Wall clock time and date at job start Wed Apr 1 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46717 * 2 1 4 4 N 1.46498 * 109.47320 * 239.99817 * 2 1 3 5 5 C 1.36933 * 120.00021 * 84.99470 * 4 2 1 6 6 H 1.08002 * 120.00104 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99704 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47101 * 60.00588 * 9 7 5 11 11 H 1.48504 * 109.46775 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47505 * 300.00113 * 9 7 5 13 13 C 1.50697 * 109.46961 * 119.99551 * 2 1 3 14 14 C 1.38234 * 120.00029 * 259.99644 * 13 2 1 15 15 C 1.38243 * 120.00122 * 180.02562 * 14 13 2 16 16 C 1.38237 * 119.99528 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99618 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47230 * 89.99736 * 17 16 15 19 19 C 1.34771 * 120.00110 * 179.97438 * 18 17 16 20 20 O 1.21570 * 119.99921 * 0.02562 * 19 18 17 21 21 C 1.47733 * 119.99951 * 179.97438 * 19 18 17 22 22 C 1.40150 * 120.52716 * 180.02562 * 21 19 18 23 23 C 1.38155 * 118.32278 * 180.02562 * 22 21 19 24 24 C 1.38758 * 119.28024 * 0.02562 * 23 22 21 25 25 F 1.35099 * 119.48760 * 179.97438 * 24 23 22 26 26 N 1.32146 * 121.01869 * 359.97438 * 24 23 22 27 27 C 1.31693 * 121.83785 * 0.03860 * 26 24 23 28 28 C 1.38234 * 120.00260 * 0.24660 * 16 15 14 29 29 C 1.38232 * 119.99688 * 359.48061 * 28 16 15 30 30 H 1.09002 * 109.47134 * 300.00168 * 1 2 3 31 31 H 1.08996 * 109.47173 * 60.00566 * 1 2 3 32 32 H 1.09009 * 109.46717 * 180.02562 * 1 2 3 33 33 H 0.96994 * 119.99962 * 265.00086 * 4 2 1 34 34 H 0.97001 * 119.99774 * 179.97438 * 8 7 5 35 35 H 1.07996 * 120.00139 * 359.97438 * 14 13 2 36 36 H 1.08000 * 119.99945 * 179.97438 * 15 14 13 37 37 H 1.09008 * 109.47270 * 329.99929 * 17 16 15 38 38 H 1.08996 * 109.47013 * 209.99695 * 17 16 15 39 39 H 0.97006 * 119.99559 * 359.97438 * 18 17 16 40 40 H 1.08003 * 120.84178 * 0.02562 * 22 21 19 41 41 H 1.07997 * 120.36063 * 179.72967 * 23 22 21 42 42 H 1.08000 * 119.69912 * 179.97438 * 27 26 24 43 43 H 1.07998 * 119.99927 * 179.72948 * 28 16 15 44 44 H 1.08005 * 120.00025 * 180.27685 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8925 1.0404 -2.4242 7 6 2.6124 -0.6618 -3.5090 8 7 2.9255 -1.9388 -3.4497 9 14 2.7913 0.2702 -5.1179 10 1 3.7465 1.3926 -4.9361 11 1 3.3003 -0.6484 -6.1680 12 1 1.4691 0.8069 -5.5288 13 6 2.0323 -0.7103 1.2305 14 6 2.4588 0.0196 2.3242 15 6 2.9200 -0.6320 3.4529 16 6 2.9553 -2.0135 3.4874 17 6 3.4587 -2.7238 4.7175 18 7 2.3396 -2.9738 5.6294 19 6 2.5535 -3.6023 6.8022 20 8 3.6752 -3.9614 7.1037 21 6 1.4251 -3.8539 7.7219 22 6 1.6351 -4.5061 8.9446 23 6 0.5474 -4.7184 9.7695 24 6 -0.7065 -4.2835 9.3645 25 9 -1.7732 -4.4893 10.1677 26 7 -0.8735 -3.6712 8.2055 27 6 0.1334 -3.4474 7.3867 28 6 2.5341 -2.7433 2.3915 29 6 2.0676 -2.0918 1.2652 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 2.2491 -1.6317 -1.1525 34 1 3.2489 -2.3961 -4.2417 35 1 2.4323 1.0989 2.2968 36 1 3.2536 -0.0617 4.3072 37 1 4.2025 -2.1028 5.2169 38 1 3.9116 -3.6724 4.4295 39 1 1.4447 -2.6869 5.3889 40 1 2.6223 -4.8345 9.2346 41 1 0.6709 -5.2215 10.7171 42 1 -0.0424 -2.9441 6.4474 43 1 2.5658 -3.8225 2.4169 44 1 1.7344 -2.6620 0.4106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484561511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:57 Heat of formation + Delta-G solvation = -3.989482 kcal Electronic energy + Delta-G solvation = -27552.577061 eV Core-core repulsion = 23384.719936 eV Total energy + Delta-G solvation = -4167.857125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.61028 -41.10023 -39.70826 -39.02230 -36.10307 -34.75948 -33.33405 -32.59375 -31.81506 -30.77460 -30.17229 -28.37837 -26.38764 -24.84409 -24.32081 -23.80835 -22.64581 -21.73619 -21.22432 -19.79843 -18.92270 -18.29510 -17.94235 -17.45527 -16.67606 -16.15426 -15.88118 -15.75069 -15.45006 -15.05895 -14.95088 -14.57140 -14.36728 -14.11335 -13.72753 -13.69788 -13.49312 -13.44249 -13.38712 -13.14655 -13.04991 -12.58111 -12.34724 -11.98437 -11.60006 -11.28961 -10.96756 -10.85975 -10.76462 -10.71559 -10.65420 -10.35303 -10.18722 -10.05053 -9.73828 -9.71346 -9.40207 -9.00980 -8.70834 -8.39843 -7.03730 -5.81871 -3.10837 -0.11721 0.43800 1.37479 1.62120 2.27797 2.80102 2.87424 3.13744 3.41096 3.45669 3.46527 3.77376 3.97333 4.07588 4.12947 4.33137 4.55120 4.60655 4.67792 4.90281 4.91032 5.14864 5.21427 5.24040 5.31831 5.33856 5.52088 5.52707 5.66784 5.72476 5.84098 5.90194 5.96934 5.99590 6.19017 6.25678 6.29952 6.45199 6.56694 6.65206 6.70712 6.89126 6.90560 7.06905 7.10824 7.21254 7.64876 7.73859 8.36371 9.47730 10.02852 10.37964 11.40626 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.001778 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.491421 B =15745.077504 C =16322.867760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.051 4.051 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.135 4.135 17 C 0.167 3.833 18 N -0.716 5.716 19 C 0.564 3.436 20 O -0.533 6.533 21 C -0.198 4.198 22 C 0.012 3.988 23 C -0.199 4.199 24 C 0.330 3.670 25 F -0.106 7.106 26 N -0.515 5.515 27 C 0.175 3.825 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.402 0.598 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.119 0.881 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -3.945 26.706 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.045 3.955 18 N -0.367 5.367 19 C 0.350 3.650 20 O -0.410 6.410 21 C -0.203 4.203 22 C -0.014 4.014 23 C -0.221 4.221 24 C 0.177 3.823 25 F -0.085 7.085 26 N -0.229 5.229 27 C 0.017 3.983 28 C -0.116 4.116 29 C -0.124 4.124 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.238 0.762 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.189 0.811 43 H 0.137 0.863 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.288 -3.835 26.553 27.169 hybrid contribution 0.258 0.011 -0.773 0.815 sum -4.030 -3.825 25.780 26.372 Atomic orbital electron populations 1.22425 0.98212 1.01155 1.00181 1.19260 0.92178 0.95028 0.84211 0.92602 1.42509 1.78232 1.10699 1.04892 1.19191 1.36903 0.93991 0.87145 0.91112 1.24746 1.01935 0.96016 0.98130 1.69644 1.50589 1.08669 1.29096 0.86255 0.77799 0.78613 0.83429 1.21240 1.21678 1.21237 1.20555 0.95008 0.94066 0.95581 1.21028 0.99981 0.99857 0.93139 1.20933 0.99511 0.93460 0.98070 1.19611 1.04604 0.93858 0.95440 1.20216 0.87918 1.00273 0.87074 1.46083 1.12591 1.59343 1.18717 1.17850 0.87820 0.78113 0.81209 1.90815 1.23605 1.51453 1.75147 1.21071 0.95377 1.05894 0.97995 1.21660 0.99906 0.89723 0.90122 1.21876 0.91252 1.05360 1.03567 1.18444 0.83110 0.93675 0.87096 1.91666 1.55245 1.91736 1.69855 1.67039 1.36356 1.15741 1.03735 1.22791 0.86084 0.92450 0.96992 1.21025 0.98127 0.99520 0.92950 1.21102 0.99079 0.94445 0.97785 0.94323 0.92363 0.93315 0.77992 0.93385 0.86073 0.86420 0.90427 0.90335 0.76231 0.82178 0.82511 0.81089 0.86254 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.47 37.16 0.35 -2.39 16 2 C 0.20 3.87 3.09 -69.08 -0.21 3.65 16 3 H 0.06 1.08 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.41 5.07 -54.55 -0.28 -17.68 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 9 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.05 -0.83 4.95 -104.63 -0.52 -1.35 16 14 C -0.12 -1.65 9.67 -39.58 -0.38 -2.04 16 15 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 16 C -0.13 -1.51 5.25 -104.62 -0.55 -2.06 16 17 C 0.17 1.62 5.80 -5.19 -0.03 1.59 16 18 N -0.72 -5.88 5.50 -62.46 -0.34 -6.22 16 19 C 0.56 5.32 7.78 -12.38 -0.10 5.23 16 20 O -0.53 -6.78 16.42 5.30 0.09 -6.70 16 21 C -0.20 -1.50 5.89 -104.83 -0.62 -2.12 16 22 C 0.01 0.08 9.71 -38.89 -0.38 -0.30 16 23 C -0.20 -1.15 10.07 -39.42 -0.40 -1.54 16 24 C 0.33 2.66 8.41 -17.22 -0.14 2.51 16 25 F -0.11 -0.90 17.29 2.25 0.04 -0.86 16 26 N -0.51 -4.65 10.36 -13.22 -0.14 -4.78 16 27 C 0.18 1.25 10.71 -17.14 -0.18 1.07 16 28 C -0.10 -1.25 9.70 -39.59 -0.38 -1.64 16 29 C -0.11 -1.66 9.05 -39.59 -0.36 -2.02 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.38 9.79 6.06 -40.82 -0.25 9.54 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.12 1.48 8.04 -52.49 -0.42 1.05 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.08 0.76 8.09 -51.92 -0.42 0.34 16 38 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.40 2.54 6.52 -40.82 -0.27 2.27 16 40 H 0.16 0.88 7.73 -52.48 -0.41 0.47 16 41 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.17 0.80 6.42 -52.49 -0.34 0.46 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.13 2.20 6.92 -52.48 -0.36 1.84 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -32.52 383.79 -9.05 -41.58 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.38 Total: 8.78 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.53 Total: -10.05 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.03 Total: -55.51 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: 0.09 Total: -6.70 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.04 Total: -0.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.52 -9.05 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484561511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.588 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds