Wall clock time and date at job start Wed Apr 1 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30021 * 127.33131 * 2 1 4 4 O 1.20654 * 112.29561 * 180.30404 * 3 2 1 5 5 C 1.33489 * 113.16013 * 359.71207 * 4 3 2 6 6 C 1.50701 * 126.82917 * 179.97438 * 5 4 3 7 7 F 1.39908 * 109.46972 * 30.02838 * 6 5 4 8 8 F 1.39903 * 109.47122 * 150.02353 * 6 5 4 9 9 C 1.37354 * 106.34359 * 0.02562 * 5 4 3 10 10 C 1.47401 * 128.56619 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00189 * 89.99796 * 10 9 5 12 12 N 1.34781 * 119.99480 * 269.99532 * 10 9 5 13 13 C 1.47486 * 127.03579 * 0.02562 * 12 10 9 14 14 C 1.54003 * 107.08454 * 154.29172 * 13 12 10 15 15 H 1.09001 * 110.32237 * 242.41833 * 14 13 12 16 16 C 1.52995 * 110.32936 * 120.30075 * 14 13 12 17 17 C 1.54620 * 105.03961 * 1.30302 * 14 13 12 18 18 H 1.09004 * 110.73930 * 263.50537 * 17 14 13 19 19 C 1.53007 * 110.73501 * 140.37131 * 17 14 13 20 20 N 1.46499 * 109.47106 * 174.99432 * 19 17 14 21 21 C 1.36933 * 119.99935 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00290 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00305 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99646 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47396 * 90.00031 * 25 23 21 27 27 H 1.48496 * 109.47208 * 210.00053 * 25 23 21 28 28 H 1.48504 * 109.47097 * 330.00028 * 25 23 21 29 29 C 1.48113 * 127.02791 * 179.70984 * 12 10 9 30 30 H 1.08996 * 109.47311 * 270.14478 * 1 2 3 31 31 H 1.09000 * 109.47261 * 30.14960 * 1 2 3 32 32 H 1.09002 * 109.47117 * 150.14376 * 1 2 3 33 33 H 1.08994 * 109.47613 * 270.02731 * 6 5 4 34 34 H 1.08999 * 109.91088 * 273.65318 * 13 12 10 35 35 H 1.08998 * 109.91112 * 34.92867 * 13 12 10 36 36 H 1.08998 * 109.47270 * 61.45090 * 16 14 13 37 37 H 1.08994 * 109.47285 * 181.45371 * 16 14 13 38 38 H 1.09001 * 109.46934 * 301.45480 * 16 14 13 39 39 H 1.08994 * 109.46861 * 294.99843 * 19 17 14 40 40 H 1.09006 * 109.46771 * 54.99904 * 19 17 14 41 41 H 0.97002 * 119.99709 * 0.02562 * 20 19 17 42 42 H 0.96996 * 119.99900 * 179.97438 * 24 23 21 43 43 H 1.08997 * 110.66402 * 337.99428 * 29 12 10 44 44 H 1.08998 * 110.66769 * 101.11840 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7209 -0.0059 5 6 3.6494 -0.6006 -0.0048 6 6 4.9712 -1.3244 -0.0115 7 9 5.9326 -0.5456 0.6416 8 9 4.8354 -2.5495 0.6505 9 6 2.3992 -1.1695 0.0024 10 6 2.0402 -2.5992 0.0060 11 8 1.8977 -3.1877 1.0606 12 7 1.8698 -3.2540 -1.1597 13 6 2.0033 -2.6975 -2.5190 14 6 2.3629 -3.8675 -3.4536 15 1 3.3428 -3.7058 -3.9027 16 6 1.2995 -4.0243 -4.5423 17 6 2.3895 -5.1159 -2.5417 18 1 3.4072 -5.3378 -2.2207 19 6 1.7737 -6.3211 -3.2553 20 7 1.9204 -7.5129 -2.4161 21 6 1.4403 -8.7195 -2.8504 22 1 0.9539 -8.7927 -3.8119 23 6 1.5790 -9.8487 -2.0549 24 7 2.1713 -9.7594 -0.8830 25 14 0.9246 -11.4949 -2.6478 26 1 1.9849 -12.2044 -3.4078 27 1 0.5193 -12.3164 -1.4791 28 1 -0.2506 -11.2725 -3.5280 29 6 1.5166 -4.6814 -1.3375 30 1 -0.3634 0.0026 1.0276 31 1 -0.3634 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5116 33 1 5.2840 -1.5003 -1.0406 34 1 1.0598 -2.2496 -2.8309 35 1 2.7963 -1.9499 -2.5378 36 1 1.2588 -3.1162 -5.1439 37 1 1.5541 -4.8711 -5.1795 38 1 0.3281 -4.1971 -4.0791 39 1 0.7157 -6.1335 -3.4382 40 1 2.2840 -6.4806 -4.2052 41 1 2.3570 -7.4471 -1.5524 42 1 2.2678 -10.5484 -0.3271 43 1 1.7755 -5.2554 -0.4479 44 1 0.4576 -4.7893 -1.5715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501123341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:58 Heat of formation + Delta-G solvation = -53.333970 kcal Electronic energy + Delta-G solvation = -31014.941591 eV Core-core repulsion = 26414.175503 eV Total energy + Delta-G solvation = -4600.766087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.53871 -47.56038 -45.41456 -40.24136 -38.15416 -35.09968 -34.71859 -33.47655 -32.87552 -31.23959 -29.39458 -29.10890 -27.58880 -26.67335 -25.71877 -24.37771 -23.09896 -21.97971 -21.21703 -19.99473 -19.16018 -18.76428 -18.34737 -17.63388 -17.59913 -17.43473 -16.82170 -16.36442 -15.96029 -15.36741 -14.95720 -14.72122 -14.35415 -14.07539 -13.88349 -13.85682 -13.80616 -13.75547 -13.46535 -13.34884 -13.16213 -12.98142 -12.53954 -12.40870 -12.30532 -12.02030 -11.95328 -11.79680 -11.76832 -11.03856 -10.87101 -10.65486 -10.51227 -10.46727 -10.35974 -10.32518 -10.08006 -10.00446 -9.70464 -8.90792 -8.81884 -6.94559 -5.77122 -3.06878 0.54189 1.39151 1.85622 2.17771 2.72360 3.18640 3.42930 3.47827 3.49367 3.50087 3.57956 3.98201 4.17017 4.19050 4.42043 4.47169 4.57193 4.62905 4.72154 4.79565 5.01998 5.06820 5.15359 5.18622 5.30103 5.35013 5.45264 5.57359 5.57812 5.68623 5.73118 5.85723 5.98284 6.04251 6.07064 6.19572 6.30876 6.39326 6.65267 6.77610 7.32134 7.61018 7.68186 7.88252 8.40866 9.52180 10.08990 10.42853 11.45357 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.002830 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.613262 B = 9892.237210 C =10408.983872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.339 5.339 4 O 0.126 5.874 5 C -0.079 4.079 6 C 0.364 3.636 7 F -0.182 7.182 8 F -0.168 7.168 9 C -0.184 4.184 10 C 0.607 3.393 11 O -0.506 6.506 12 N -0.610 5.610 13 C 0.104 3.896 14 C -0.098 4.098 15 H 0.084 0.916 16 C -0.145 4.145 17 C -0.103 4.103 18 H 0.085 0.915 19 C 0.165 3.835 20 N -0.734 5.734 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.117 3.883 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.093 0.907 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 23.483 -4.083 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 N -0.041 5.041 4 O 0.059 5.941 5 C -0.144 4.144 6 C 0.308 3.692 7 F -0.163 7.163 8 F -0.149 7.149 9 C -0.191 4.191 10 C 0.392 3.608 11 O -0.380 6.380 12 N -0.344 5.344 13 C -0.019 4.019 14 C -0.117 4.117 15 H 0.102 0.898 16 C -0.203 4.203 17 C -0.123 4.123 18 H 0.103 0.897 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.004 4.004 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.358 24.386 -3.465 24.669 hybrid contribution -0.169 -1.619 0.161 1.636 sum 1.189 22.767 -3.304 23.036 Atomic orbital electron populations 1.20291 0.84354 1.04515 1.04481 1.24852 0.98963 0.85723 1.01010 1.73627 0.88944 1.23008 1.18527 1.84604 1.21605 1.20690 1.67212 1.25138 0.97138 0.85795 1.06349 1.19574 0.79634 0.75114 0.94833 1.93088 1.64275 1.74976 1.83972 1.93191 1.95614 1.42588 1.83460 1.22128 0.91891 0.96133 1.08981 1.16313 0.78062 0.83263 0.83175 1.90906 1.49947 1.67125 1.30059 1.48754 1.68090 1.12739 1.04772 1.22282 1.01315 0.96690 0.81624 1.22040 1.00303 0.93889 0.95516 0.89793 1.21901 0.98613 1.01872 0.97879 1.22545 1.00506 0.94744 0.94507 0.89700 1.20702 0.96965 0.85186 0.93386 1.42405 1.71052 1.03733 1.20654 1.19183 1.30847 0.85897 1.01467 0.91192 1.24750 1.01380 0.97998 0.96676 1.69655 1.48207 1.28929 1.11056 0.86210 0.78420 0.84237 0.77414 1.21736 1.21770 1.20771 1.22667 0.99390 0.78463 0.99868 0.89122 0.89463 0.89439 0.83449 0.90978 0.91662 0.92983 0.91158 0.92037 0.95690 0.95784 0.78237 0.93432 0.88874 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.49 36.01 0.38 -0.24 16 2 C 0.06 0.60 7.59 -79.76 -0.61 0.00 16 3 N -0.34 -3.81 12.01 34.78 0.42 -3.39 16 4 O 0.13 1.34 11.06 18.66 0.21 1.55 16 5 C -0.08 -0.83 7.13 -34.63 -0.25 -1.08 16 6 C 0.36 3.25 5.81 36.01 0.21 3.46 16 7 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 8 F -0.17 -2.14 16.11 2.25 0.04 -2.10 16 9 C -0.18 -2.22 5.18 -102.90 -0.53 -2.75 16 10 C 0.61 8.84 6.66 -12.53 -0.08 8.75 16 11 O -0.51 -9.57 17.31 5.27 0.09 -9.48 16 12 N -0.61 -7.86 3.29 -171.04 -0.56 -8.42 16 13 C 0.10 0.98 6.41 -2.98 -0.02 0.96 16 14 C -0.10 -0.99 3.52 -89.25 -0.31 -1.31 16 15 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.15 -1.37 7.79 37.15 0.29 -1.08 16 17 C -0.10 -1.48 3.00 -88.74 -0.27 -1.74 16 18 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.17 2.97 4.45 -4.04 -0.02 2.95 16 20 N -0.73 -17.73 5.52 -59.91 -0.33 -18.06 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.12 1.76 6.46 -2.13 -0.01 1.75 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.15 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 35 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.73 6.76 -51.93 -0.35 0.38 16 38 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 39 H 0.03 0.45 6.82 -51.93 -0.35 0.09 16 40 H 0.02 0.44 7.38 -51.93 -0.38 0.05 16 41 H 0.38 9.93 7.67 -40.82 -0.31 9.62 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 1.69 7.85 -51.93 -0.41 1.28 16 44 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -33.93 377.02 -6.11 -40.04 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.92 Total: 3.57 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.47 Total: 2.49 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.25 Total: -57.12 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.30 Total: -7.93 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.83 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.93 -6.11 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501123341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.293 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds