Wall clock time and date at job start Wed Apr 1 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30011 * 127.33577 * 2 1 4 4 O 1.20663 * 112.30031 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15921 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.83001 * 179.97438 * 5 4 3 7 7 F 1.39902 * 109.47108 * 29.97685 * 6 5 4 8 8 F 1.39902 * 109.47429 * 149.97545 * 6 5 4 9 9 C 1.37360 * 106.34136 * 359.97438 * 5 4 3 10 10 C 1.47397 * 128.56728 * 179.97438 * 9 5 4 11 11 O 1.21616 * 120.00138 * 89.99625 * 10 9 5 12 12 N 1.34780 * 119.99994 * 269.99734 * 10 9 5 13 13 C 1.47419 * 125.64564 * 359.69321 * 12 10 9 14 14 C 1.55130 * 104.72445 * 155.81653 * 13 12 10 15 15 H 1.08998 * 110.94250 * 155.28503 * 14 13 12 16 16 C 1.52997 * 111.18900 * 279.19098 * 14 13 12 17 17 C 1.55164 * 101.48309 * 37.29063 * 14 13 12 18 18 H 1.09000 * 110.71522 * 82.69946 * 17 14 13 19 19 C 1.52997 * 110.71650 * 205.97011 * 17 14 13 20 20 N 1.46504 * 109.46651 * 179.97438 * 19 17 14 21 21 C 1.36940 * 119.99825 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00190 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99975 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99981 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47295 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47154 * 119.99765 * 25 23 21 28 28 H 1.48499 * 109.47395 * 239.99528 * 25 23 21 29 29 C 1.47016 * 125.64865 * 179.97438 * 12 10 9 30 30 H 1.09004 * 109.46865 * 90.02746 * 1 2 3 31 31 H 1.08999 * 109.47027 * 210.02443 * 1 2 3 32 32 H 1.08993 * 109.47507 * 330.02857 * 1 2 3 33 33 H 1.08998 * 109.47594 * 269.97604 * 6 5 4 34 34 H 1.09003 * 110.36375 * 274.74592 * 13 12 10 35 35 H 1.08996 * 110.37072 * 37.06429 * 13 12 10 36 36 H 1.09004 * 109.46923 * 172.18326 * 16 14 13 37 37 H 1.09001 * 109.46910 * 292.17821 * 16 14 13 38 38 H 1.08999 * 109.47263 * 52.18796 * 16 14 13 39 39 H 1.09001 * 109.47428 * 299.97661 * 19 17 14 40 40 H 1.08995 * 109.47084 * 59.98283 * 19 17 14 41 41 H 0.96998 * 120.00186 * 0.02562 * 20 19 17 42 42 H 0.97005 * 120.00211 * 180.02562 * 24 23 21 43 43 H 1.09004 * 109.88689 * 300.44111 * 29 12 10 44 44 H 1.09002 * 109.88349 * 61.60843 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6495 -0.6008 0.0004 6 6 4.9712 -1.3246 0.0003 7 9 5.9290 -0.5465 0.6595 8 9 4.8317 -2.5503 0.6602 9 6 2.3992 -1.1697 0.0003 10 6 2.0401 -2.5992 -0.0004 11 8 1.8921 -3.1896 1.0526 12 7 1.8756 -3.2522 -1.1679 13 6 2.0173 -2.6604 -2.5106 14 6 2.3522 -3.8591 -3.4366 15 1 2.0605 -3.6498 -4.4657 16 6 3.8355 -4.2245 -3.3535 17 6 1.4686 -4.9783 -2.8247 18 1 0.4469 -4.9104 -3.1982 19 6 2.0629 -6.3575 -3.1171 20 7 1.2090 -7.3919 -2.5277 21 6 1.5431 -8.7132 -2.6608 22 1 2.4362 -8.9928 -3.1998 23 6 0.7338 -9.6934 -2.1028 24 7 -0.3543 -9.3527 -1.4454 25 14 1.1892 -11.4958 -2.2849 26 1 2.4491 -11.6120 -3.0624 27 1 1.3796 -12.0967 -0.9402 28 1 0.1006 -12.2119 -2.9973 29 6 1.5197 -4.6712 -1.3133 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5133 33 1 5.2897 -1.4994 -1.0273 34 1 1.0834 -2.1898 -2.8182 35 1 2.8303 -1.9345 -2.5215 36 1 4.0132 -5.1493 -3.9025 37 1 4.4321 -3.4230 -3.7894 38 1 4.1181 -4.3615 -2.3098 39 1 2.1225 -6.5064 -4.1952 40 1 3.0617 -6.4217 -2.6855 41 1 0.4071 -7.1408 -2.0432 42 1 -0.9197 -10.0376 -1.0551 43 1 2.2748 -5.2940 -0.8336 44 1 0.5438 -4.8565 -0.8644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501123340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:54 Heat of formation + Delta-G solvation = -77.716286 kcal Electronic energy + Delta-G solvation = -31175.567148 eV Core-core repulsion = 26573.743764 eV Total energy + Delta-G solvation = -4601.823384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.33168 -48.36812 -46.24855 -41.40315 -39.30096 -36.47213 -35.89241 -34.48252 -33.97419 -32.79886 -30.66376 -29.93847 -28.49839 -27.72438 -27.17347 -25.68249 -24.52144 -23.00479 -21.98180 -20.93291 -20.51519 -19.60738 -19.33954 -18.90337 -18.41576 -18.37731 -18.20459 -17.46719 -17.06950 -16.68118 -16.45659 -15.66165 -15.33978 -15.29189 -15.17284 -14.75867 -14.74449 -14.64416 -14.39736 -14.38024 -14.21210 -13.92108 -13.86632 -13.73648 -13.35778 -13.10821 -12.98173 -12.82108 -12.77255 -12.70777 -12.59256 -12.11390 -11.89148 -11.69636 -11.59946 -11.50866 -11.38941 -11.16488 -11.02894 -10.91809 -9.85818 -8.96996 -7.93766 -5.21958 -0.30250 0.56643 1.00626 1.14006 1.47897 1.48934 1.58540 1.72134 2.44120 2.56945 2.77176 2.83846 3.14389 3.35210 3.39270 3.42396 3.49104 3.62609 3.75944 3.81224 3.87026 4.16398 4.21769 4.26339 4.34310 4.50703 4.51950 4.54122 4.58454 4.66847 4.81124 4.82626 4.95259 4.98202 5.04049 5.05564 5.20826 5.26121 5.34704 5.52366 5.53604 6.25204 6.28829 6.78859 6.79664 7.35212 8.12218 8.32935 9.30017 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.002836 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.279737 B = 9869.841560 C =10240.676159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.061 3.939 3 N -0.349 5.349 4 O 0.128 5.872 5 C -0.064 4.064 6 C 0.359 3.641 7 F -0.186 7.186 8 F -0.193 7.193 9 C -0.205 4.205 10 C 0.605 3.395 11 O -0.565 6.565 12 N -0.595 5.595 13 C 0.099 3.901 14 C -0.084 4.084 15 H 0.125 0.875 16 C -0.147 4.147 17 C -0.092 4.092 18 H 0.089 0.911 19 C 0.163 3.837 20 N -0.748 5.748 21 C -0.240 4.240 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.298 1.298 28 H -0.293 1.293 29 C 0.125 3.875 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.203 0.797 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.026 0.974 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.048 0.952 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.899 24.710 -5.547 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 N -0.052 5.052 4 O 0.063 5.937 5 C -0.129 4.129 6 C 0.304 3.696 7 F -0.167 7.167 8 F -0.174 7.174 9 C -0.212 4.212 10 C 0.392 3.608 11 O -0.444 6.444 12 N -0.327 5.327 13 C -0.022 4.022 14 C -0.103 4.103 15 H 0.143 0.857 16 C -0.204 4.204 17 C -0.111 4.111 18 H 0.108 0.892 19 C 0.037 3.963 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.800 3.200 26 H -0.188 1.188 27 H -0.225 1.225 28 H -0.220 1.220 29 C 0.003 3.997 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.219 0.781 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.780 25.609 -4.971 27.525 hybrid contribution -0.549 -2.185 1.027 2.476 sum 8.231 23.424 -3.944 25.139 Atomic orbital electron populations 1.20443 0.82767 1.04945 1.05752 1.25203 0.99955 0.84968 0.99930 1.73635 0.89107 1.23109 1.19397 1.84610 1.21508 1.20558 1.67050 1.25404 0.97346 0.85643 1.04512 1.20279 0.78883 0.73712 0.96699 1.93078 1.64450 1.75064 1.84104 1.93143 1.95687 1.44230 1.84367 1.21849 0.93086 0.94818 1.11444 1.16641 0.77307 0.84136 0.82715 1.90873 1.52465 1.68576 1.32498 1.48426 1.66880 1.11102 1.06273 1.22835 1.03474 0.96557 0.79377 1.22427 0.95788 0.91752 1.00303 0.85702 1.21836 0.94305 1.02838 1.01456 1.22369 1.01165 0.95278 0.92315 0.89223 1.20880 0.93129 0.86114 0.96166 1.42641 1.28554 1.02244 1.65645 1.19668 1.05913 0.84346 1.27289 0.90411 1.25549 0.97790 1.02138 1.01450 1.69821 1.16760 1.33036 1.42498 0.85116 0.77628 0.80498 0.76797 1.18774 1.22535 1.22026 1.21827 0.99456 0.80395 0.98029 0.86889 0.90358 0.88164 0.78077 0.88752 0.88352 0.92128 0.89342 0.94285 0.94770 0.95636 0.79600 0.94158 0.93393 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.49 71.24 0.75 -0.44 16 2 C 0.06 1.21 7.59 45.16 0.34 1.55 16 3 N -0.35 -7.12 12.01 -44.78 -0.54 -7.66 16 4 O 0.13 2.43 11.06 77.00 0.85 3.28 16 5 C -0.06 -1.19 7.13 25.48 0.18 -1.01 16 6 C 0.36 5.37 5.81 71.23 0.41 5.79 16 7 F -0.19 -3.13 17.32 44.97 0.78 -2.35 16 8 F -0.19 -4.66 16.11 44.97 0.72 -3.93 16 9 C -0.20 -4.64 5.08 -18.74 -0.10 -4.74 16 10 C 0.61 17.70 6.62 86.65 0.57 18.27 16 11 O -0.57 -22.61 17.43 -4.08 -0.07 -22.68 16 12 N -0.60 -14.96 3.31 -815.27 -2.70 -17.66 16 13 C 0.10 1.49 6.16 86.93 0.54 2.03 16 14 C -0.08 -1.37 3.54 -9.32 -0.03 -1.41 16 15 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 16 C -0.15 -2.39 8.15 71.98 0.59 -1.80 16 17 C -0.09 -2.48 2.88 -9.61 -0.03 -2.51 16 18 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 19 C 0.16 5.83 4.52 86.38 0.39 6.22 16 20 N -0.75 -36.73 5.45 -343.44 -1.87 -38.60 16 21 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -59.76 13.06 21.65 0.28 -59.47 16 25 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 29 C 0.13 4.00 5.83 86.73 0.51 4.51 16 30 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.20 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 0.99 7.60 -2.39 -0.02 0.97 16 36 H 0.06 1.14 6.76 -2.38 -0.02 1.12 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 0.79 7.91 -2.39 -0.02 0.77 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.03 0.94 6.67 -2.39 -0.02 0.92 16 41 H 0.37 19.72 7.52 -92.71 -0.70 19.02 16 42 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.05 1.84 7.76 -2.38 -0.02 1.82 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -77.95 377.70 5.26 -72.69 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.35 Total: 18.04 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.43 Total: 10.16 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -4.82 Total: -123.39 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.78 Total: -19.41 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 1.50 Total: -6.29 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -77.95 5.26 -72.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501123340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.026 kcal (2) G-P(sol) polarization free energy of solvation -77.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds