.68 -6.85 6.25 -517.92 -3.24 -10.09 16 7 C 0.13 0.60 6.31 85.56 0.54 1.14 16 8 C 0.41 4.41 7.97 138.03 1.10 5.51 16 9 N -0.60 -13.20 10.70 -316.04 -3.38 -16.58 16 10 C 0.61 15.77 8.97 179.09 1.61 17.38 16 11 O -0.60 -21.06 17.69 -4.42 -0.08 -21.14 16 12 N -0.44 -6.13 4.06 -500.01 -2.03 -8.15 16 13 C 0.10 0.58 11.57 127.77 1.48 2.06 16 14 N -0.47 -2.77 7.36 -50.36 -0.37 -3.14 16 15 H 0.47 -1.74 8.96 -213.08 -1.91 -3.65 16 16 N -0.71 -15.35 4.53 -442.54 -2.00 -17.36 16 17 C 0.54 18.19 7.81 87.66 0.68 18.87 16 18 O -0.57 -24.76 15.52 -3.03 -0.05 -24.80 16 19 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 20 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 21 C -0.54 -30.37 9.50 67.95 0.65 -29.73 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 25 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 27 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.08 0.85 7.75 -2.39 -0.02 0.83 16 36 H 0.35 3.98 8.57 -89.69 -0.77 3.22 16 37 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.09 0.89 7.80 -2.38 -0.02 0.87 16 40 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.41 6.45 8.60 -92.71 -0.80 5.65 16 43 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 44 H 0.10 3.59 8.14 -2.40 -0.02 3.57 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -95.42 400.29 -4.04 -99.46 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.44 Total: 8.79 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 8.39 Total: 12.40 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -10.74 Total: -110.12 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.13 Total: -45.94 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -95.42 -4.04 -99.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482810551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.597 kcal (2) G-P(sol) polarization free energy of solvation -95.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds