Wall clock time and date at job start Wed Apr 1 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46717 * 2 1 4 4 N 1.46498 * 109.47320 * 239.99817 * 2 1 3 5 5 C 1.36933 * 120.00021 * 84.99470 * 4 2 1 6 6 H 1.08002 * 120.00104 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99704 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47101 * 60.00588 * 9 7 5 11 11 H 1.48504 * 109.46775 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47505 * 300.00113 * 9 7 5 13 13 C 1.50697 * 109.46961 * 119.99551 * 2 1 3 14 14 C 1.38234 * 120.00029 * 259.99644 * 13 2 1 15 15 C 1.38243 * 120.00122 * 180.02562 * 14 13 2 16 16 C 1.38237 * 119.99528 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99618 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47230 * 89.99736 * 17 16 15 19 19 C 1.34771 * 120.00110 * 179.97438 * 18 17 16 20 20 O 1.21570 * 119.99921 * 0.02562 * 19 18 17 21 21 C 1.47733 * 119.99951 * 179.97438 * 19 18 17 22 22 C 1.40150 * 120.52716 * 180.02562 * 21 19 18 23 23 C 1.38155 * 118.32278 * 180.02562 * 22 21 19 24 24 C 1.38758 * 119.28024 * 0.02562 * 23 22 21 25 25 F 1.35099 * 119.48760 * 179.97438 * 24 23 22 26 26 N 1.32146 * 121.01869 * 359.97438 * 24 23 22 27 27 C 1.31693 * 121.83785 * 0.03860 * 26 24 23 28 28 C 1.38234 * 120.00260 * 0.24660 * 16 15 14 29 29 C 1.38232 * 119.99688 * 359.48061 * 28 16 15 30 30 H 1.09002 * 109.47134 * 300.00168 * 1 2 3 31 31 H 1.08996 * 109.47173 * 60.00566 * 1 2 3 32 32 H 1.09009 * 109.46717 * 180.02562 * 1 2 3 33 33 H 0.96994 * 119.99962 * 265.00086 * 4 2 1 34 34 H 0.97001 * 119.99774 * 179.97438 * 8 7 5 35 35 H 1.07996 * 120.00139 * 359.97438 * 14 13 2 36 36 H 1.08000 * 119.99945 * 179.97438 * 15 14 13 37 37 H 1.09008 * 109.47270 * 329.99929 * 17 16 15 38 38 H 1.08996 * 109.47013 * 209.99695 * 17 16 15 39 39 H 0.97006 * 119.99559 * 359.97438 * 18 17 16 40 40 H 1.08003 * 120.84178 * 0.02562 * 22 21 19 41 41 H 1.07997 * 120.36063 * 179.72967 * 23 22 21 42 42 H 1.08000 * 119.69912 * 179.97438 * 27 26 24 43 43 H 1.07998 * 119.99927 * 179.72948 * 28 16 15 44 44 H 1.08005 * 120.00025 * 180.27685 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8925 1.0404 -2.4242 7 6 2.6124 -0.6618 -3.5090 8 7 2.9255 -1.9388 -3.4497 9 14 2.7913 0.2702 -5.1179 10 1 3.7465 1.3926 -4.9361 11 1 3.3003 -0.6484 -6.1680 12 1 1.4691 0.8069 -5.5288 13 6 2.0323 -0.7103 1.2305 14 6 2.4588 0.0196 2.3242 15 6 2.9200 -0.6320 3.4529 16 6 2.9553 -2.0135 3.4874 17 6 3.4587 -2.7238 4.7175 18 7 2.3396 -2.9738 5.6294 19 6 2.5535 -3.6023 6.8022 20 8 3.6752 -3.9614 7.1037 21 6 1.4251 -3.8539 7.7219 22 6 1.6351 -4.5061 8.9446 23 6 0.5474 -4.7184 9.7695 24 6 -0.7065 -4.2835 9.3645 25 9 -1.7732 -4.4893 10.1677 26 7 -0.8735 -3.6712 8.2055 27 6 0.1334 -3.4474 7.3867 28 6 2.5341 -2.7433 2.3915 29 6 2.0676 -2.0918 1.2652 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 2.2491 -1.6317 -1.1525 34 1 3.2489 -2.3961 -4.2417 35 1 2.4323 1.0989 2.2968 36 1 3.2536 -0.0617 4.3072 37 1 4.2025 -2.1028 5.2169 38 1 3.9116 -3.6724 4.4295 39 1 1.4447 -2.6869 5.3889 40 1 2.6223 -4.8345 9.2346 41 1 0.6709 -5.2215 10.7171 42 1 -0.0424 -2.9441 6.4474 43 1 2.5658 -3.8225 2.4169 44 1 1.7344 -2.6620 0.4106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484561511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:56 Heat of formation + Delta-G solvation = -24.272020 kcal Electronic energy + Delta-G solvation = -27553.456578 eV Core-core repulsion = 23384.719936 eV Total energy + Delta-G solvation = -4168.736642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.20536 -41.72857 -40.65004 -39.88473 -37.43801 -35.87442 -34.17606 -33.88961 -32.70712 -31.84708 -31.37024 -29.97236 -27.34376 -25.92897 -25.36909 -24.80465 -23.75650 -22.93266 -21.92688 -21.08995 -19.53884 -19.37035 -18.93124 -18.52706 -17.28175 -17.25194 -16.85528 -16.72114 -16.40795 -16.09308 -15.89393 -15.77923 -15.33707 -15.04633 -14.96954 -14.67670 -14.48086 -14.31334 -14.23626 -14.14856 -14.04408 -13.80999 -13.50590 -13.41743 -12.96090 -12.75019 -12.70390 -12.45982 -12.19473 -11.99799 -11.58698 -11.55750 -11.44281 -11.24992 -10.98757 -10.82037 -10.37064 -10.07666 -9.76175 -9.53201 -9.01540 -7.93561 -5.21713 -0.68988 -0.05478 0.32345 0.56129 1.47659 1.50248 1.56164 1.61456 2.06148 2.34278 2.55197 2.56666 2.92880 3.27424 3.40769 3.52873 3.63767 3.67502 3.81695 3.89957 4.01688 4.06162 4.14964 4.19094 4.38342 4.46642 4.56383 4.62397 4.68854 4.74827 4.79037 4.82914 4.87596 5.02838 5.09402 5.14567 5.24699 5.24978 5.35261 5.44115 5.50962 5.58419 5.65468 5.86926 6.12581 6.28787 6.34191 6.40913 7.04442 7.34941 8.10319 8.33886 9.29732 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.001778 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.491421 B =15745.077504 C =16322.867760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.198 3.802 3 H 0.053 0.947 4 N -0.735 5.735 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.278 1.278 13 C -0.073 4.073 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.117 4.117 17 C 0.173 3.827 18 N -0.706 5.706 19 C 0.569 3.431 20 O -0.568 6.568 21 C -0.203 4.203 22 C 0.012 3.988 23 C -0.184 4.184 24 C 0.314 3.686 25 F -0.113 7.113 26 N -0.542 5.542 27 C 0.178 3.822 28 C -0.097 4.097 29 C -0.125 4.125 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.413 0.587 40 H 0.171 0.829 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.133 0.867 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -3.058 28.997 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.090 3.910 3 H 0.071 0.929 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.204 1.204 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.109 4.109 16 C -0.117 4.117 17 C 0.050 3.950 18 N -0.358 5.358 19 C 0.356 3.644 20 O -0.448 6.448 21 C -0.209 4.209 22 C -0.014 4.014 23 C -0.205 4.205 24 C 0.161 3.839 25 F -0.092 7.092 26 N -0.257 5.257 27 C 0.020 3.980 28 C -0.115 4.115 29 C -0.143 4.143 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.250 0.750 40 H 0.189 0.811 41 H 0.204 0.796 42 H 0.209 0.791 43 H 0.151 0.849 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.246 -2.900 28.878 29.332 hybrid contribution 0.203 -0.263 -1.322 1.363 sum -4.043 -3.163 27.556 28.030 Atomic orbital electron populations 1.22255 0.96757 1.00909 1.00900 1.19433 0.93076 0.94681 0.83839 0.92852 1.42719 1.78507 1.10449 1.05934 1.19597 1.34938 0.94299 0.88238 0.90526 1.25537 1.03014 0.96920 1.01432 1.69807 1.52596 1.10192 1.29437 0.85236 0.77940 0.77301 0.79436 1.20457 1.22391 1.20428 1.20321 0.97356 0.94249 0.95517 1.21196 0.99440 1.00632 0.92804 1.21240 0.97922 0.93612 0.98148 1.19731 1.02786 0.93926 0.95276 1.20116 0.88317 1.00070 0.86507 1.45935 1.12823 1.58866 1.18162 1.18013 0.87670 0.77397 0.81307 1.90804 1.25023 1.53030 1.75929 1.20979 0.94884 1.06772 0.98223 1.21867 1.00588 0.89167 0.89772 1.22089 0.89838 1.04228 1.04307 1.18733 0.83724 0.94278 0.87129 1.91646 1.55714 1.91854 1.70007 1.67019 1.37313 1.16757 1.04566 1.23051 0.85512 0.92109 0.97375 1.21143 0.97596 1.00362 0.92448 1.20971 1.00789 0.94415 0.98165 0.91035 0.94053 0.94039 0.79230 0.94122 0.84557 0.83289 0.89742 0.90654 0.74951 0.81143 0.79641 0.79107 0.84904 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.47 71.98 0.68 -4.39 16 2 C 0.20 7.56 3.09 44.25 0.14 7.70 16 3 H 0.05 2.04 7.94 -2.39 -0.02 2.02 16 4 N -0.73 -36.43 5.07 -326.50 -1.66 -38.09 16 5 C -0.24 -13.09 9.93 84.03 0.83 -12.25 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.08 13.06 21.65 0.28 -58.79 16 9 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C -0.07 -2.35 4.95 -19.87 -0.10 -2.45 16 14 C -0.12 -3.06 9.67 22.27 0.22 -2.84 16 15 C -0.09 -1.80 9.70 22.27 0.22 -1.58 16 16 C -0.12 -2.32 5.25 -19.86 -0.10 -2.42 16 17 C 0.17 2.87 5.80 85.63 0.50 3.36 16 18 N -0.71 -9.74 5.50 -469.81 -2.58 -12.32 16 19 C 0.57 9.55 7.78 86.75 0.67 10.22 16 20 O -0.57 -13.50 16.42 -3.94 -0.06 -13.56 16 21 C -0.20 -2.68 5.89 -20.00 -0.12 -2.80 16 22 C 0.01 0.13 9.71 22.71 0.22 0.35 16 23 C -0.18 -1.70 10.07 22.37 0.23 -1.48 16 24 C 0.31 4.61 8.41 84.77 0.71 5.32 16 25 F -0.11 -1.81 17.29 44.97 0.78 -1.04 16 26 N -0.54 -9.06 10.36 -195.73 -2.03 -11.09 16 27 C 0.18 2.21 10.71 85.02 0.91 3.12 16 28 C -0.10 -2.38 9.70 22.27 0.22 -2.16 16 29 C -0.12 -3.96 9.05 22.27 0.20 -3.76 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.37 19.91 6.06 -92.71 -0.56 19.34 16 34 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.14 2.94 8.04 -2.91 -0.02 2.92 16 36 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 38 H 0.08 1.36 8.08 -2.39 -0.02 1.35 16 39 H 0.41 3.99 6.52 -92.70 -0.60 3.39 16 40 H 0.17 1.49 7.73 -2.91 -0.02 1.47 16 41 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 42 H 0.19 1.33 6.42 -2.91 -0.02 1.31 16 43 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.10 3.73 6.92 -2.91 -0.02 3.71 16 Total: -1.00 -71.72 383.79 2.53 -69.19 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.11 Total: 27.76 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.89 Total: -9.98 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.98 Total: -120.29 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.06 Total: -13.56 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.72 2.53 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484561511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.915 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds