Wall clock time and date at job start Wed Apr 1 2020 02:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47640 * 2 1 4 4 N 1.46502 * 109.47355 * 120.00421 * 2 1 3 5 5 C 1.36939 * 119.99645 * 274.99529 * 4 2 1 6 6 H 1.07996 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99706 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00138 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47373 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46945 * 120.00002 * 9 7 5 12 12 H 1.48496 * 109.47279 * 239.99579 * 9 7 5 13 13 C 1.50702 * 109.47189 * 240.00185 * 2 1 3 14 14 C 1.38234 * 120.00022 * 99.99441 * 13 2 1 15 15 C 1.38243 * 120.00122 * 180.02562 * 14 13 2 16 16 C 1.38237 * 119.99528 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99618 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47230 * 89.99736 * 17 16 15 19 19 C 1.34771 * 120.00110 * 179.97438 * 18 17 16 20 20 O 1.21570 * 119.99921 * 0.02562 * 19 18 17 21 21 C 1.47733 * 119.99951 * 179.97438 * 19 18 17 22 22 C 1.40150 * 120.52716 * 180.02562 * 21 19 18 23 23 C 1.38155 * 118.32278 * 180.02562 * 22 21 19 24 24 C 1.38758 * 119.28024 * 0.02562 * 23 22 21 25 25 F 1.35099 * 119.48760 * 179.97438 * 24 23 22 26 26 N 1.32146 * 121.01869 * 359.97438 * 24 23 22 27 27 C 1.31693 * 121.83785 * 0.03860 * 26 24 23 28 28 C 1.38234 * 120.00260 * 0.24660 * 16 15 14 29 29 C 1.38233 * 120.00181 * 280.02686 * 13 2 1 30 30 H 1.08993 * 109.47200 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46522 * 300.00101 * 1 2 3 32 32 H 1.08998 * 109.46808 * 59.99670 * 1 2 3 33 33 H 0.97001 * 119.99798 * 94.99753 * 4 2 1 34 34 H 0.97004 * 120.00032 * 179.97438 * 8 7 5 35 35 H 1.07996 * 120.00139 * 0.02562 * 14 13 2 36 36 H 1.08000 * 119.99945 * 179.97438 * 15 14 13 37 37 H 1.09008 * 109.47270 * 329.99929 * 17 16 15 38 38 H 1.08996 * 109.47013 * 209.99695 * 17 16 15 39 39 H 0.97006 * 119.99559 * 359.97438 * 18 17 16 40 40 H 1.08003 * 120.84178 * 0.02562 * 22 21 19 41 41 H 1.07997 * 120.36063 * 179.72967 * 23 22 21 42 42 H 1.08000 * 119.69912 * 179.97438 * 27 26 24 43 43 H 1.07998 * 119.99927 * 179.72948 * 28 16 15 44 44 H 1.08001 * 119.99935 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6125 -0.6618 3.5089 8 7 2.9255 -1.9389 3.4497 9 14 2.7904 0.2698 5.1182 10 1 2.3756 1.6820 4.9211 11 1 1.9302 -0.3596 6.1522 12 1 4.2073 0.2278 5.5605 13 6 2.0324 -0.7104 -1.2305 14 6 2.4586 0.0195 -2.3243 15 6 2.9190 -0.6321 -3.4533 16 6 2.9525 -2.0137 -3.4885 17 6 3.4537 -2.7240 -4.7194 18 7 4.8989 -2.9361 -4.6064 19 6 5.5683 -3.5580 -5.5972 20 8 4.9729 -3.9425 -6.5849 21 6 7.0257 -3.7713 -5.4834 22 6 7.7328 -4.4162 -6.5073 23 6 9.0944 -4.5922 -6.3533 24 6 9.7123 -4.1296 -5.2002 25 9 11.0435 -4.2999 -5.0450 26 7 9.0188 -3.5250 -4.2516 27 6 7.7197 -3.3353 -4.3545 28 6 2.5209 -2.7436 -2.3968 29 6 2.0663 -2.0918 -1.2657 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6319 1.1525 34 1 3.2496 -2.3960 4.2416 35 1 2.4321 1.0988 -2.2969 36 1 3.2516 -0.0619 -4.3080 37 1 3.2434 -2.1172 -5.6002 38 1 2.9515 -3.6868 -4.8131 39 1 5.3740 -2.6290 -3.8184 40 1 7.2261 -4.7667 -7.3943 41 1 9.6708 -5.0887 -7.1198 42 1 7.1869 -2.8373 -3.5579 43 1 2.5430 -3.8229 -2.4260 44 1 1.7331 -2.6621 -0.4111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484561510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:54 Heat of formation + Delta-G solvation = -4.245962 kcal Electronic energy + Delta-G solvation = -27681.487959 eV Core-core repulsion = 23513.619712 eV Total energy + Delta-G solvation = -4167.868247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.53749 -41.04108 -39.68522 -38.99658 -36.09304 -34.73896 -33.26698 -32.57894 -31.77526 -30.77553 -30.15922 -28.37807 -26.36801 -24.78246 -24.27637 -23.80173 -22.64592 -21.73259 -21.17375 -19.79751 -18.85914 -18.23868 -17.88241 -17.45717 -16.60406 -16.14356 -15.85585 -15.72427 -15.39246 -15.03917 -14.93246 -14.53158 -14.36518 -14.05641 -13.65924 -13.64424 -13.53604 -13.41164 -13.37444 -13.15889 -12.96158 -12.57537 -12.30091 -12.00952 -11.71517 -11.20958 -10.96648 -10.88553 -10.71525 -10.66813 -10.64978 -10.31775 -10.12771 -10.01486 -9.72699 -9.67846 -9.36392 -9.02466 -8.71068 -8.40074 -7.04075 -5.82798 -3.11652 -0.05116 0.50818 1.37656 1.61968 2.32983 2.84453 2.95006 3.19843 3.39894 3.45724 3.47842 3.84467 3.98771 4.13427 4.19669 4.38046 4.54612 4.61889 4.74197 4.90667 4.97742 5.14220 5.23648 5.26852 5.32810 5.37646 5.51395 5.52727 5.66440 5.72472 5.89933 5.90946 5.96939 6.02953 6.18886 6.25672 6.29921 6.45231 6.56668 6.65178 6.70786 6.90431 6.97479 7.10534 7.10983 7.21160 7.65453 7.77426 8.35445 9.47104 10.02081 10.37265 11.39824 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.002208 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.231879 B =12680.640857 C =14687.185181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C -0.051 4.051 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.135 4.135 17 C 0.168 3.832 18 N -0.716 5.716 19 C 0.566 3.434 20 O -0.535 6.535 21 C -0.199 4.199 22 C 0.012 3.988 23 C -0.201 4.201 24 C 0.330 3.670 25 F -0.106 7.106 26 N -0.513 5.513 27 C 0.177 3.823 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.404 0.596 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.173 0.827 43 H 0.119 0.881 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.125 -3.710 -22.164 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.046 3.954 18 N -0.368 5.368 19 C 0.352 3.648 20 O -0.413 6.413 21 C -0.205 4.205 22 C -0.014 4.014 23 C -0.222 4.222 24 C 0.177 3.823 25 F -0.085 7.085 26 N -0.227 5.227 27 C 0.018 3.982 28 C -0.116 4.116 29 C -0.124 4.124 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.240 0.760 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.190 0.810 43 H 0.137 0.863 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.191 -3.581 -21.978 23.400 hybrid contribution 0.339 -0.015 0.823 0.890 sum 7.530 -3.596 -21.155 22.741 Atomic orbital electron populations 1.22423 0.98203 1.01183 1.00191 1.19263 0.92180 0.95024 0.84204 0.92587 1.42526 1.78216 1.10702 1.04922 1.19280 1.36639 0.94034 0.87112 0.91012 1.24740 1.01984 0.96006 0.98110 1.69663 1.50740 1.08670 1.28900 0.86122 0.77347 0.78807 0.83932 1.20529 1.21847 1.21841 1.20554 0.94997 0.94067 0.95607 1.21028 0.99985 0.99859 0.93121 1.20932 0.99548 0.93453 0.98049 1.19619 1.04428 0.93865 0.95621 1.20199 0.79022 1.00325 0.95864 1.46092 1.09609 1.59373 1.21699 1.17845 0.85849 0.78052 0.83093 1.90803 1.69211 1.50662 1.30594 1.21059 0.95402 1.06048 0.97982 1.21641 0.92228 0.89952 0.97605 1.21866 0.96026 1.05367 0.98904 1.18457 0.79275 0.93689 0.90839 1.91666 1.28958 1.92276 1.95594 1.67055 1.09477 1.16210 1.29985 1.22828 0.87737 0.92244 0.95346 1.21026 0.98302 0.99517 0.92800 1.21099 0.99105 0.94440 0.97749 0.93304 0.92354 0.94305 0.78005 0.93491 0.86071 0.86418 0.90498 0.90432 0.76042 0.82226 0.82544 0.81012 0.86257 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.47 37.16 0.35 -2.42 16 2 C 0.20 3.86 3.09 -69.08 -0.21 3.65 16 3 H 0.06 1.08 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.30 5.07 -54.55 -0.28 -17.57 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 9 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 C -0.05 -0.83 4.95 -104.62 -0.52 -1.35 16 14 C -0.12 -1.65 9.67 -39.58 -0.38 -2.03 16 15 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 16 C -0.13 -1.51 5.25 -104.62 -0.55 -2.06 16 17 C 0.17 1.63 5.80 -5.19 -0.03 1.60 16 18 N -0.72 -6.40 5.50 -62.46 -0.34 -6.75 16 19 C 0.57 5.68 7.78 -12.38 -0.10 5.58 16 20 O -0.53 -6.95 16.42 5.30 0.09 -6.86 16 21 C -0.20 -1.69 5.89 -104.83 -0.62 -2.31 16 22 C 0.01 0.08 9.71 -38.89 -0.38 -0.29 16 23 C -0.20 -1.31 10.07 -39.42 -0.40 -1.71 16 24 C 0.33 3.00 8.41 -17.22 -0.14 2.86 16 25 F -0.11 -1.01 17.29 2.25 0.04 -0.97 16 26 N -0.51 -5.31 10.36 -13.22 -0.14 -5.45 16 27 C 0.18 1.50 10.71 -17.14 -0.18 1.31 16 28 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 29 C -0.11 -1.66 9.06 -39.58 -0.36 -2.01 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.38 9.71 6.07 -40.82 -0.25 9.46 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.08 0.73 8.09 -51.92 -0.42 0.31 16 38 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.40 3.07 6.52 -40.82 -0.27 2.81 16 40 H 0.16 0.96 7.73 -52.48 -0.41 0.55 16 41 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.17 1.10 6.42 -52.49 -0.34 0.76 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.13 2.20 6.92 -52.49 -0.36 1.84 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -32.32 383.79 -9.05 -41.37 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.38 Total: 9.59 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -4.53 Total: -9.39 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.03 Total: -56.43 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.09 Total: -6.86 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.32 -9.05 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484561510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.127 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds