Wall clock time and date at job start Wed Apr 1 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30021 * 127.33131 * 2 1 4 4 O 1.20654 * 112.29561 * 180.30404 * 3 2 1 5 5 C 1.33489 * 113.16013 * 359.71207 * 4 3 2 6 6 C 1.50701 * 126.82917 * 179.97438 * 5 4 3 7 7 F 1.39908 * 109.46972 * 30.02838 * 6 5 4 8 8 F 1.39903 * 109.47122 * 150.02353 * 6 5 4 9 9 C 1.37354 * 106.34359 * 0.02562 * 5 4 3 10 10 C 1.47401 * 128.56619 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00189 * 89.99796 * 10 9 5 12 12 N 1.34781 * 119.99480 * 269.99532 * 10 9 5 13 13 C 1.47486 * 127.03579 * 0.02562 * 12 10 9 14 14 C 1.54003 * 107.08454 * 154.29172 * 13 12 10 15 15 H 1.09001 * 110.32237 * 242.41833 * 14 13 12 16 16 C 1.52995 * 110.32936 * 120.30075 * 14 13 12 17 17 C 1.54620 * 105.03961 * 1.30302 * 14 13 12 18 18 H 1.09004 * 110.73930 * 263.50537 * 17 14 13 19 19 C 1.53007 * 110.73501 * 140.37131 * 17 14 13 20 20 N 1.46499 * 109.47106 * 174.99432 * 19 17 14 21 21 C 1.36933 * 119.99935 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00290 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00305 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99646 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47396 * 90.00031 * 25 23 21 27 27 H 1.48496 * 109.47208 * 210.00053 * 25 23 21 28 28 H 1.48504 * 109.47097 * 330.00028 * 25 23 21 29 29 C 1.48113 * 127.02791 * 179.70984 * 12 10 9 30 30 H 1.08996 * 109.47311 * 270.14478 * 1 2 3 31 31 H 1.09000 * 109.47261 * 30.14960 * 1 2 3 32 32 H 1.09002 * 109.47117 * 150.14376 * 1 2 3 33 33 H 1.08994 * 109.47613 * 270.02731 * 6 5 4 34 34 H 1.08999 * 109.91088 * 273.65318 * 13 12 10 35 35 H 1.08998 * 109.91112 * 34.92867 * 13 12 10 36 36 H 1.08998 * 109.47270 * 61.45090 * 16 14 13 37 37 H 1.08994 * 109.47285 * 181.45371 * 16 14 13 38 38 H 1.09001 * 109.46934 * 301.45480 * 16 14 13 39 39 H 1.08994 * 109.46861 * 294.99843 * 19 17 14 40 40 H 1.09006 * 109.46771 * 54.99904 * 19 17 14 41 41 H 0.97002 * 119.99709 * 0.02562 * 20 19 17 42 42 H 0.96996 * 119.99900 * 179.97438 * 24 23 21 43 43 H 1.08997 * 110.66402 * 337.99428 * 29 12 10 44 44 H 1.08998 * 110.66769 * 101.11840 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7209 -0.0059 5 6 3.6494 -0.6006 -0.0048 6 6 4.9712 -1.3244 -0.0115 7 9 5.9326 -0.5456 0.6416 8 9 4.8354 -2.5495 0.6505 9 6 2.3992 -1.1695 0.0024 10 6 2.0402 -2.5992 0.0060 11 8 1.8977 -3.1877 1.0606 12 7 1.8698 -3.2540 -1.1597 13 6 2.0033 -2.6975 -2.5190 14 6 2.3629 -3.8675 -3.4536 15 1 3.3428 -3.7058 -3.9027 16 6 1.2995 -4.0243 -4.5423 17 6 2.3895 -5.1159 -2.5417 18 1 3.4072 -5.3378 -2.2207 19 6 1.7737 -6.3211 -3.2553 20 7 1.9204 -7.5129 -2.4161 21 6 1.4403 -8.7195 -2.8504 22 1 0.9539 -8.7927 -3.8119 23 6 1.5790 -9.8487 -2.0549 24 7 2.1713 -9.7594 -0.8830 25 14 0.9246 -11.4949 -2.6478 26 1 1.9849 -12.2044 -3.4078 27 1 0.5193 -12.3164 -1.4791 28 1 -0.2506 -11.2725 -3.5280 29 6 1.5166 -4.6814 -1.3375 30 1 -0.3634 0.0026 1.0276 31 1 -0.3634 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5116 33 1 5.2840 -1.5003 -1.0406 34 1 1.0598 -2.2496 -2.8309 35 1 2.7963 -1.9499 -2.5378 36 1 1.2588 -3.1162 -5.1439 37 1 1.5541 -4.8711 -5.1795 38 1 0.3281 -4.1971 -4.0791 39 1 0.7157 -6.1335 -3.4382 40 1 2.2840 -6.4806 -4.2052 41 1 2.3570 -7.4471 -1.5524 42 1 2.2678 -10.5484 -0.3271 43 1 1.7755 -5.2554 -0.4479 44 1 0.4576 -4.7893 -1.5715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501123341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:57 Heat of formation + Delta-G solvation = -75.658059 kcal Electronic energy + Delta-G solvation = -31015.909636 eV Core-core repulsion = 26414.175503 eV Total energy + Delta-G solvation = -4601.734132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.33432 -48.37185 -46.25252 -41.33971 -39.32315 -36.45517 -35.89640 -34.52541 -34.02403 -32.84322 -30.65418 -29.94394 -28.54646 -27.55695 -26.98860 -25.68289 -24.48943 -23.29563 -22.01530 -20.96412 -20.34623 -19.60574 -19.34655 -18.85938 -18.42634 -18.35178 -18.18470 -17.37584 -17.16953 -16.57431 -16.22205 -16.04628 -15.36183 -15.25768 -15.17039 -14.89715 -14.69768 -14.63212 -14.46943 -14.41388 -14.10922 -13.87117 -13.84326 -13.52524 -13.46775 -13.10383 -12.91908 -12.77837 -12.76390 -12.71641 -12.59668 -12.15179 -11.83345 -11.66487 -11.59334 -11.49288 -11.33309 -11.17804 -11.03365 -10.87616 -9.93179 -8.95912 -7.92076 -5.20860 -0.30898 0.56171 1.00160 1.12533 1.48838 1.50424 1.58784 1.69667 2.43626 2.58065 2.76710 2.84024 3.13686 3.35052 3.40975 3.44781 3.54158 3.63117 3.76214 3.82932 3.88477 4.10526 4.23520 4.26743 4.37194 4.46703 4.48994 4.58533 4.60252 4.65126 4.80542 4.83523 4.87767 4.98118 5.02904 5.10122 5.22725 5.27819 5.41574 5.53769 5.56782 6.27419 6.29768 6.77513 6.78870 7.35879 8.13476 8.33805 9.31540 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.002830 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.613262 B = 9892.237210 C =10408.983872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.062 3.938 3 N -0.349 5.349 4 O 0.127 5.873 5 C -0.064 4.064 6 C 0.358 3.642 7 F -0.186 7.186 8 F -0.193 7.193 9 C -0.206 4.206 10 C 0.610 3.390 11 O -0.563 6.563 12 N -0.603 5.603 13 C 0.102 3.898 14 C -0.085 4.085 15 H 0.108 0.892 16 C -0.145 4.145 17 C -0.096 4.096 18 H 0.071 0.929 19 C 0.166 3.834 20 N -0.750 5.750 21 C -0.240 4.240 22 H 0.080 0.920 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.266 1.266 29 C 0.120 3.880 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.203 0.797 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.050 0.950 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 25.571 -6.821 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 N -0.053 5.053 4 O 0.062 5.938 5 C -0.129 4.129 6 C 0.304 3.696 7 F -0.167 7.167 8 F -0.175 7.175 9 C -0.213 4.213 10 C 0.397 3.603 11 O -0.442 6.442 12 N -0.335 5.335 13 C -0.020 4.020 14 C -0.104 4.104 15 H 0.126 0.874 16 C -0.202 4.202 17 C -0.116 4.116 18 H 0.089 0.911 19 C 0.040 3.960 20 N -0.392 5.392 21 C -0.372 4.372 22 H 0.098 0.902 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.214 1.214 27 H -0.227 1.227 28 H -0.191 1.191 29 C -0.002 4.002 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.219 0.781 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.156 26.531 -6.291 27.291 hybrid contribution -0.114 -2.180 0.971 2.389 sum 1.041 24.351 -5.320 24.947 Atomic orbital electron populations 1.20445 0.82624 1.05736 1.05024 1.25223 1.00005 0.84891 0.99867 1.73633 0.89102 1.23159 1.19406 1.84607 1.21553 1.20546 1.67082 1.25400 0.97358 0.85659 1.04495 1.20286 0.78856 0.73721 0.96772 1.93078 1.64250 1.75022 1.84370 1.93147 1.95712 1.44315 1.84282 1.21875 0.93084 0.94898 1.11446 1.16578 0.77040 0.84068 0.82614 1.90875 1.52592 1.68597 1.32133 1.48745 1.66947 1.11738 1.06051 1.22574 1.03589 0.96809 0.79006 1.22043 1.02122 0.91302 0.94979 0.87356 1.21900 0.97639 1.03032 0.97605 1.22368 0.98919 0.95383 0.94893 0.91082 1.20878 0.97692 0.84393 0.93031 1.42688 1.70687 1.04968 1.20875 1.19646 1.29225 0.86982 1.01363 0.90190 1.25574 1.02734 1.01637 0.97083 1.69830 1.50536 1.29353 1.12537 0.85166 0.78203 0.79902 0.76660 1.21431 1.22708 1.19113 1.22431 0.99538 0.79716 0.98493 0.88886 0.87324 0.89077 0.78112 0.88837 0.88851 0.89954 0.92138 0.92911 0.94900 0.94908 0.79815 0.94206 0.93103 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.49 71.24 0.75 -0.37 16 2 C 0.06 1.21 7.59 45.15 0.34 1.56 16 3 N -0.35 -7.16 12.01 -44.79 -0.54 -7.70 16 4 O 0.13 2.46 11.06 77.03 0.85 3.31 16 5 C -0.06 -1.22 7.13 25.48 0.18 -1.04 16 6 C 0.36 5.70 5.81 71.24 0.41 6.11 16 7 F -0.19 -3.31 17.32 44.97 0.78 -2.53 16 8 F -0.19 -4.90 16.11 44.97 0.72 -4.18 16 9 C -0.21 -4.70 5.18 -18.75 -0.10 -4.79 16 10 C 0.61 17.78 6.66 86.66 0.58 18.36 16 11 O -0.56 -22.38 17.31 -4.05 -0.07 -22.45 16 12 N -0.60 -15.03 3.29 -813.31 -2.68 -17.71 16 13 C 0.10 1.57 6.41 86.53 0.55 2.12 16 14 C -0.09 -1.44 3.52 -9.90 -0.03 -1.48 16 15 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 16 C -0.14 -2.21 7.79 71.98 0.56 -1.65 16 17 C -0.10 -2.67 3.00 -9.58 -0.03 -2.70 16 18 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 19 C 0.17 5.86 4.45 86.38 0.38 6.25 16 20 N -0.75 -36.83 5.52 -343.44 -1.90 -38.73 16 21 C -0.24 -13.10 9.99 84.04 0.84 -12.26 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 24 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 25 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 C 0.12 3.71 6.46 86.73 0.56 4.27 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.20 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.13 7.68 -2.39 -0.02 1.12 16 35 H 0.09 0.99 7.70 -2.39 -0.02 0.98 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.07 6.76 -2.39 -0.02 1.05 16 38 H 0.05 0.91 7.52 -2.39 -0.02 0.89 16 39 H 0.03 1.14 6.82 -2.39 -0.02 1.12 16 40 H 0.03 1.13 7.38 -2.38 -0.02 1.12 16 41 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.05 2.00 7.85 -2.39 -0.02 1.98 16 44 H 0.08 2.42 7.95 -2.39 -0.02 2.41 16 Total: -1.00 -77.29 377.02 5.29 -72.00 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.34 Total: 19.67 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.47 Total: 10.35 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -4.83 Total: -124.14 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.78 Total: -19.14 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.50 Total: -6.70 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -77.29 5.29 -72.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501123341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds